Wall clock time and date at job start Mon Mar 30 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00509 * 2 1 4 4 H 1.48503 * 109.47233 * 266.82328 * 3 2 1 5 5 H 1.48502 * 109.46750 * 26.81579 * 3 2 1 6 6 H 1.48499 * 109.47348 * 146.81579 * 3 2 1 7 7 C 1.37881 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00069 * 356.12217 * 7 2 1 9 9 C 1.50701 * 119.99822 * 176.12365 * 7 2 1 10 10 H 1.08999 * 109.47259 * 1.97623 * 9 7 2 11 11 C 1.50702 * 109.47250 * 241.96981 * 9 7 2 12 12 C 1.38235 * 120.00064 * 285.63140 * 11 9 7 13 13 C 1.38230 * 119.99636 * 179.78780 * 12 11 9 14 14 C 1.38231 * 120.00189 * 0.44014 * 13 12 11 15 15 C 1.38233 * 120.00300 * 359.81439 * 14 13 12 16 16 C 1.38235 * 119.99373 * 105.90408 * 11 9 7 17 17 N 1.46903 * 109.46964 * 121.97285 * 9 7 2 18 18 C 1.47442 * 110.99986 * 178.98353 * 17 9 7 19 19 C 1.54319 * 107.23430 * 123.25422 * 18 17 9 20 20 C 1.55146 * 103.01914 * 22.28363 * 19 18 17 21 21 C 1.47853 * 111.00083 * 299.82452 * 17 9 7 22 22 H 1.09004 * 110.37193 * 332.46503 * 21 17 9 23 23 C 1.52995 * 110.37432 * 94.80433 * 21 17 9 24 24 N 1.46895 * 109.47234 * 184.98101 * 23 21 17 25 25 H 0.96996 * 119.99570 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99949 * 359.97438 * 12 11 9 27 27 H 1.08000 * 119.99944 * 180.27428 * 13 12 11 28 28 H 1.08003 * 120.00058 * 179.83218 * 14 13 12 29 29 H 1.07992 * 120.00555 * 179.97438 * 15 14 13 30 30 H 1.07994 * 120.00682 * 359.97438 * 16 11 9 31 31 H 1.08997 * 109.88908 * 242.66090 * 18 17 9 32 32 H 1.08996 * 109.89067 * 3.68719 * 18 17 9 33 33 H 1.09005 * 110.70560 * 140.66076 * 19 18 17 34 34 H 1.08995 * 110.70803 * 263.90030 * 19 18 17 35 35 H 1.08998 * 110.98742 * 82.43762 * 20 19 18 36 36 H 1.08994 * 110.99012 * 206.21121 * 20 19 18 37 37 H 1.09007 * 109.47315 * 304.98785 * 23 21 17 38 38 H 1.09003 * 109.46789 * 64.98139 * 23 21 17 39 39 H 1.00905 * 111.00283 * 182.77510 * 24 23 21 40 40 H 1.00893 * 111.00242 * 306.73318 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5640 2.0075 -1.3979 5 1 1.4147 2.6711 0.6316 6 1 3.5115 1.4604 0.7663 7 6 2.0045 -1.1941 -0.0005 8 1 1.4663 -2.1284 0.0623 9 6 3.5089 -1.1957 -0.0888 10 1 3.8727 -0.1684 -0.1089 11 6 3.9376 -1.9053 -1.3472 12 6 3.8578 -3.2832 -1.4251 13 6 4.2469 -3.9337 -2.5811 14 6 4.7244 -3.2071 -3.6557 15 6 4.8091 -1.8297 -3.5760 16 6 4.4159 -1.1787 -2.4215 17 7 4.0672 -1.8900 1.0793 18 6 5.5396 -1.9323 1.0149 19 6 6.0728 -1.2755 2.3055 20 6 4.8777 -1.4102 3.2857 21 6 3.6701 -1.2179 2.3350 22 1 3.4918 -0.1573 2.1577 23 6 2.4205 -1.8786 2.9206 24 7 1.9744 -1.1241 4.0993 25 1 -0.4849 0.8400 -0.0004 26 1 3.4886 -3.8511 -0.5839 27 1 4.1804 -5.0098 -2.6436 28 1 5.0310 -3.7156 -4.5579 29 1 5.1825 -1.2621 -4.4154 30 1 4.4820 -0.1026 -2.3592 31 1 5.8786 -2.9667 0.9578 32 1 5.8887 -1.3792 0.1430 33 1 6.9423 -1.8147 2.6815 34 1 6.3134 -0.2265 2.1331 35 1 4.8593 -2.3984 3.7453 36 1 4.9058 -0.6291 4.0453 37 1 1.6282 -1.8852 2.1720 38 1 2.6537 -2.9029 3.2117 39 1 1.1769 -1.5663 4.5312 40 1 2.7270 -1.0096 4.7615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131858890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:40 Heat of formation + Delta-G solvation = 12.227665 kcal Electronic energy + Delta-G solvation = -20443.700604 eV Core-core repulsion = 17643.013348 eV Total energy + Delta-G solvation = -2800.687256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74774 -39.26507 -35.54453 -35.06643 -33.45703 -31.61666 -30.85031 -29.63054 -28.38670 -25.27512 -24.10692 -23.30351 -22.28413 -21.21324 -20.65021 -19.08406 -17.54278 -17.21909 -16.80753 -16.32985 -15.93438 -15.85093 -15.31422 -15.16345 -14.73365 -14.38888 -14.08909 -14.01821 -13.77781 -13.54115 -13.40948 -13.09502 -12.83185 -12.67541 -12.30524 -12.09503 -11.96219 -11.76164 -11.58255 -11.52054 -11.39101 -11.15123 -10.72329 -9.64399 -9.45378 -9.35049 -8.91378 -8.29593 -6.27414 0.65923 0.72246 1.23309 1.26510 1.32379 2.27733 2.89598 3.20257 3.31906 3.82160 3.84998 4.05217 4.09317 4.21337 4.28012 4.38382 4.41876 4.45100 4.59427 4.64557 4.67182 4.85242 4.88203 4.91520 4.93723 5.00671 5.08036 5.22830 5.26668 5.36504 5.40458 5.47565 5.59864 5.73620 5.77876 5.99454 6.15685 6.29552 6.36878 6.46370 6.69298 6.76440 6.80055 7.34748 8.86552 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.009957 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.126411 B = 2811.433708 C = 3664.959473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.036 3.964 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.469 4.469 8 H 0.040 0.960 9 C 0.214 3.786 10 H 0.002 0.998 11 C -0.056 4.056 12 C -0.109 4.109 13 C -0.126 4.126 14 C -0.138 4.138 15 C -0.122 4.122 16 C -0.155 4.155 17 N -0.523 5.523 18 C 0.039 3.961 19 C -0.133 4.133 20 C -0.120 4.120 21 C 0.090 3.910 22 H 0.024 0.976 23 C 0.087 3.913 24 N -0.855 5.855 25 H 0.264 0.736 26 H 0.110 0.890 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.346 0.654 40 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.018 -4.447 1.735 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.164 4.164 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.508 4.508 8 H 0.059 0.941 9 C 0.107 3.893 10 H 0.020 0.980 11 C -0.057 4.057 12 C -0.127 4.127 13 C -0.143 4.143 14 C -0.156 4.156 15 C -0.139 4.139 16 C -0.174 4.174 17 N -0.248 5.248 18 C -0.089 4.089 19 C -0.172 4.172 20 C -0.158 4.158 21 C -0.018 4.018 22 H 0.042 0.958 23 C -0.044 4.044 24 N -0.386 5.386 25 H 0.073 0.927 26 H 0.128 0.872 27 H 0.157 0.843 28 H 0.166 0.834 29 H 0.158 0.842 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.159 0.841 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.521 -4.245 1.203 13.276 hybrid contribution 0.034 1.067 0.453 1.159 sum 12.555 -3.178 1.655 13.056 Atomic orbital electron populations 1.69980 1.07579 1.27539 1.52054 1.25568 0.95138 1.01325 0.94332 0.86215 0.79387 0.81127 0.78726 1.19586 1.21533 1.18315 1.20666 0.89315 0.92722 1.48084 0.94134 1.18791 0.93740 0.90370 0.86378 0.98022 1.20212 0.94544 0.94747 0.96169 1.20942 0.99677 0.93829 0.98286 1.21414 0.99120 1.00697 0.93114 1.21330 1.01090 0.93848 0.99315 1.21279 1.00109 0.95416 0.97141 1.21118 1.02138 0.99200 0.94959 1.63561 1.07294 1.52206 1.01771 1.22814 0.88283 1.00635 0.97145 1.22745 0.98752 1.00597 0.95080 1.22785 0.93243 1.02614 0.97194 1.22190 0.94764 0.95262 0.89623 0.95828 1.21620 0.97323 0.93115 0.92305 1.58558 1.11910 1.57151 1.11026 0.92689 0.87213 0.84264 0.83444 0.84208 0.88039 0.90590 0.94502 0.88426 0.92392 0.89973 0.89965 0.92148 0.95817 0.84128 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.96 21.45 0.30 -57.28 16 2 C 0.04 2.06 5.47 84.66 0.46 2.53 16 3 Si 0.92 45.62 26.30 68.60 1.80 47.42 16 4 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.26 -12.32 5.76 99.48 0.57 -11.74 16 7 C -0.47 -26.09 6.19 25.60 0.16 -25.93 16 8 H 0.04 2.55 7.80 -2.91 -0.02 2.52 16 9 C 0.21 10.05 1.25 43.42 0.05 10.10 16 10 H 0.00 0.11 4.31 -2.39 -0.01 0.10 16 11 C -0.06 -2.39 3.58 -19.87 -0.07 -2.46 16 12 C -0.11 -4.26 9.09 22.27 0.20 -4.06 16 13 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 14 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 15 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 16 C -0.16 -6.07 9.67 22.27 0.22 -5.86 16 17 N -0.52 -21.41 4.19 -844.37 -3.54 -24.94 16 18 C 0.04 1.32 6.13 86.65 0.53 1.85 16 19 C -0.13 -3.67 6.94 31.78 0.22 -3.45 16 20 C -0.12 -3.48 5.80 31.98 0.19 -3.29 16 21 C 0.09 3.56 2.26 45.38 0.10 3.67 16 22 H 0.02 1.10 6.06 -2.38 -0.01 1.09 16 23 C 0.09 3.50 6.41 86.30 0.55 4.05 16 24 N -0.85 -29.25 9.64 -186.73 -1.80 -31.05 16 25 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 26 H 0.11 4.50 7.89 -2.91 -0.02 4.48 16 27 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.10 3.97 7.99 -2.91 -0.02 3.94 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.04 1.31 7.00 -2.39 -0.02 1.29 16 33 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 2.15 7.97 -2.39 -0.02 2.13 16 36 H 0.08 2.10 8.02 -2.39 -0.02 2.09 16 37 H 0.06 3.07 5.75 -2.38 -0.01 3.05 16 38 H 0.02 0.88 8.03 -2.39 -0.02 0.86 16 39 H 0.35 10.53 9.08 -89.69 -0.81 9.71 16 40 H 0.34 9.51 8.17 -89.70 -0.73 8.78 16 Total: -1.00 -65.97 311.99 -0.59 -66.55 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.64 Total: 33.27 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 3.29 Total: -33.96 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -5.04 Total: -113.28 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.80 Total: 47.42 kcal Total: -65.97 -0.59 -66.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131858890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.781 kcal (2) G-P(sol) polarization free energy of solvation -65.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds