Wall clock time and date at job start Mon Mar 30 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86802 * 120.00564 * 2 1 4 4 H 1.48499 * 109.47437 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46711 * 299.99753 * 3 2 1 6 6 H 1.48493 * 109.47186 * 59.99438 * 3 2 1 7 7 C 1.39872 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99980 * 163.05734 * 7 2 1 9 9 C 1.41135 * 119.99817 * 343.04723 * 7 2 1 10 10 C 1.40889 * 120.15700 * 334.54291 * 9 7 2 11 11 C 1.36343 * 119.83518 * 180.27277 * 10 9 7 12 12 C 1.39570 * 120.15913 * 359.49263 * 11 10 9 13 13 N 1.38853 * 119.83989 * 180.25905 * 12 11 10 14 14 C 1.46498 * 120.00232 * 0.24862 * 13 12 11 15 15 H 1.09004 * 109.56895 * 324.99963 * 14 13 12 16 16 C 1.54522 * 109.57293 * 204.75218 * 14 13 12 17 17 C 1.45878 * 111.67213 * 162.95792 * 16 14 13 18 18 C 1.53978 * 112.67114 * 61.49382 * 17 16 14 19 19 N 1.44298 * 108.31144 * 278.59472 * 18 17 16 20 20 C 1.47944 * 113.64204 * 95.39867 * 19 18 17 21 21 C 1.50537 * 109.57351 * 85.24535 * 14 13 12 22 22 C 1.39569 * 120.31288 * 0.50366 * 12 11 10 23 23 C 1.36330 * 120.16428 * 359.75718 * 22 12 11 24 24 H 0.97009 * 119.99636 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.08289 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.91551 * 179.74763 * 11 10 9 27 27 H 0.97001 * 120.00216 * 180.24713 * 13 12 11 28 28 H 1.08995 * 109.04160 * 283.51890 * 16 14 13 29 29 H 1.09001 * 109.03924 * 42.39480 * 16 14 13 30 30 H 1.08999 * 108.84411 * 182.32483 * 17 16 14 31 31 H 1.09008 * 108.84197 * 300.77575 * 17 16 14 32 32 H 1.08997 * 109.69294 * 38.29951 * 18 17 16 33 33 H 1.09000 * 109.69448 * 158.89550 * 18 17 16 34 34 H 1.00903 * 111.00133 * 221.34151 * 19 18 17 35 35 H 1.08997 * 108.71297 * 79.13195 * 20 19 18 36 36 H 1.08997 * 108.71194 * 197.26959 * 20 19 18 37 37 H 1.08992 * 108.79017 * 332.45861 * 21 14 13 38 38 H 1.09005 * 108.78207 * 90.67507 * 21 14 13 39 39 H 1.08010 * 119.91358 * 179.77055 * 22 12 11 40 40 H 1.08001 * 120.08294 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3462 -0.0006 5 1 1.8844 2.3963 -1.2126 6 1 1.8844 2.3964 1.2124 7 6 2.0083 -1.2114 0.0005 8 1 3.0531 -1.2318 -0.2720 9 6 1.3485 -2.4069 0.3575 10 6 0.2181 -2.3678 1.1974 11 6 -0.4109 -3.5272 1.5426 12 6 0.0562 -4.7496 1.0574 13 7 -0.5927 -5.9259 1.4088 14 6 -1.7679 -5.8813 2.2824 15 1 -1.6476 -5.0840 3.0159 16 6 -1.9232 -7.2354 3.0106 17 6 -2.8081 -7.1277 4.1653 18 6 -4.2369 -6.7018 3.7804 19 7 -4.2538 -5.2683 3.6158 20 6 -4.0768 -4.8299 2.2140 21 6 -3.0005 -5.6255 1.4570 22 6 1.1754 -4.7958 0.2248 23 6 1.8174 -3.6450 -0.1243 24 1 -0.4850 0.8402 -0.0004 25 1 -0.1465 -1.4223 1.5708 26 1 -1.2751 -3.4991 2.1896 27 1 -0.2679 -6.7771 1.0759 28 1 -2.3333 -7.9679 2.3155 29 1 -0.9424 -7.5740 3.3446 30 1 -2.8519 -8.0945 4.6667 31 1 -2.3971 -6.3917 4.8564 32 1 -4.5240 -7.1823 2.8452 33 1 -4.9311 -6.9890 4.5701 34 1 -5.0887 -4.8681 4.0171 35 1 -5.0267 -4.9395 1.6907 36 1 -3.7956 -3.7768 2.2097 37 1 -2.7156 -5.0701 0.5635 38 1 -3.4239 -6.5827 1.1526 39 1 1.5336 -5.7457 -0.1439 40 1 2.6836 -3.6823 -0.7682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129041616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:00 Heat of formation + Delta-G solvation = 1.905649 kcal Electronic energy + Delta-G solvation = -19464.088641 eV Core-core repulsion = 16662.953789 eV Total energy + Delta-G solvation = -2801.134852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46674 -39.13837 -36.53331 -34.97326 -33.75418 -32.26716 -31.30377 -29.97703 -26.81902 -26.16239 -25.07352 -23.15730 -22.06885 -21.14857 -20.60892 -19.13589 -17.80285 -17.72709 -16.75946 -16.55917 -16.15390 -15.60204 -15.39216 -14.82803 -14.55620 -14.39882 -14.10415 -13.89629 -13.71942 -13.52921 -13.42184 -12.95096 -12.73853 -12.64770 -12.32309 -12.25321 -11.85383 -11.66392 -11.54815 -11.47288 -11.36644 -11.10014 -11.04771 -10.27921 -9.37988 -9.20881 -8.52747 -8.12587 -5.99284 1.12166 1.20433 1.40366 1.54914 1.58958 2.28533 2.85717 2.90715 3.30534 3.74960 3.86427 4.02153 4.18202 4.21317 4.30601 4.45421 4.48518 4.54099 4.65544 4.73303 4.76752 4.86704 5.03474 5.11235 5.18193 5.20456 5.22406 5.28396 5.32917 5.38699 5.48114 5.53453 5.73325 5.84834 5.99888 6.21224 6.24872 6.41833 6.62962 6.70895 6.91372 7.10389 7.18864 7.37415 8.50816 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.030193 B = 0.004719 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.130133 B = 5931.461513 C = 6552.408689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.031 3.969 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.141 4.141 11 C -0.171 4.171 12 C 0.117 3.883 13 N -0.749 5.749 14 C 0.170 3.830 15 H 0.057 0.943 16 C -0.112 4.112 17 C -0.113 4.113 18 C 0.066 3.934 19 N -0.709 5.709 20 C 0.072 3.928 21 C -0.129 4.129 22 C -0.169 4.169 23 C -0.195 4.195 24 H 0.281 0.719 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.394 0.606 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.354 0.646 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 -12.111 6.584 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.031 3.969 10 C -0.161 4.161 11 C -0.193 4.193 12 C 0.017 3.983 13 N -0.382 5.382 14 C 0.064 3.936 15 H 0.075 0.925 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.063 4.063 19 N -0.342 5.342 20 C -0.057 4.057 21 C -0.168 4.168 22 C -0.191 4.191 23 C -0.215 4.215 24 H 0.091 0.909 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.229 0.771 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.174 0.826 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.865 -11.854 6.803 16.290 hybrid contribution -0.310 0.641 -0.808 1.077 sum -9.175 -11.213 5.994 15.680 Atomic orbital electron populations 1.69929 1.08755 1.29603 1.38992 1.26600 0.95453 1.04052 0.91891 0.85257 0.79387 0.76908 0.78676 1.18427 1.19324 1.19160 1.19613 0.97574 0.92682 1.43939 0.91500 1.17814 0.93605 0.93082 0.92421 1.20849 0.98848 0.96574 0.99849 1.20238 1.02161 0.91912 1.05002 1.17450 0.94556 0.86734 0.99513 1.44106 1.32381 1.04906 1.56835 1.20413 0.83990 0.98340 0.90869 0.92534 1.20737 1.00621 0.95341 0.98281 1.20468 0.95406 1.01808 0.97464 1.21671 0.96865 0.87169 1.00631 1.58952 1.45862 1.11459 1.17924 1.22010 0.96971 0.98687 0.88032 1.21851 0.95960 1.00336 0.98672 1.20108 0.97950 0.97626 1.03419 1.20753 1.02988 0.92968 1.04819 0.90865 0.88557 0.88089 0.77145 0.91169 0.91796 0.89988 0.92637 0.93949 0.89663 0.82636 0.94118 0.93061 0.93431 0.91337 0.86473 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.23 10.96 21.82 0.24 -46.99 16 2 C 0.03 1.70 5.15 85.23 0.44 2.14 16 3 Si 0.98 41.06 29.59 68.60 2.03 43.09 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.51 -29.21 9.03 23.38 0.21 -29.00 16 8 H 0.07 3.75 7.90 -2.91 -0.02 3.72 16 9 C 0.03 1.92 5.57 -21.27 -0.12 1.81 16 10 C -0.14 -7.87 8.63 22.48 0.19 -7.67 16 11 C -0.17 -8.33 9.08 22.15 0.20 -8.12 16 12 C 0.12 5.11 6.52 38.67 0.25 5.36 16 13 N -0.75 -25.23 5.13 -319.86 -1.64 -26.87 16 14 C 0.17 4.98 1.84 44.71 0.08 5.06 16 15 H 0.06 1.99 6.10 -2.39 -0.01 1.98 16 16 C -0.11 -2.43 4.84 28.93 0.14 -2.29 16 17 C -0.11 -2.12 5.38 28.74 0.15 -1.96 16 18 C 0.07 1.13 6.15 87.12 0.54 1.67 16 19 N -0.71 -14.90 6.18 -514.21 -3.18 -18.08 16 20 C 0.07 1.81 6.43 86.36 0.56 2.37 16 21 C -0.13 -3.58 4.85 30.06 0.15 -3.44 16 22 C -0.17 -7.59 9.82 22.15 0.22 -7.37 16 23 C -0.20 -10.03 9.74 22.47 0.22 -9.81 16 24 H 0.28 14.28 8.30 -92.70 -0.77 13.51 16 25 H 0.10 5.67 6.19 -2.91 -0.02 5.65 16 26 H 0.10 4.63 6.15 -2.91 -0.02 4.61 16 27 H 0.39 11.44 8.61 -92.71 -0.80 10.65 16 28 H 0.07 1.32 7.60 -2.39 -0.02 1.31 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.25 8.08 -2.38 -0.02 1.23 16 32 H 0.04 0.72 6.79 -2.39 -0.02 0.70 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.35 5.99 8.89 -89.69 -0.80 5.19 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.63 7.83 -2.39 -0.02 1.61 16 38 H 0.07 1.64 6.67 -2.38 -0.02 1.62 16 39 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -63.59 312.13 0.13 -63.45 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.55 Total: 36.68 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 3.23 Total: -51.27 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -4.58 Total: -91.95 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -63.59 0.13 -63.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129041616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.360 kcal (2) G-P(sol) polarization free energy of solvation -63.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds