Wall clock time and date at job start Mon Mar 30 2020 06:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99810 * 2 1 4 4 H 1.48496 * 109.47588 * 270.00211 * 3 2 1 5 5 H 1.48507 * 109.47270 * 30.00345 * 3 2 1 6 6 H 1.48500 * 109.47293 * 149.99767 * 3 2 1 7 7 C 1.37874 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00477 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47334 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47502 * 180.02562 * 11 10 9 13 13 C 1.46262 * 110.99886 * 190.14306 * 12 11 10 14 14 C 1.52375 * 111.37134 * 323.45868 * 13 12 11 15 15 C 1.51233 * 113.09216 * 290.92051 * 14 13 12 16 16 N 1.47290 * 110.03066 * 63.12276 * 15 14 13 17 17 C 1.40088 * 117.67430 * 278.66178 * 16 15 14 18 18 C 1.38626 * 120.39616 * 247.27385 * 17 16 15 19 19 C 1.38352 * 119.72347 * 177.94173 * 18 17 16 20 20 C 1.38265 * 120.29746 * 0.19023 * 19 18 17 21 21 C 1.38378 * 120.22680 * 0.58829 * 20 19 18 22 22 C 1.38519 * 119.67903 * 359.53585 * 21 20 19 23 23 H 0.96998 * 120.00526 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47306 * 59.99786 * 9 7 2 25 25 H 1.09002 * 109.46731 * 299.99708 * 9 7 2 26 26 H 1.09006 * 109.47203 * 59.99688 * 10 9 7 27 27 H 1.09003 * 109.47614 * 300.00043 * 10 9 7 28 28 H 1.09006 * 109.46786 * 59.99977 * 11 10 9 29 29 H 1.09003 * 109.47251 * 300.00811 * 11 10 9 30 30 H 1.09002 * 109.10059 * 83.95098 * 13 12 11 31 31 H 1.09008 * 109.09670 * 203.03590 * 13 12 11 32 32 H 1.09000 * 108.75570 * 51.85537 * 14 13 12 33 33 H 1.09006 * 108.75568 * 169.98643 * 14 13 12 34 34 H 1.09004 * 109.38145 * 183.29592 * 15 14 13 35 35 H 1.09002 * 109.38036 * 302.95228 * 15 14 13 36 36 H 0.96997 * 121.15583 * 98.68175 * 16 15 14 37 37 H 1.07999 * 120.14103 * 357.91511 * 18 17 16 38 38 H 1.07996 * 119.85263 * 180.46820 * 19 18 17 39 39 H 1.08001 * 119.88488 * 180.56469 * 20 19 18 40 40 H 1.07998 * 120.16350 * 179.56205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4805 -4.9871 -0.0033 12 7 2.4351 -6.1036 -0.0037 13 6 1.7541 -7.3754 -0.2446 14 6 0.3851 -7.4075 0.4237 15 6 0.4629 -7.4519 1.9334 16 7 1.1026 -6.2264 2.4418 17 6 2.5020 -6.1654 2.4188 18 6 3.2229 -6.1496 3.6027 19 6 4.6058 -6.1323 3.5636 20 6 5.2693 -6.1266 2.3506 21 6 4.5546 -6.1260 1.1657 22 6 3.1699 -6.1408 1.1998 23 1 -0.4851 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6242 -2.5575 0.8881 26 1 2.8721 -3.6050 0.8873 27 1 2.8721 -3.6035 -0.8927 28 1 0.8535 -5.0443 -0.8932 29 1 0.8540 -5.0454 0.8868 30 1 1.6302 -7.5158 -1.3185 31 1 2.3633 -8.1872 0.1530 32 1 -0.1706 -6.5179 0.1273 33 1 -0.1549 -8.2877 0.0745 34 1 -0.5431 -7.5323 2.3453 35 1 1.0478 -8.3191 2.2401 36 1 0.5734 -5.4877 2.7809 37 1 2.7073 -6.1505 4.5517 38 1 5.1696 -6.1277 4.4847 39 1 6.3490 -6.1223 2.3279 40 1 5.0739 -6.1145 0.2188 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131318632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:23 Heat of formation + Delta-G solvation = 41.072284 kcal Electronic energy + Delta-G solvation = -19920.782977 eV Core-core repulsion = 17121.346518 eV Total energy + Delta-G solvation = -2799.436460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.48947 -37.11434 -35.00122 -33.63709 -32.07361 -31.16975 -29.98276 -27.74615 -26.18270 -24.94936 -23.16390 -22.22154 -20.89679 -20.43176 -19.50692 -17.26302 -16.45972 -15.98952 -15.89499 -15.04334 -14.80913 -14.59327 -14.31402 -13.82489 -13.56409 -13.44180 -12.91122 -12.48695 -12.29461 -12.09634 -11.66680 -11.51778 -11.25192 -11.21281 -10.99207 -10.82782 -10.71580 -10.47157 -10.26703 -9.58826 -9.26006 -9.01199 -8.95878 -8.55416 -8.29416 -8.06851 -7.52680 -5.94713 -3.95941 1.55279 1.62421 3.35477 3.41170 3.45575 3.74108 3.97321 4.23232 4.51699 4.81750 5.07027 5.19630 5.23092 5.31101 5.41136 5.44064 5.57912 5.59990 5.74444 5.78931 5.82113 5.91498 6.01017 6.09289 6.17515 6.28819 6.47805 6.53556 6.69348 6.74611 6.88797 6.90604 6.96199 7.25412 7.43384 7.48103 7.75219 7.78331 7.91647 8.06600 8.08870 8.51452 9.11203 9.67662 11.16818 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.005703 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.346969 B = 4908.495585 C = 5525.159530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.101 4.101 11 C 0.045 3.955 12 N -0.496 5.496 13 C 0.064 3.936 14 C -0.185 4.185 15 C 0.142 3.858 16 N -0.786 5.786 17 C 0.147 3.853 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.087 4.087 22 C 0.081 3.919 23 H 0.259 0.741 24 H 0.013 0.987 25 H 0.011 0.989 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.402 0.598 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 -17.394 5.040 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.140 4.140 11 C -0.082 4.082 12 N -0.216 5.216 13 C -0.063 4.063 14 C -0.226 4.226 15 C 0.017 3.983 16 N -0.432 5.432 17 C 0.050 3.950 18 C -0.156 4.156 19 C -0.137 4.137 20 C -0.150 4.150 21 C -0.107 4.107 22 C -0.015 4.015 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.240 0.760 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.227 -17.365 4.570 18.447 hybrid contribution -0.374 1.200 0.677 1.428 sum 3.853 -16.165 5.247 17.426 Atomic orbital electron populations 1.69966 1.06029 1.26434 1.51355 1.25014 0.94828 0.99168 0.95480 0.86620 0.79898 0.83567 0.78097 1.20667 1.21281 1.19887 1.21271 0.93050 0.91090 1.49911 0.92772 1.19025 0.93956 0.91435 0.96755 1.21588 0.99006 0.92932 1.00429 1.22608 0.94167 0.89842 1.01535 1.60298 1.27082 1.03644 1.30613 1.21832 0.92857 0.91293 1.00323 1.22393 0.99526 1.03179 0.97488 1.20881 0.97309 0.87362 0.92713 1.44364 1.01988 1.19488 1.77382 1.18114 0.84732 0.99694 0.92446 1.21306 0.94058 1.02667 0.97576 1.20974 0.93947 1.00986 0.97745 1.21032 0.99597 1.02129 0.92256 1.20927 0.92388 0.99057 0.98316 1.19303 0.93031 1.00401 0.88748 0.93134 0.96864 0.97044 0.93760 0.93224 0.91793 0.91864 0.90718 0.92022 0.90568 0.91391 0.91099 0.92677 0.75999 0.86450 0.86476 0.86223 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.51 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.56 16 10 C -0.10 -2.27 5.13 -26.73 -0.14 -2.40 16 11 C 0.04 0.82 3.38 -3.83 -0.01 0.81 16 12 N -0.50 -8.02 4.74 -171.63 -0.81 -8.84 16 13 C 0.06 0.84 5.80 -4.49 -0.03 0.82 16 14 C -0.19 -2.16 5.26 -27.94 -0.15 -2.30 16 15 C 0.14 1.60 6.58 -4.50 -0.03 1.57 16 16 N -0.79 -10.67 3.48 -58.92 -0.20 -10.88 16 17 C 0.15 2.20 5.62 -83.65 -0.47 1.73 16 18 C -0.13 -1.85 9.99 -39.40 -0.39 -2.24 16 19 C -0.12 -1.49 10.04 -39.53 -0.40 -1.88 16 20 C -0.13 -1.69 10.04 -39.52 -0.40 -2.09 16 21 C -0.09 -1.29 9.98 -39.43 -0.39 -1.68 16 22 C 0.08 1.28 3.45 -83.21 -0.29 1.00 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 1.02 7.39 -51.93 -0.38 0.64 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.19 7.71 -51.93 -0.40 0.79 16 29 H 0.06 1.14 4.24 -51.93 -0.22 0.92 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.78 7.79 -51.92 -0.40 0.37 16 32 H 0.08 1.02 6.00 -51.93 -0.31 0.71 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.40 5.55 8.56 -40.82 -0.35 5.21 16 37 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -31.44 314.07 -10.07 -41.51 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.26 Total: 3.10 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.24 Total: -20.04 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.28 Total: -46.54 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.44 -10.07 -41.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131318632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.578 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds