Wall clock time and date at job start Mon Mar 30 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86799 * 119.99568 * 2 1 4 4 H 1.48498 * 109.47282 * 269.72415 * 3 2 1 5 5 H 1.48501 * 109.47266 * 29.72652 * 3 2 1 6 6 H 1.48507 * 109.47059 * 149.72613 * 3 2 1 7 7 C 1.39868 * 120.00243 * 179.73094 * 2 1 3 8 8 H 1.08005 * 119.99902 * 196.95088 * 7 2 1 9 9 C 1.41133 * 120.00207 * 16.94039 * 7 2 1 10 10 C 1.40890 * 120.15596 * 205.19447 * 9 7 2 11 11 C 1.36344 * 119.83281 * 179.71541 * 10 9 7 12 12 C 1.39563 * 120.16085 * 0.56104 * 11 10 9 13 13 N 1.38864 * 119.84329 * 179.68983 * 12 11 10 14 14 C 1.46502 * 119.99455 * 0.02562 * 13 12 11 15 15 H 1.09002 * 109.57365 * 35.25314 * 14 13 12 16 16 C 1.50463 * 109.56852 * 155.62419 * 14 13 12 17 17 C 1.54297 * 113.03799 * 211.96322 * 16 14 13 18 18 C 1.54064 * 112.28496 * 318.30099 * 17 16 14 19 19 N 1.44271 * 111.97584 * 318.91536 * 18 17 16 20 20 C 1.47797 * 109.45762 * 96.44896 * 19 18 17 21 21 C 1.45868 * 112.91914 * 276.72475 * 20 19 18 22 22 C 1.39573 * 120.31943 * 359.71260 * 12 11 10 23 23 C 1.36339 * 120.15604 * 0.02562 * 22 12 11 24 24 H 0.97001 * 120.00574 * 0.27642 * 1 2 3 25 25 H 1.07997 * 120.08112 * 359.97438 * 10 9 7 26 26 H 1.07995 * 119.91734 * 180.27044 * 11 10 9 27 27 H 0.96998 * 119.99794 * 180.02562 * 13 12 11 28 28 H 1.09001 * 108.77343 * 332.88037 * 16 14 13 29 29 H 1.08995 * 108.77198 * 91.04319 * 16 14 13 30 30 H 1.08992 * 108.91824 * 197.57519 * 17 16 14 31 31 H 1.08997 * 108.91342 * 79.02252 * 17 16 14 32 32 H 1.09001 * 108.98083 * 198.27169 * 18 17 16 33 33 H 1.08997 * 108.91430 * 79.51332 * 18 17 16 34 34 H 1.00899 * 111.00235 * 333.57089 * 19 18 17 35 35 H 1.08997 * 108.79330 * 155.83629 * 20 19 18 36 36 H 1.09001 * 108.79523 * 37.61074 * 20 19 18 37 37 H 1.09000 * 109.05586 * 300.77487 * 21 20 19 38 38 H 1.09007 * 108.99633 * 181.83079 * 21 20 19 39 39 H 1.07990 * 119.92322 * 179.97438 * 22 12 11 40 40 H 1.08005 * 120.08233 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4962 2.0432 -1.4000 5 1 1.4374 2.6544 0.6942 6 1 3.5376 1.4420 0.7059 7 6 2.0084 -1.2113 0.0057 8 1 3.0532 -1.2302 0.2785 9 6 1.3487 -2.4087 -0.3448 10 6 1.8211 -3.6447 0.1391 11 6 1.1753 -4.7970 -0.1990 12 6 0.0561 -4.7551 -1.0316 13 7 -0.5927 -5.9333 -1.3769 14 6 -0.1023 -7.2161 -0.8669 15 1 0.2833 -7.0838 0.1441 16 6 -1.2265 -8.2161 -0.8534 17 6 -1.1080 -9.2424 0.2927 18 6 0.3383 -9.7359 0.4878 19 7 1.0035 -9.9697 -0.7709 20 6 1.8078 -8.7831 -1.1306 21 6 1.0231 -7.7422 -1.7854 22 6 -0.4140 -3.5348 -1.5194 23 6 0.2186 -2.3742 -1.1853 24 1 -0.4851 0.8400 -0.0041 25 1 2.6899 -3.6790 0.7796 26 1 1.5336 -5.7447 0.1748 27 1 -1.3706 -5.9069 -1.9558 28 1 -2.1705 -7.6813 -0.7490 29 1 -1.2320 -8.7504 -1.8034 30 1 -1.7460 -10.0973 0.0689 31 1 -1.4515 -8.7799 1.2180 32 1 0.3221 -10.6647 1.0581 33 1 0.8951 -8.9854 1.0489 34 1 0.3375 -10.1888 -1.4966 35 1 2.6096 -9.0924 -1.8009 36 1 2.2505 -8.3709 -0.2239 37 1 0.5798 -8.1494 -2.6942 38 1 1.6819 -6.9153 -2.0507 39 1 -1.2804 -3.5099 -2.1636 40 1 -0.1460 -1.4306 -1.5638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129041831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:03 Heat of formation + Delta-G solvation = 0.427013 kcal Electronic energy + Delta-G solvation = -19378.719303 eV Core-core repulsion = 16577.520332 eV Total energy + Delta-G solvation = -2801.198971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73337 -39.31297 -36.60009 -34.91422 -33.49742 -32.48950 -31.24477 -29.98999 -26.95357 -26.02509 -25.09710 -22.99591 -22.41577 -21.90780 -20.57685 -19.10941 -17.78388 -17.22015 -16.80515 -16.38440 -16.07974 -15.77026 -15.56430 -15.07732 -14.54254 -14.27678 -14.17863 -13.94257 -13.88319 -13.61411 -13.27363 -13.07934 -12.75285 -12.69268 -12.49616 -12.24942 -12.01236 -11.76131 -11.72208 -11.49651 -11.34569 -11.18713 -11.02555 -10.29656 -9.42721 -9.36383 -8.55303 -8.17355 -6.02527 1.08682 1.17558 1.39562 1.52067 1.58009 2.26893 2.82498 2.84211 3.44534 3.68075 3.79589 3.87473 4.09134 4.17969 4.23605 4.34324 4.43202 4.46700 4.61661 4.71040 4.79053 4.79553 4.98696 5.07143 5.09898 5.15199 5.19164 5.20878 5.22887 5.30239 5.37222 5.42302 5.72974 5.77193 5.91714 6.10841 6.17293 6.39790 6.55019 6.67001 6.87305 7.07538 7.12657 7.29399 8.48005 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.043777 B = 0.004107 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.445443 B = 6815.725577 C = 7063.861646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.036 3.964 10 C -0.198 4.198 11 C -0.164 4.164 12 C 0.116 3.884 13 N -0.747 5.747 14 C 0.163 3.837 15 H 0.056 0.944 16 C -0.125 4.125 17 C -0.140 4.140 18 C 0.050 3.950 19 N -0.671 5.671 20 C 0.057 3.943 21 C -0.158 4.158 22 C -0.176 4.176 23 C -0.140 4.140 24 H 0.282 0.718 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.394 0.606 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.347 0.653 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 -15.688 -2.324 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.033 3.967 10 C -0.218 4.218 11 C -0.186 4.186 12 C 0.016 3.984 13 N -0.380 5.380 14 C 0.057 3.943 15 H 0.074 0.926 16 C -0.164 4.164 17 C -0.180 4.180 18 C -0.080 4.080 19 N -0.300 5.300 20 C -0.072 4.072 21 C -0.199 4.199 22 C -0.198 4.198 23 C -0.160 4.160 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.228 0.772 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.166 0.834 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.125 0.875 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.974 -16.029 -1.917 16.263 hybrid contribution -0.667 1.892 -0.355 2.037 sum -2.641 -14.137 -2.272 14.560 Atomic orbital electron populations 1.69909 1.08723 1.29774 1.38759 1.26597 0.95466 1.04051 0.91820 0.85288 0.79008 0.76560 0.79285 1.18910 1.19510 1.18519 1.19601 0.97618 0.92599 1.44004 0.91512 1.17808 0.93622 0.92991 0.92278 1.20760 1.02895 0.93105 1.05014 1.20072 0.97994 0.97208 1.03311 1.17421 0.94992 0.86229 0.99722 1.44106 1.34228 1.02183 1.57512 1.20511 0.94220 0.83157 0.96398 0.92559 1.21631 0.98016 0.96446 1.00270 1.22506 0.98534 0.98632 0.98333 1.21940 0.92639 1.00785 0.92652 1.61113 1.28346 1.34928 1.05659 1.20857 0.96506 0.89367 1.00506 1.21685 0.98890 0.99323 0.99987 1.20243 1.02151 0.91896 1.05506 1.20855 0.98752 0.96627 0.99792 0.90768 0.88832 0.87165 0.77222 0.91467 0.90610 0.89792 0.91909 0.90047 0.92915 0.83424 0.90444 0.92336 0.91046 0.93044 0.87523 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.43 10.96 21.82 0.24 -46.19 16 2 C 0.03 1.72 5.15 85.23 0.44 2.16 16 3 Si 0.98 40.47 29.59 68.60 2.03 42.50 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.51 -28.83 9.03 23.38 0.21 -28.62 16 8 H 0.07 3.70 7.90 -2.91 -0.02 3.67 16 9 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 10 C -0.20 -10.05 9.74 22.48 0.22 -9.83 16 11 C -0.16 -7.27 8.91 22.15 0.20 -7.07 16 12 C 0.12 4.89 6.62 38.67 0.26 5.14 16 13 N -0.75 -23.90 5.13 -319.99 -1.64 -25.54 16 14 C 0.16 4.21 1.78 44.68 0.08 4.29 16 15 H 0.06 1.68 5.49 -2.39 -0.01 1.66 16 16 C -0.13 -2.41 4.88 30.21 0.15 -2.27 16 17 C -0.14 -2.30 5.92 31.39 0.19 -2.12 16 18 C 0.05 0.89 6.01 87.15 0.52 1.41 16 19 N -0.67 -12.20 6.91 -527.72 -3.65 -15.85 16 20 C 0.06 1.21 5.87 83.94 0.49 1.70 16 21 C -0.16 -3.76 4.88 28.92 0.14 -3.62 16 22 C -0.18 -8.23 9.82 22.15 0.22 -8.01 16 23 C -0.14 -7.61 8.63 22.48 0.19 -7.42 16 24 H 0.28 14.13 8.30 -92.71 -0.77 13.36 16 25 H 0.09 4.55 8.06 -2.91 -0.02 4.52 16 26 H 0.11 4.31 6.17 -2.91 -0.02 4.30 16 27 H 0.39 11.22 8.52 -92.71 -0.79 10.43 16 28 H 0.07 1.37 7.88 -2.39 -0.02 1.35 16 29 H 0.08 1.23 6.79 -2.39 -0.02 1.21 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.08 6.51 -2.39 -0.02 1.07 16 34 H 0.35 5.43 7.35 -89.69 -0.66 4.77 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.36 7.24 -2.39 -0.02 1.34 16 37 H 0.07 1.51 7.59 -2.39 -0.02 1.49 16 38 H 0.05 1.52 7.92 -2.38 -0.02 1.50 16 39 H 0.11 4.43 8.06 -2.92 -0.02 4.41 16 40 H 0.10 5.67 6.19 -2.91 -0.02 5.65 16 Total: -1.00 -61.19 309.25 -0.23 -61.42 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -0.40 Total: 36.01 kcal Atomic # 6 Polarization: -55.54 SS G_CDS: 3.19 Total: -52.35 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -5.05 Total: -87.58 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -61.19 -0.23 -61.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129041831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.848 kcal (2) G-P(sol) polarization free energy of solvation -61.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds