Wall clock time and date at job start Mon Mar 30 2020 07:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 H 1.08995 * 109.47120 * 178.17648 * 3 2 1 5 5 C 1.50700 * 109.46945 * 58.17958 * 3 2 1 6 6 H 1.08007 * 119.99658 * 240.00087 * 5 3 2 7 7 C 1.37878 * 120.00451 * 59.99881 * 5 3 2 8 8 N 1.31509 * 119.99500 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00201 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47261 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47273 * 120.00177 * 9 7 5 12 12 H 1.48502 * 109.47035 * 240.00053 * 9 7 5 13 13 N 1.46895 * 109.47241 * 298.17851 * 3 2 1 14 14 C 1.46230 * 111.00177 * 180.55097 * 13 3 2 15 15 C 1.52338 * 111.41182 * 36.31314 * 14 13 3 16 16 C 1.51241 * 113.12020 * 69.38055 * 15 14 13 17 17 N 1.47335 * 109.93358 * 297.04651 * 16 15 14 18 18 C 1.40007 * 117.64686 * 81.07967 * 17 16 15 19 19 C 1.38692 * 120.29393 * 112.76707 * 18 17 16 20 20 C 1.38331 * 119.75690 * 181.60354 * 19 18 17 21 21 C 1.38255 * 120.34423 * 0.05637 * 20 19 18 22 22 C 1.38404 * 120.17747 * 359.29742 * 21 20 19 23 23 C 1.38476 * 119.65444 * 0.09308 * 22 21 20 24 24 H 1.09002 * 109.47047 * 184.08961 * 1 2 3 25 25 H 1.08992 * 109.47191 * 304.09332 * 1 2 3 26 26 H 1.09001 * 109.46630 * 64.09786 * 1 2 3 27 27 H 1.08998 * 109.47034 * 239.99684 * 2 1 3 28 28 H 1.09001 * 109.46711 * 120.00168 * 2 1 3 29 29 H 0.97007 * 120.00488 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.09558 * 156.80884 * 14 13 3 31 31 H 1.09003 * 109.09398 * 275.81233 * 14 13 3 32 32 H 1.09003 * 108.75250 * 190.32310 * 15 14 13 33 33 H 1.08998 * 108.75281 * 308.56115 * 15 14 13 34 34 H 1.09001 * 109.38974 * 57.19016 * 16 15 14 35 35 H 1.09004 * 109.39563 * 176.90382 * 16 15 14 36 36 H 0.96994 * 121.17522 * 261.05070 * 17 16 15 37 37 H 1.08000 * 120.12149 * 1.57381 * 19 18 17 38 38 H 1.07998 * 119.82584 * 180.08451 * 20 19 18 39 39 H 1.07998 * 119.91199 * 179.31976 * 21 20 19 40 40 H 1.07998 * 120.16932 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1295 1.4426 0.0327 5 6 1.5012 2.1657 1.2073 6 1 0.8836 3.0427 1.0803 7 6 1.7964 1.7080 2.4739 8 7 2.5488 0.6405 2.6285 9 14 1.1279 2.6042 3.9703 10 1 0.3157 3.7665 3.5293 11 1 0.2791 1.6789 4.7632 12 1 2.2579 3.0800 4.8081 13 7 1.5867 2.1221 -1.2208 14 6 2.0675 3.5025 -1.2614 15 6 3.4666 3.6217 -0.6707 16 6 4.5303 2.9726 -1.5277 17 7 4.2800 1.5241 -1.6277 18 6 3.3259 1.0923 -2.5568 19 6 3.7128 0.3542 -3.6654 20 6 2.7654 -0.0383 -4.5937 21 6 1.4365 0.3023 -4.4222 22 6 1.0419 1.0273 -3.3113 23 6 1.9854 1.4114 -2.3732 24 1 -0.3633 -1.0251 0.0733 25 1 -0.3633 0.5760 0.8510 26 1 -0.3632 0.4489 -0.9245 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.7569 0.3186 3.5196 30 1 2.0875 3.8428 -2.2967 31 1 1.3853 4.1346 -0.6928 32 1 3.7082 4.6780 -0.5524 33 1 3.4737 3.1492 0.3115 34 1 4.5105 3.4130 -2.5245 35 1 5.5093 3.1406 -1.0786 36 1 4.7597 0.8920 -1.0698 37 1 4.7502 0.0872 -3.8036 38 1 3.0653 -0.6143 -5.4567 39 1 0.7043 0.0016 -5.1570 40 1 0.0037 1.2930 -3.1772 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131330254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:59 Heat of formation + Delta-G solvation = 40.087352 kcal Electronic energy + Delta-G solvation = -21056.756702 eV Core-core repulsion = 18257.277532 eV Total energy + Delta-G solvation = -2799.479169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48657 -38.19644 -36.29530 -34.72862 -33.28158 -32.16210 -30.96673 -28.83440 -27.45492 -26.26950 -25.00230 -23.08721 -22.40492 -21.69326 -20.35744 -18.17127 -17.88068 -17.12809 -17.01900 -16.39244 -15.80001 -15.63276 -15.45304 -14.89132 -14.51744 -14.30025 -14.05542 -13.91590 -13.53474 -13.15122 -12.87978 -12.85130 -12.75885 -12.56729 -12.30871 -12.10416 -12.02916 -11.82664 -11.56311 -11.24243 -11.14910 -10.73019 -10.40688 -9.81316 -9.44441 -8.89966 -8.34186 -8.00154 -6.05674 0.63700 0.66913 1.38758 1.43351 1.52185 2.46295 2.91113 3.04166 3.28190 3.51743 4.10200 4.23585 4.35010 4.37479 4.56025 4.59660 4.68644 4.75204 4.76917 4.81699 4.88328 4.93333 4.99427 5.02893 5.23132 5.25506 5.33174 5.55297 5.58033 5.61983 5.73533 5.74517 5.80156 5.85066 5.94726 6.03984 6.13074 6.44629 6.54507 6.66806 7.06060 7.07729 7.22520 7.59167 9.04073 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025332 B = 0.008152 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.066532 B = 3433.928718 C = 3844.575400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C 0.219 3.781 4 H 0.031 0.969 5 C -0.488 4.488 6 H 0.044 0.956 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.939 3.061 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.284 1.284 13 N -0.504 5.504 14 C 0.085 3.915 15 C -0.183 4.183 16 C 0.151 3.849 17 N -0.785 5.785 18 C 0.128 3.872 19 C -0.144 4.144 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.109 4.109 23 C 0.067 3.933 24 H 0.027 0.973 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.012 0.988 28 H 0.056 0.944 29 H 0.256 0.744 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.394 0.606 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 1.255 -12.289 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C 0.113 3.887 4 H 0.048 0.952 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.179 4.179 8 N -0.556 5.556 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.211 1.211 13 N -0.225 5.225 14 C -0.042 4.042 15 C -0.223 4.223 16 C 0.026 3.974 17 N -0.430 5.430 18 C 0.031 3.969 19 C -0.165 4.165 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.030 4.030 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.230 0.770 37 H 0.146 0.854 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.960 1.351 -12.174 12.405 hybrid contribution 0.524 0.130 1.683 1.767 sum 2.484 1.481 -10.492 10.883 Atomic orbital electron populations 1.21340 0.96748 0.97923 1.00587 1.21370 0.95690 0.98887 0.97990 1.19347 0.95256 0.89567 0.84526 0.95209 1.21236 1.29620 1.10968 0.90895 0.93790 1.25412 0.95983 0.95810 1.00744 1.70006 1.39035 1.24283 1.22249 0.85787 0.78081 0.78782 0.80633 1.19724 1.21395 1.21060 1.60290 1.59220 1.01812 1.01162 1.21468 0.94260 0.89759 0.98688 1.22297 0.96614 1.01167 1.02239 1.20892 0.97284 0.80701 0.98511 1.44289 1.47158 1.05911 1.45646 1.18432 0.88786 0.98545 0.91150 1.21542 1.00290 1.01190 0.93466 1.21265 0.92734 1.00327 0.99544 1.21305 0.96849 0.98993 0.97697 1.21073 0.98887 0.98819 0.94094 1.19762 0.91410 0.99080 0.92704 0.95440 0.94561 0.93416 0.96915 0.92531 0.93516 0.92800 0.92743 0.90954 0.91571 0.92402 0.90111 0.76984 0.85401 0.83547 0.83640 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 9.53 71.98 0.69 -4.29 16 2 C -0.10 -4.95 5.16 30.59 0.16 -4.79 16 3 C 0.22 10.51 0.83 44.17 0.04 10.54 16 4 H 0.03 1.53 3.99 -2.39 -0.01 1.52 16 5 C -0.49 -25.81 5.49 25.60 0.14 -25.67 16 6 H 0.04 2.40 6.97 -2.91 -0.02 2.38 16 7 C 0.02 1.00 5.30 84.66 0.45 1.45 16 8 N -0.91 -51.32 11.34 21.45 0.24 -51.08 16 9 Si 0.94 43.75 29.54 68.60 2.03 45.78 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 N -0.50 -21.34 4.00 -677.34 -2.71 -24.05 16 14 C 0.09 3.32 5.16 86.21 0.45 3.76 16 15 C -0.18 -6.66 5.18 29.80 0.15 -6.50 16 16 C 0.15 4.74 6.58 85.65 0.56 5.30 16 17 N -0.79 -27.30 3.54 -340.23 -1.20 -28.50 16 18 C 0.13 4.50 5.31 38.13 0.20 4.70 16 19 C -0.14 -4.22 9.99 22.40 0.22 -3.99 16 20 C -0.12 -3.04 10.03 22.30 0.22 -2.81 16 21 C -0.13 -3.44 10.04 22.31 0.22 -3.22 16 22 C -0.11 -3.63 9.67 22.37 0.22 -3.41 16 23 C 0.07 2.52 3.05 37.88 0.12 2.63 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.04 1.79 7.01 -2.39 -0.02 1.77 16 26 H 0.05 2.06 7.47 -2.39 -0.02 2.04 16 27 H 0.01 0.59 6.78 -2.39 -0.02 0.57 16 28 H 0.06 3.12 6.12 -2.39 -0.01 3.11 16 29 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 30 H 0.05 1.91 7.78 -2.39 -0.02 1.89 16 31 H 0.05 2.23 7.42 -2.39 -0.02 2.21 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.98 5.07 -2.39 -0.01 2.97 16 34 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 35 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.39 14.11 8.69 -92.71 -0.81 13.30 16 37 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 38 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 40 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -58.59 301.42 2.43 -56.16 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.23 Total: 27.98 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 3.84 Total: -26.30 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -3.67 Total: -103.63 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -58.59 2.43 -56.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131330254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.250 kcal (2) G-P(sol) polarization free energy of solvation -58.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds