Wall clock time and date at job start Mon Mar 30 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86799 * 119.99568 * 2 1 4 4 H 1.48498 * 109.47282 * 269.72415 * 3 2 1 5 5 H 1.48501 * 109.47266 * 29.72652 * 3 2 1 6 6 H 1.48507 * 109.47059 * 149.72613 * 3 2 1 7 7 C 1.39868 * 120.00243 * 179.73094 * 2 1 3 8 8 H 1.08005 * 119.99902 * 196.95088 * 7 2 1 9 9 C 1.41133 * 120.00207 * 16.94039 * 7 2 1 10 10 C 1.40890 * 120.15596 * 205.19447 * 9 7 2 11 11 C 1.36344 * 119.83281 * 179.71541 * 10 9 7 12 12 C 1.39563 * 120.16085 * 0.56104 * 11 10 9 13 13 N 1.38864 * 119.84329 * 179.68983 * 12 11 10 14 14 C 1.46502 * 119.99455 * 0.02562 * 13 12 11 15 15 H 1.09002 * 109.57365 * 35.25314 * 14 13 12 16 16 C 1.50463 * 109.56852 * 155.62419 * 14 13 12 17 17 C 1.54297 * 113.03799 * 211.96322 * 16 14 13 18 18 C 1.54064 * 112.28496 * 318.30099 * 17 16 14 19 19 N 1.44271 * 111.97584 * 318.91536 * 18 17 16 20 20 C 1.47797 * 109.45762 * 96.44896 * 19 18 17 21 21 C 1.45868 * 112.91914 * 276.72475 * 20 19 18 22 22 C 1.39573 * 120.31943 * 359.71260 * 12 11 10 23 23 C 1.36339 * 120.15604 * 0.02562 * 22 12 11 24 24 H 0.97001 * 120.00574 * 0.27642 * 1 2 3 25 25 H 1.07997 * 120.08112 * 359.97438 * 10 9 7 26 26 H 1.07995 * 119.91734 * 180.27044 * 11 10 9 27 27 H 0.96998 * 119.99794 * 180.02562 * 13 12 11 28 28 H 1.09001 * 108.77343 * 332.88037 * 16 14 13 29 29 H 1.08995 * 108.77198 * 91.04319 * 16 14 13 30 30 H 1.08992 * 108.91824 * 197.57519 * 17 16 14 31 31 H 1.08997 * 108.91342 * 79.02252 * 17 16 14 32 32 H 1.09001 * 108.98083 * 198.27169 * 18 17 16 33 33 H 1.08997 * 108.91430 * 79.51332 * 18 17 16 34 34 H 1.00899 * 111.00235 * 333.57089 * 19 18 17 35 35 H 1.08997 * 108.79330 * 155.83629 * 20 19 18 36 36 H 1.09001 * 108.79523 * 37.61074 * 20 19 18 37 37 H 1.09000 * 109.05586 * 300.77487 * 21 20 19 38 38 H 1.09007 * 108.99633 * 181.83079 * 21 20 19 39 39 H 1.07990 * 119.92322 * 179.97438 * 22 12 11 40 40 H 1.08005 * 120.08233 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4962 2.0432 -1.4000 5 1 1.4374 2.6544 0.6942 6 1 3.5376 1.4420 0.7059 7 6 2.0084 -1.2113 0.0057 8 1 3.0532 -1.2302 0.2785 9 6 1.3487 -2.4087 -0.3448 10 6 1.8211 -3.6447 0.1391 11 6 1.1753 -4.7970 -0.1990 12 6 0.0561 -4.7551 -1.0316 13 7 -0.5927 -5.9333 -1.3769 14 6 -0.1023 -7.2161 -0.8669 15 1 0.2833 -7.0838 0.1441 16 6 -1.2265 -8.2161 -0.8534 17 6 -1.1080 -9.2424 0.2927 18 6 0.3383 -9.7359 0.4878 19 7 1.0035 -9.9697 -0.7709 20 6 1.8078 -8.7831 -1.1306 21 6 1.0231 -7.7422 -1.7854 22 6 -0.4140 -3.5348 -1.5194 23 6 0.2186 -2.3742 -1.1853 24 1 -0.4851 0.8400 -0.0041 25 1 2.6899 -3.6790 0.7796 26 1 1.5336 -5.7447 0.1748 27 1 -1.3706 -5.9069 -1.9558 28 1 -2.1705 -7.6813 -0.7490 29 1 -1.2320 -8.7504 -1.8034 30 1 -1.7460 -10.0973 0.0689 31 1 -1.4515 -8.7799 1.2180 32 1 0.3221 -10.6647 1.0581 33 1 0.8951 -8.9854 1.0489 34 1 0.3375 -10.1888 -1.4966 35 1 2.6096 -9.0924 -1.8009 36 1 2.2505 -8.3709 -0.2239 37 1 0.5798 -8.1494 -2.6942 38 1 1.6819 -6.9153 -2.0507 39 1 -1.2804 -3.5099 -2.1636 40 1 -0.1460 -1.4306 -1.5638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129041831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:03 Heat of formation + Delta-G solvation = 17.301554 kcal Electronic energy + Delta-G solvation = -19377.987568 eV Core-core repulsion = 16577.520332 eV Total energy + Delta-G solvation = -2800.467236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.58965 -37.65015 -35.09133 -33.20997 -32.57334 -31.02815 -29.40017 -28.27384 -25.76692 -24.71659 -23.67467 -21.51435 -21.10340 -20.23185 -19.40678 -17.18203 -16.25671 -15.87411 -15.44002 -15.06870 -15.00068 -14.72988 -13.96009 -13.63357 -13.17817 -13.09305 -12.78302 -12.55627 -12.20641 -11.98872 -11.77053 -11.62610 -11.37842 -11.05362 -11.03360 -10.87792 -10.83240 -10.61589 -10.44481 -10.32692 -9.65689 -9.31756 -9.22467 -8.60399 -8.46661 -7.49938 -6.63860 -6.39697 -4.04392 2.90933 3.09218 3.15125 3.18528 3.34795 4.05415 4.18864 4.31137 4.65067 4.71238 4.80395 4.98072 5.12464 5.20347 5.28664 5.54393 5.64845 5.73444 5.80693 5.82524 5.91197 5.95540 6.04643 6.13753 6.18959 6.26438 6.31250 6.44696 6.86243 6.98426 7.05745 7.19467 7.31172 7.33215 7.59243 7.66006 7.79433 8.14625 8.33373 8.48695 8.67187 8.79646 9.05811 9.14584 10.37881 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.043777 B = 0.004107 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.445443 B = 6815.725577 C = 7063.861646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.075 3.925 10 C -0.188 4.188 11 C -0.159 4.159 12 C 0.093 3.907 13 N -0.756 5.756 14 C 0.166 3.834 15 H 0.073 0.927 16 C -0.130 4.130 17 C -0.147 4.147 18 C 0.050 3.950 19 N -0.674 5.674 20 C 0.052 3.948 21 C -0.169 4.169 22 C -0.164 4.164 23 C -0.122 4.122 24 H 0.276 0.724 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.383 0.617 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.339 0.661 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 -13.808 -1.914 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.499 4.499 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.209 4.209 11 C -0.181 4.181 12 C -0.004 4.004 13 N -0.390 5.390 14 C 0.059 3.941 15 H 0.091 0.909 16 C -0.169 4.169 17 C -0.186 4.186 18 C -0.080 4.080 19 N -0.303 5.303 20 C -0.077 4.077 21 C -0.210 4.210 22 C -0.186 4.186 23 C -0.142 4.142 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.215 0.785 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.428 -14.090 -1.496 14.241 hybrid contribution -0.766 1.535 -0.464 1.777 sum -2.194 -12.555 -1.959 12.895 Atomic orbital electron populations 1.69847 1.07342 1.28594 1.37914 1.25789 0.94665 1.00866 0.92722 0.86399 0.80454 0.81201 0.79077 1.19557 1.20578 1.18858 1.19382 0.97563 0.91183 1.41747 0.90947 1.17496 0.92425 0.92026 0.90843 1.20569 1.02542 0.92795 1.04958 1.19865 0.97922 0.97015 1.03293 1.17344 0.95980 0.85131 1.01964 1.44010 1.34489 1.02476 1.57996 1.20318 0.92651 0.83881 0.97232 0.90941 1.21696 0.99672 0.96855 0.98650 1.22552 0.98482 0.98459 0.99151 1.21923 0.92665 1.00552 0.92874 1.61103 1.27982 1.35892 1.05277 1.20945 0.96383 0.89390 1.00977 1.21795 0.99737 0.99865 0.99621 1.20044 1.01527 0.92029 1.04979 1.20919 0.98077 0.96264 0.98901 0.91341 0.89158 0.89522 0.78460 0.91266 0.92350 0.91860 0.91491 0.91248 0.91563 0.84351 0.91169 0.91308 0.92468 0.90361 0.89619 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.60 10.96 55.54 0.61 -20.99 16 2 C 0.07 1.93 5.15 -17.34 -0.09 1.84 16 3 Si 0.90 19.33 29.59 -169.99 -5.03 14.30 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.47 -12.76 9.03 -37.87 -0.34 -13.11 16 8 H 0.07 1.91 7.90 -52.48 -0.41 1.50 16 9 C 0.08 2.03 5.57 -106.79 -0.59 1.44 16 10 C -0.19 -4.68 9.74 -39.26 -0.38 -5.06 16 11 C -0.16 -3.55 8.91 -39.77 -0.35 -3.90 16 12 C 0.09 1.99 6.62 -83.68 -0.55 1.44 16 13 N -0.76 -12.86 5.13 -52.49 -0.27 -13.13 16 14 C 0.17 2.34 1.78 -68.41 -0.12 2.21 16 15 H 0.07 1.15 5.49 -51.93 -0.29 0.86 16 16 C -0.13 -1.47 4.88 -27.32 -0.13 -1.60 16 17 C -0.15 -1.44 5.92 -25.50 -0.15 -1.59 16 18 C 0.05 0.51 6.01 -4.67 -0.03 0.48 16 19 N -0.67 -7.12 6.91 -118.15 -0.82 -7.94 16 20 C 0.05 0.61 5.87 -6.71 -0.04 0.57 16 21 C -0.17 -2.20 4.88 -29.32 -0.14 -2.34 16 22 C -0.16 -3.83 9.82 -39.77 -0.39 -4.22 16 23 C -0.12 -3.20 8.63 -39.26 -0.34 -3.53 16 24 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 25 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.09 1.73 6.17 -52.49 -0.32 1.41 16 27 H 0.38 5.96 8.52 -40.82 -0.35 5.62 16 28 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 29 H 0.06 0.60 6.79 -51.93 -0.35 0.24 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.74 6.51 -51.93 -0.34 0.40 16 34 H 0.34 3.28 7.35 -39.29 -0.29 2.99 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.85 7.24 -51.93 -0.38 0.47 16 37 H 0.06 0.70 7.59 -51.93 -0.39 0.30 16 38 H 0.08 1.22 7.92 -51.93 -0.41 0.80 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.12 3.22 6.19 -52.48 -0.32 2.89 16 LS Contribution 309.25 15.07 4.66 4.66 Total: -1.00 -27.62 309.25 -10.45 -38.07 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.94 Total: 12.40 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -3.66 Total: -27.37 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.48 Total: -42.06 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.62 -10.45 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129041831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.372 kcal (2) G-P(sol) polarization free energy of solvation -27.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds