Wall clock time and date at job start Mon Mar 30 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00509 * 2 1 4 4 H 1.48503 * 109.47233 * 266.82328 * 3 2 1 5 5 H 1.48502 * 109.46750 * 26.81579 * 3 2 1 6 6 H 1.48499 * 109.47348 * 146.81579 * 3 2 1 7 7 C 1.37881 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00069 * 356.12217 * 7 2 1 9 9 C 1.50701 * 119.99822 * 176.12365 * 7 2 1 10 10 H 1.08999 * 109.47259 * 1.97623 * 9 7 2 11 11 C 1.50702 * 109.47250 * 241.96981 * 9 7 2 12 12 C 1.38235 * 120.00064 * 285.63140 * 11 9 7 13 13 C 1.38230 * 119.99636 * 179.78780 * 12 11 9 14 14 C 1.38231 * 120.00189 * 0.44014 * 13 12 11 15 15 C 1.38233 * 120.00300 * 359.81439 * 14 13 12 16 16 C 1.38235 * 119.99373 * 105.90408 * 11 9 7 17 17 N 1.46903 * 109.46964 * 121.97285 * 9 7 2 18 18 C 1.47442 * 110.99986 * 178.98353 * 17 9 7 19 19 C 1.54319 * 107.23430 * 123.25422 * 18 17 9 20 20 C 1.55146 * 103.01914 * 22.28363 * 19 18 17 21 21 C 1.47853 * 111.00083 * 299.82452 * 17 9 7 22 22 H 1.09004 * 110.37193 * 332.46503 * 21 17 9 23 23 C 1.52995 * 110.37432 * 94.80433 * 21 17 9 24 24 N 1.46895 * 109.47234 * 184.98101 * 23 21 17 25 25 H 0.96996 * 119.99570 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99949 * 359.97438 * 12 11 9 27 27 H 1.08000 * 119.99944 * 180.27428 * 13 12 11 28 28 H 1.08003 * 120.00058 * 179.83218 * 14 13 12 29 29 H 1.07992 * 120.00555 * 179.97438 * 15 14 13 30 30 H 1.07994 * 120.00682 * 359.97438 * 16 11 9 31 31 H 1.08997 * 109.88908 * 242.66090 * 18 17 9 32 32 H 1.08996 * 109.89067 * 3.68719 * 18 17 9 33 33 H 1.09005 * 110.70560 * 140.66076 * 19 18 17 34 34 H 1.08995 * 110.70803 * 263.90030 * 19 18 17 35 35 H 1.08998 * 110.98742 * 82.43762 * 20 19 18 36 36 H 1.08994 * 110.99012 * 206.21121 * 20 19 18 37 37 H 1.09007 * 109.47315 * 304.98785 * 23 21 17 38 38 H 1.09003 * 109.46789 * 64.98139 * 23 21 17 39 39 H 1.00905 * 111.00283 * 182.77510 * 24 23 21 40 40 H 1.00893 * 111.00242 * 306.73318 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5640 2.0075 -1.3979 5 1 1.4147 2.6711 0.6316 6 1 3.5115 1.4604 0.7663 7 6 2.0045 -1.1941 -0.0005 8 1 1.4663 -2.1284 0.0623 9 6 3.5089 -1.1957 -0.0888 10 1 3.8727 -0.1684 -0.1089 11 6 3.9376 -1.9053 -1.3472 12 6 3.8578 -3.2832 -1.4251 13 6 4.2469 -3.9337 -2.5811 14 6 4.7244 -3.2071 -3.6557 15 6 4.8091 -1.8297 -3.5760 16 6 4.4159 -1.1787 -2.4215 17 7 4.0672 -1.8900 1.0793 18 6 5.5396 -1.9323 1.0149 19 6 6.0728 -1.2755 2.3055 20 6 4.8777 -1.4102 3.2857 21 6 3.6701 -1.2179 2.3350 22 1 3.4918 -0.1573 2.1577 23 6 2.4205 -1.8786 2.9206 24 7 1.9744 -1.1241 4.0993 25 1 -0.4849 0.8400 -0.0004 26 1 3.4886 -3.8511 -0.5839 27 1 4.1804 -5.0098 -2.6436 28 1 5.0310 -3.7156 -4.5579 29 1 5.1825 -1.2621 -4.4154 30 1 4.4820 -0.1026 -2.3592 31 1 5.8786 -2.9667 0.9578 32 1 5.8887 -1.3792 0.1430 33 1 6.9423 -1.8147 2.6815 34 1 6.3134 -0.2265 2.1331 35 1 4.8593 -2.3984 3.7453 36 1 4.9058 -0.6291 4.0453 37 1 1.6282 -1.8852 2.1720 38 1 2.6537 -2.9029 3.2117 39 1 1.1769 -1.5663 4.5312 40 1 2.7270 -1.0096 4.7615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131858890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:40 Heat of formation + Delta-G solvation = 31.912334 kcal Electronic energy + Delta-G solvation = -20442.847013 eV Core-core repulsion = 17643.013348 eV Total energy + Delta-G solvation = -2799.833665 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.21733 -37.82994 -33.92140 -33.38695 -31.65570 -30.18784 -29.40870 -28.16979 -26.58417 -23.69231 -22.46466 -21.85531 -20.85693 -19.75061 -19.04671 -17.05585 -16.12413 -15.60337 -15.33111 -14.75120 -14.41983 -14.17852 -13.88346 -13.63976 -12.98559 -12.69947 -12.67883 -12.43943 -12.24052 -11.99321 -11.89053 -11.53873 -11.22990 -10.95844 -10.79573 -10.64087 -10.33211 -10.24018 -9.95848 -9.89222 -9.78500 -9.32324 -8.64747 -8.21032 -8.00248 -7.84649 -7.27456 -6.16391 -4.13713 2.10733 2.16356 3.22930 3.28827 3.32830 4.33314 4.47640 4.75399 5.11099 5.21135 5.27160 5.35438 5.49730 5.53498 5.61824 5.74561 5.85785 5.94166 6.01259 6.09556 6.17521 6.25365 6.27213 6.29682 6.34461 6.39889 6.52408 6.66761 6.74209 6.80210 6.91542 7.10709 7.16136 7.25912 7.44074 7.51313 7.77491 7.77653 8.01386 8.07020 8.11967 8.55914 8.91804 9.45950 10.95537 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.009957 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.126411 B = 2811.433708 C = 3664.959473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.085 3.915 3 Si 0.869 3.131 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.488 4.488 8 H 0.083 0.917 9 C 0.206 3.794 10 H 0.018 0.982 11 C -0.028 4.028 12 C -0.094 4.094 13 C -0.129 4.129 14 C -0.148 4.148 15 C -0.124 4.124 16 C -0.135 4.135 17 N -0.517 5.517 18 C 0.040 3.960 19 C -0.141 4.141 20 C -0.132 4.132 21 C 0.097 3.903 22 H 0.059 0.941 23 C 0.075 3.925 24 N -0.849 5.849 25 H 0.266 0.734 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.012 0.988 39 H 0.335 0.665 40 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.995 -3.633 2.107 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.120 4.120 3 Si 0.697 3.303 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.100 3.900 10 H 0.035 0.965 11 C -0.029 4.029 12 C -0.112 4.112 13 C -0.147 4.147 14 C -0.166 4.166 15 C -0.143 4.143 16 C -0.154 4.154 17 N -0.242 5.242 18 C -0.088 4.088 19 C -0.179 4.179 20 C -0.170 4.170 21 C -0.012 4.012 22 H 0.077 0.923 23 C -0.055 4.055 24 N -0.377 5.377 25 H 0.076 0.924 26 H 0.142 0.858 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.030 0.970 39 H 0.147 0.853 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.466 -3.421 1.562 10.186 hybrid contribution 0.930 0.971 0.381 1.397 sum 10.396 -2.450 1.942 10.856 Atomic orbital electron populations 1.69849 1.06082 1.27128 1.48818 1.24986 0.94673 0.98458 0.93880 0.87028 0.80271 0.84575 0.78417 1.20355 1.21187 1.19219 1.20659 0.87225 0.94749 1.50017 0.89898 1.19023 0.96216 0.90486 0.84309 0.96473 1.20303 0.92155 0.93894 0.96534 1.20961 0.98603 0.94374 0.97252 1.21071 1.00502 0.99037 0.94068 1.20855 1.03175 0.94163 0.98455 1.20907 1.01381 0.94547 0.97429 1.20979 1.01072 0.99230 0.94082 1.63718 1.05189 1.52889 1.02442 1.22758 0.90326 0.99734 0.95985 1.22753 0.97978 1.00420 0.96792 1.22838 0.95490 1.01054 0.97639 1.22150 0.92855 0.97599 0.88576 0.92273 1.21976 0.98862 0.92084 0.92556 1.58695 1.10711 1.57305 1.11027 0.92387 0.85792 0.87253 0.87455 0.87343 0.87487 0.91785 0.93569 0.91783 0.92239 0.91562 0.91789 0.87032 0.96957 0.85308 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.96 55.43 0.77 -25.01 16 2 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 3 Si 0.87 21.34 26.30 -169.99 -4.47 16.87 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.36 5.76 56.52 0.33 -6.04 16 7 C -0.49 -12.83 6.19 -34.44 -0.21 -13.04 16 8 H 0.08 2.41 7.80 -52.49 -0.41 2.00 16 9 C 0.21 4.68 1.25 -70.01 -0.09 4.60 16 10 H 0.02 0.42 4.31 -51.93 -0.22 0.20 16 11 C -0.03 -0.59 3.58 -104.62 -0.37 -0.96 16 12 C -0.09 -1.84 9.09 -39.59 -0.36 -2.20 16 13 C -0.13 -2.21 10.05 -39.59 -0.40 -2.60 16 14 C -0.15 -2.42 10.05 -39.59 -0.40 -2.82 16 15 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 16 C -0.13 -2.68 9.67 -39.58 -0.38 -3.07 16 17 N -0.52 -10.47 4.19 -218.24 -0.91 -11.39 16 18 C 0.04 0.71 6.13 -2.84 -0.02 0.69 16 19 C -0.14 -2.15 6.94 -24.90 -0.17 -2.32 16 20 C -0.13 -2.08 5.80 -24.59 -0.14 -2.22 16 21 C 0.10 1.91 2.26 -66.19 -0.15 1.76 16 22 H 0.06 1.36 6.06 -51.93 -0.31 1.04 16 23 C 0.08 1.48 6.41 -3.83 -0.02 1.45 16 24 N -0.85 -14.56 9.64 -10.37 -0.10 -14.66 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.12 2.48 7.89 -52.48 -0.41 2.06 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.11 2.09 7.99 -52.49 -0.42 1.67 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.84 7.00 -51.93 -0.36 0.48 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.98 7.97 -51.93 -0.41 0.57 16 36 H 0.06 0.92 8.02 -51.93 -0.42 0.50 16 37 H 0.11 2.66 5.75 -51.93 -0.30 2.36 16 38 H 0.01 0.23 8.03 -51.93 -0.42 -0.19 16 39 H 0.34 5.10 9.08 -39.29 -0.36 4.75 16 40 H 0.32 4.74 8.17 -39.30 -0.32 4.42 16 LS Contribution 311.99 15.07 4.70 4.70 Total: -1.00 -28.44 311.99 -9.34 -37.78 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.12 Total: 12.77 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -3.22 Total: -21.07 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.24 Total: -51.05 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.47 Total: 16.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.44 -9.34 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131858890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.692 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds