Wall clock time and date at job start Mon Mar 30 2020 07:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 H 1.08995 * 109.47120 * 178.17648 * 3 2 1 5 5 C 1.50700 * 109.46945 * 58.17958 * 3 2 1 6 6 H 1.08007 * 119.99658 * 240.00087 * 5 3 2 7 7 C 1.37878 * 120.00451 * 59.99881 * 5 3 2 8 8 N 1.31509 * 119.99500 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00201 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47261 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47273 * 120.00177 * 9 7 5 12 12 H 1.48502 * 109.47035 * 240.00053 * 9 7 5 13 13 N 1.46895 * 109.47241 * 298.17851 * 3 2 1 14 14 C 1.46230 * 111.00177 * 180.55097 * 13 3 2 15 15 C 1.52338 * 111.41182 * 36.31314 * 14 13 3 16 16 C 1.51241 * 113.12020 * 69.38055 * 15 14 13 17 17 N 1.47335 * 109.93358 * 297.04651 * 16 15 14 18 18 C 1.40007 * 117.64686 * 81.07967 * 17 16 15 19 19 C 1.38692 * 120.29393 * 112.76707 * 18 17 16 20 20 C 1.38331 * 119.75690 * 181.60354 * 19 18 17 21 21 C 1.38255 * 120.34423 * 0.05637 * 20 19 18 22 22 C 1.38404 * 120.17747 * 359.29742 * 21 20 19 23 23 C 1.38476 * 119.65444 * 0.09308 * 22 21 20 24 24 H 1.09002 * 109.47047 * 184.08961 * 1 2 3 25 25 H 1.08992 * 109.47191 * 304.09332 * 1 2 3 26 26 H 1.09001 * 109.46630 * 64.09786 * 1 2 3 27 27 H 1.08998 * 109.47034 * 239.99684 * 2 1 3 28 28 H 1.09001 * 109.46711 * 120.00168 * 2 1 3 29 29 H 0.97007 * 120.00488 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.09558 * 156.80884 * 14 13 3 31 31 H 1.09003 * 109.09398 * 275.81233 * 14 13 3 32 32 H 1.09003 * 108.75250 * 190.32310 * 15 14 13 33 33 H 1.08998 * 108.75281 * 308.56115 * 15 14 13 34 34 H 1.09001 * 109.38974 * 57.19016 * 16 15 14 35 35 H 1.09004 * 109.39563 * 176.90382 * 16 15 14 36 36 H 0.96994 * 121.17522 * 261.05070 * 17 16 15 37 37 H 1.08000 * 120.12149 * 1.57381 * 19 18 17 38 38 H 1.07998 * 119.82584 * 180.08451 * 20 19 18 39 39 H 1.07998 * 119.91199 * 179.31976 * 21 20 19 40 40 H 1.07998 * 120.16932 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1295 1.4426 0.0327 5 6 1.5012 2.1657 1.2073 6 1 0.8836 3.0427 1.0803 7 6 1.7964 1.7080 2.4739 8 7 2.5488 0.6405 2.6285 9 14 1.1279 2.6042 3.9703 10 1 0.3157 3.7665 3.5293 11 1 0.2791 1.6789 4.7632 12 1 2.2579 3.0800 4.8081 13 7 1.5867 2.1221 -1.2208 14 6 2.0675 3.5025 -1.2614 15 6 3.4666 3.6217 -0.6707 16 6 4.5303 2.9726 -1.5277 17 7 4.2800 1.5241 -1.6277 18 6 3.3259 1.0923 -2.5568 19 6 3.7128 0.3542 -3.6654 20 6 2.7654 -0.0383 -4.5937 21 6 1.4365 0.3023 -4.4222 22 6 1.0419 1.0273 -3.3113 23 6 1.9854 1.4114 -2.3732 24 1 -0.3633 -1.0251 0.0733 25 1 -0.3633 0.5760 0.8510 26 1 -0.3632 0.4489 -0.9245 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.7569 0.3186 3.5196 30 1 2.0875 3.8428 -2.2967 31 1 1.3853 4.1346 -0.6928 32 1 3.7082 4.6780 -0.5524 33 1 3.4737 3.1492 0.3115 34 1 4.5105 3.4130 -2.5245 35 1 5.5093 3.1406 -1.0786 36 1 4.7597 0.8920 -1.0698 37 1 4.7502 0.0872 -3.8036 38 1 3.0653 -0.6143 -5.4567 39 1 0.7043 0.0016 -5.1570 40 1 0.0037 1.2930 -3.1772 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131330254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:00 Heat of formation + Delta-G solvation = 54.692342 kcal Electronic energy + Delta-G solvation = -21056.123382 eV Core-core repulsion = 18257.277532 eV Total energy + Delta-G solvation = -2798.845850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05037 -36.79037 -34.75532 -32.98029 -31.64477 -30.50316 -29.65475 -27.19415 -25.76745 -24.75955 -23.23773 -21.77306 -20.74181 -20.32151 -18.71398 -16.84151 -16.03455 -15.58581 -15.36112 -14.76284 -14.43509 -14.16728 -13.85289 -13.22198 -13.16041 -12.80219 -12.53872 -12.09085 -11.95894 -11.53052 -11.52657 -11.27899 -10.97318 -10.85210 -10.77764 -10.53125 -10.29111 -10.20698 -9.74673 -9.46991 -9.34607 -8.79325 -8.50491 -8.38153 -8.10440 -7.46921 -6.82430 -5.97257 -3.98343 1.89942 1.94844 3.29334 3.38393 3.42233 4.20968 4.32628 4.43239 5.01818 5.34437 5.42068 5.48612 5.50031 5.76276 5.79689 5.92369 6.06755 6.12578 6.22909 6.26515 6.40297 6.53513 6.59139 6.69375 6.77130 6.85605 6.87834 6.97356 7.14901 7.21257 7.23135 7.30373 7.47390 7.64124 7.77003 7.87132 7.91954 8.03279 8.27585 8.41111 8.52787 8.79691 9.07031 9.63664 11.08724 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025332 B = 0.008152 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.066532 B = 3433.928718 C = 3844.575400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.207 3.793 4 H 0.042 0.958 5 C -0.489 4.489 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.495 5.495 14 C 0.086 3.914 15 C -0.191 4.191 16 C 0.147 3.853 17 N -0.781 5.781 18 C 0.147 3.853 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.096 4.096 23 C 0.098 3.902 24 H 0.012 0.988 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.010 0.990 28 H 0.087 0.913 29 H 0.257 0.743 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.399 0.601 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 1.411 -10.279 10.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.102 3.898 4 H 0.059 0.941 5 C -0.528 4.528 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.217 5.217 14 C -0.041 4.041 15 C -0.231 4.231 16 C 0.022 3.978 17 N -0.427 5.427 18 C 0.049 3.951 19 C -0.162 4.162 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.116 4.116 23 C 0.002 3.998 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.236 0.764 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.787 1.494 -10.148 10.412 hybrid contribution 0.595 0.092 1.165 1.311 sum 2.382 1.586 -8.983 9.428 Atomic orbital electron populations 1.21478 0.97686 0.97350 1.01241 1.21525 0.94985 0.98694 0.99559 1.19658 0.96162 0.90060 0.83921 0.94067 1.21099 1.30465 1.11555 0.89711 0.92387 1.24847 0.95507 0.95123 0.98612 1.69894 1.37923 1.23220 1.22085 0.86596 0.78707 0.79808 0.83233 1.19868 1.21214 1.21353 1.60476 1.58756 1.01224 1.01227 1.21470 0.93974 0.90540 0.98137 1.22405 0.96398 1.00120 1.04170 1.20858 0.97299 0.81367 0.98227 1.44224 1.47284 1.05536 1.45612 1.18256 0.89137 0.97505 0.90177 1.21306 0.98963 1.01972 0.94000 1.20838 0.93302 1.01469 0.99196 1.20957 0.95789 1.00527 0.98245 1.20929 0.99204 0.98133 0.93329 1.19628 0.90235 0.97357 0.92619 0.96913 0.92310 0.94305 0.97083 0.89507 0.93269 0.94183 0.91161 0.92880 0.87537 0.93655 0.91891 0.76394 0.87014 0.87086 0.86823 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.53 37.16 0.35 -2.40 16 2 C -0.11 -2.65 5.16 -26.73 -0.14 -2.78 16 3 C 0.21 4.87 0.83 -68.87 -0.06 4.81 16 4 H 0.04 1.03 3.99 -51.93 -0.21 0.82 16 5 C -0.49 -12.63 5.49 -34.44 -0.19 -12.82 16 6 H 0.06 1.54 6.97 -52.48 -0.37 1.18 16 7 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 8 N -0.89 -24.43 11.34 55.43 0.63 -23.80 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.50 -10.45 4.00 -165.44 -0.66 -11.11 16 14 C 0.09 1.67 5.16 -4.53 -0.02 1.64 16 15 C -0.19 -3.48 5.18 -27.96 -0.14 -3.62 16 16 C 0.15 2.40 6.58 -4.47 -0.03 2.37 16 17 N -0.78 -13.81 3.54 -58.89 -0.21 -14.02 16 18 C 0.15 2.67 5.31 -83.67 -0.44 2.23 16 19 C -0.14 -2.26 9.99 -39.38 -0.39 -2.66 16 20 C -0.13 -1.89 10.03 -39.54 -0.40 -2.29 16 21 C -0.14 -2.04 10.04 -39.51 -0.40 -2.44 16 22 C -0.10 -1.69 9.67 -39.43 -0.38 -2.07 16 23 C 0.10 1.90 3.05 -83.19 -0.25 1.64 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 1.44 7.01 -51.93 -0.36 1.08 16 26 H 0.04 0.84 7.47 -51.93 -0.39 0.45 16 27 H 0.01 0.25 6.78 -51.93 -0.35 -0.10 16 28 H 0.09 2.34 6.12 -51.93 -0.32 2.02 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.04 0.72 7.78 -51.93 -0.40 0.32 16 31 H 0.07 1.41 7.42 -51.93 -0.39 1.02 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.11 2.35 5.07 -51.93 -0.26 2.09 16 34 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.40 7.12 8.69 -40.82 -0.35 6.77 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 301.42 15.07 4.54 4.54 Total: -1.00 -27.07 301.42 -9.23 -36.30 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.92 Total: 9.04 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.59 Total: -16.89 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.24 Total: -48.92 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.07 -9.23 -36.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131330254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.989 kcal (2) G-P(sol) polarization free energy of solvation -27.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds