Wall clock time and date at job start Mon Mar 30 2020 06:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86802 * 120.00564 * 2 1 4 4 H 1.48499 * 109.47437 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46711 * 299.99753 * 3 2 1 6 6 H 1.48493 * 109.47186 * 59.99438 * 3 2 1 7 7 C 1.39872 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99980 * 163.05734 * 7 2 1 9 9 C 1.41135 * 119.99817 * 343.04723 * 7 2 1 10 10 C 1.40889 * 120.15700 * 334.54291 * 9 7 2 11 11 C 1.36343 * 119.83518 * 180.27277 * 10 9 7 12 12 C 1.39570 * 120.15913 * 359.49263 * 11 10 9 13 13 N 1.38853 * 119.83989 * 180.25905 * 12 11 10 14 14 C 1.46498 * 120.00232 * 0.24862 * 13 12 11 15 15 H 1.09004 * 109.56895 * 324.99963 * 14 13 12 16 16 C 1.54522 * 109.57293 * 204.75218 * 14 13 12 17 17 C 1.45878 * 111.67213 * 162.95792 * 16 14 13 18 18 C 1.53978 * 112.67114 * 61.49382 * 17 16 14 19 19 N 1.44298 * 108.31144 * 278.59472 * 18 17 16 20 20 C 1.47944 * 113.64204 * 95.39867 * 19 18 17 21 21 C 1.50537 * 109.57351 * 85.24535 * 14 13 12 22 22 C 1.39569 * 120.31288 * 0.50366 * 12 11 10 23 23 C 1.36330 * 120.16428 * 359.75718 * 22 12 11 24 24 H 0.97009 * 119.99636 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.08289 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.91551 * 179.74763 * 11 10 9 27 27 H 0.97001 * 120.00216 * 180.24713 * 13 12 11 28 28 H 1.08995 * 109.04160 * 283.51890 * 16 14 13 29 29 H 1.09001 * 109.03924 * 42.39480 * 16 14 13 30 30 H 1.08999 * 108.84411 * 182.32483 * 17 16 14 31 31 H 1.09008 * 108.84197 * 300.77575 * 17 16 14 32 32 H 1.08997 * 109.69294 * 38.29951 * 18 17 16 33 33 H 1.09000 * 109.69448 * 158.89550 * 18 17 16 34 34 H 1.00903 * 111.00133 * 221.34151 * 19 18 17 35 35 H 1.08997 * 108.71297 * 79.13195 * 20 19 18 36 36 H 1.08997 * 108.71194 * 197.26959 * 20 19 18 37 37 H 1.08992 * 108.79017 * 332.45861 * 21 14 13 38 38 H 1.09005 * 108.78207 * 90.67507 * 21 14 13 39 39 H 1.08010 * 119.91358 * 179.77055 * 22 12 11 40 40 H 1.08001 * 120.08294 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3462 -0.0006 5 1 1.8844 2.3963 -1.2126 6 1 1.8844 2.3964 1.2124 7 6 2.0083 -1.2114 0.0005 8 1 3.0531 -1.2318 -0.2720 9 6 1.3485 -2.4069 0.3575 10 6 0.2181 -2.3678 1.1974 11 6 -0.4109 -3.5272 1.5426 12 6 0.0562 -4.7496 1.0574 13 7 -0.5927 -5.9259 1.4088 14 6 -1.7679 -5.8813 2.2824 15 1 -1.6476 -5.0840 3.0159 16 6 -1.9232 -7.2354 3.0106 17 6 -2.8081 -7.1277 4.1653 18 6 -4.2369 -6.7018 3.7804 19 7 -4.2538 -5.2683 3.6158 20 6 -4.0768 -4.8299 2.2140 21 6 -3.0005 -5.6255 1.4570 22 6 1.1754 -4.7958 0.2248 23 6 1.8174 -3.6450 -0.1243 24 1 -0.4850 0.8402 -0.0004 25 1 -0.1465 -1.4223 1.5708 26 1 -1.2751 -3.4991 2.1896 27 1 -0.2679 -6.7771 1.0759 28 1 -2.3333 -7.9679 2.3155 29 1 -0.9424 -7.5740 3.3446 30 1 -2.8519 -8.0945 4.6667 31 1 -2.3971 -6.3917 4.8564 32 1 -4.5240 -7.1823 2.8452 33 1 -4.9311 -6.9890 4.5701 34 1 -5.0887 -4.8681 4.0171 35 1 -5.0267 -4.9395 1.6907 36 1 -3.7956 -3.7768 2.2097 37 1 -2.7156 -5.0701 0.5635 38 1 -3.4239 -6.5827 1.1526 39 1 1.5336 -5.7457 -0.1439 40 1 2.6836 -3.6823 -0.7682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129041616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:01 Heat of formation + Delta-G solvation = 19.271170 kcal Electronic energy + Delta-G solvation = -19463.335616 eV Core-core repulsion = 16662.953789 eV Total energy + Delta-G solvation = -2800.381827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.18110 -37.49907 -35.01023 -33.32714 -32.59653 -30.82436 -29.37009 -28.21395 -25.49245 -24.92614 -23.53786 -21.42074 -20.32253 -20.08769 -19.26259 -17.14766 -16.75221 -16.01790 -15.53547 -14.92774 -14.77584 -14.29818 -13.84929 -13.62762 -13.18494 -12.75321 -12.65275 -12.46095 -12.33595 -11.91887 -11.67553 -11.37596 -11.11156 -11.04313 -10.95970 -10.74187 -10.60296 -10.49938 -10.34637 -10.20730 -9.61824 -9.20656 -9.18017 -8.51703 -8.26817 -7.42044 -6.57837 -6.30696 -3.97607 2.95362 3.16480 3.19086 3.24350 3.40462 4.10159 4.16832 4.36544 4.82066 4.86720 4.93378 5.05972 5.23932 5.34972 5.54092 5.60892 5.69358 5.80791 5.88973 5.90892 6.06902 6.14982 6.26914 6.33151 6.34758 6.39381 6.52159 6.65449 7.01419 7.04662 7.16170 7.26704 7.41925 7.42141 7.64452 7.76466 7.92319 8.22096 8.37168 8.58181 8.79159 8.88606 9.12328 9.22198 10.43752 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.030193 B = 0.004719 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.130133 B = 5931.461513 C = 6552.408689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.122 4.122 11 C -0.164 4.164 12 C 0.097 3.903 13 N -0.760 5.760 14 C 0.173 3.827 15 H 0.083 0.917 16 C -0.121 4.121 17 C -0.112 4.112 18 C 0.067 3.933 19 N -0.700 5.700 20 C 0.067 3.933 21 C -0.135 4.135 22 C -0.163 4.163 23 C -0.186 4.186 24 H 0.274 0.726 25 H 0.117 0.883 26 H 0.092 0.908 27 H 0.381 0.619 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.061 0.939 34 H 0.342 0.658 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 -10.255 5.950 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.142 4.142 11 C -0.185 4.185 12 C 0.000 4.000 13 N -0.393 5.393 14 C 0.066 3.934 15 H 0.101 0.899 16 C -0.160 4.160 17 C -0.151 4.151 18 C -0.063 4.063 19 N -0.332 5.332 20 C -0.061 4.061 21 C -0.175 4.175 22 C -0.185 4.185 23 C -0.207 4.207 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.110 0.890 27 H 0.213 0.787 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.001 -9.947 6.154 14.171 hybrid contribution -0.487 0.254 -0.656 0.856 sum -8.489 -9.693 5.498 14.008 Atomic orbital electron populations 1.69862 1.07313 1.28351 1.38270 1.25770 0.94646 1.00776 0.92812 0.86385 0.80982 0.81730 0.78264 1.18682 1.20343 1.19999 1.19390 0.97505 0.91280 1.41728 0.91021 1.17497 0.92512 0.91971 0.91055 1.20940 0.98048 0.96397 0.98808 1.20162 1.01909 0.91866 1.04611 1.17362 0.95343 0.85812 1.01522 1.44053 1.32233 1.05814 1.57235 1.20266 0.84709 0.96892 0.91527 0.89936 1.20798 0.99957 0.97432 0.97769 1.20451 0.95362 1.00904 0.98392 1.21596 0.96838 0.88298 0.99616 1.59024 1.44812 1.10180 1.19151 1.22170 0.96892 1.00295 0.86785 1.21975 0.95860 0.99708 0.99950 1.19809 0.98061 0.96995 1.03621 1.20538 1.02595 0.92732 1.04799 0.91491 0.86477 0.89037 0.78732 0.92857 0.91812 0.92511 0.90951 0.94270 0.92085 0.84005 0.95660 0.90642 0.90283 0.93288 0.89750 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.84 10.96 55.54 0.61 -21.23 16 2 C 0.07 1.96 5.15 -17.34 -0.09 1.87 16 3 Si 0.90 19.56 29.59 -169.99 -5.03 14.53 16 4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.47 -12.94 9.03 -37.87 -0.34 -13.28 16 8 H 0.07 1.92 7.90 -52.49 -0.41 1.51 16 9 C 0.07 2.00 5.57 -106.79 -0.59 1.40 16 10 C -0.12 -3.25 8.63 -39.26 -0.34 -3.59 16 11 C -0.16 -3.89 9.08 -39.77 -0.36 -4.25 16 12 C 0.10 2.13 6.52 -83.69 -0.55 1.59 16 13 N -0.76 -13.46 5.13 -52.45 -0.27 -13.72 16 14 C 0.17 2.66 1.84 -68.36 -0.13 2.54 16 15 H 0.08 1.47 6.10 -51.93 -0.32 1.15 16 16 C -0.12 -1.50 4.84 -29.30 -0.14 -1.64 16 17 C -0.11 -1.23 5.38 -29.59 -0.16 -1.39 16 18 C 0.07 0.68 6.15 -4.70 -0.03 0.65 16 19 N -0.70 -8.03 6.18 -113.88 -0.70 -8.73 16 20 C 0.07 0.88 6.43 -2.85 -0.02 0.86 16 21 C -0.14 -1.97 4.85 -27.56 -0.13 -2.11 16 22 C -0.16 -3.73 9.82 -39.77 -0.39 -4.12 16 23 C -0.19 -4.71 9.74 -39.27 -0.38 -5.10 16 24 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 25 H 0.12 3.24 6.19 -52.49 -0.32 2.92 16 26 H 0.09 2.03 6.15 -52.49 -0.32 1.70 16 27 H 0.38 6.08 8.61 -40.82 -0.35 5.73 16 28 H 0.05 0.61 7.60 -51.93 -0.39 0.22 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.89 8.08 -51.92 -0.42 0.47 16 32 H 0.04 0.41 6.79 -51.93 -0.35 0.06 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.34 3.24 8.89 -39.29 -0.35 2.89 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.37 7.83 -51.93 -0.41 0.96 16 38 H 0.05 0.65 6.67 -51.93 -0.35 0.31 16 39 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 312.13 15.07 4.70 4.70 Total: -1.00 -28.35 312.13 -10.44 -38.79 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.09 Total: 12.24 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -3.65 Total: -26.57 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.36 Total: -43.68 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.35 -10.44 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129041616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.056 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds