Wall clock time and date at job start Mon Mar 30 2020 06:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48502 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47360 * 300.00358 * 3 2 1 6 6 H 1.48495 * 109.46943 * 60.00907 * 3 2 1 7 7 C 1.37873 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00159 * 163.04124 * 7 2 1 9 9 C 1.50706 * 120.00168 * 343.03354 * 7 2 1 10 10 H 1.08998 * 109.47360 * 214.69717 * 9 7 2 11 11 C 1.50709 * 109.46783 * 334.69544 * 9 7 2 12 12 C 1.38236 * 119.99860 * 292.68793 * 11 9 7 13 13 C 1.38230 * 119.99534 * 179.78846 * 12 11 9 14 14 C 1.38235 * 120.00365 * 0.44444 * 13 12 11 15 15 C 1.38234 * 119.99755 * 359.80718 * 14 13 12 16 16 C 1.38230 * 119.99820 * 112.96394 * 11 9 7 17 17 N 1.46903 * 109.47070 * 94.69142 * 9 7 2 18 18 C 1.48808 * 111.18542 * 318.19661 * 17 9 7 19 19 C 1.54931 * 103.34960 * 159.50368 * 18 17 9 20 20 C 1.54599 * 102.92003 * 322.68880 * 19 18 17 21 21 C 1.47901 * 110.99808 * 75.53134 * 17 9 7 22 22 H 1.09001 * 109.91790 * 333.71201 * 21 17 9 23 23 C 1.52999 * 109.91455 * 94.80272 * 21 17 9 24 24 N 1.46905 * 109.47427 * 304.59668 * 23 21 17 25 25 H 0.97000 * 119.99910 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99798 * 0.02562 * 12 11 9 27 27 H 1.08000 * 119.99659 * 180.27627 * 13 12 11 28 28 H 1.07997 * 119.99916 * 179.83239 * 14 13 12 29 29 H 1.07996 * 119.99908 * 180.02562 * 15 14 13 30 30 H 1.08003 * 120.00087 * 359.97438 * 16 11 9 31 31 H 1.09002 * 110.51793 * 41.07112 * 18 17 9 32 32 H 1.08999 * 110.84098 * 278.09109 * 18 17 9 33 33 H 1.08996 * 110.72794 * 204.33310 * 19 18 17 34 34 H 1.08998 * 110.87751 * 81.11971 * 19 18 17 35 35 H 1.08999 * 110.31142 * 263.03920 * 20 19 18 36 36 H 1.09005 * 110.30307 * 140.87056 * 20 19 18 37 37 H 1.09003 * 109.46859 * 184.59945 * 23 21 17 38 38 H 1.08993 * 109.47307 * 64.60006 * 23 21 17 39 39 H 1.00899 * 110.99456 * 56.04142 * 24 23 21 40 40 H 1.00893 * 111.00439 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0493 -1.2142 -0.2733 9 6 1.3002 -2.4710 0.3797 10 1 1.9940 -3.1253 0.9075 11 6 0.1307 -2.1520 1.2752 12 6 0.3489 -1.6521 2.5454 13 6 -0.7240 -1.3555 3.3650 14 6 -2.0148 -1.5674 2.9179 15 6 -2.2328 -2.0722 1.6496 16 6 -1.1600 -2.3648 0.8284 17 7 0.8185 -3.1445 -0.8336 18 6 0.2349 -2.1694 -1.7943 19 6 0.2866 -2.9245 -3.1462 20 6 1.6229 -3.6972 -3.0597 21 6 1.9323 -3.7981 -1.5546 22 1 2.8690 -3.2867 -1.3329 23 6 2.0304 -5.2676 -1.1400 24 7 2.1631 -5.3567 0.3203 25 1 -0.4850 0.8401 0.0004 26 1 1.3574 -1.4897 2.8959 27 1 -0.5537 -0.9608 4.3557 28 1 -2.8528 -1.3382 3.5593 29 1 -3.2412 -2.2374 1.3002 30 1 -1.3303 -2.7592 -0.1626 31 1 0.8410 -1.2644 -1.8357 32 1 -0.7942 -1.9298 -1.5266 33 1 0.3004 -2.2224 -3.9799 34 1 -0.5524 -3.6140 -3.2384 35 1 2.4120 -3.1469 -3.5721 36 1 1.5130 -4.6922 -3.4909 37 1 2.9019 -5.7210 -1.6123 38 1 1.1304 -5.7951 -1.4559 39 1 1.3992 -4.8863 0.7821 40 1 2.2301 -6.3179 0.6194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131859079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:43 Heat of formation + Delta-G solvation = 49.221935 kcal Electronic energy + Delta-G solvation = -20928.489033 eV Core-core repulsion = 18129.405969 eV Total energy + Delta-G solvation = -2799.083064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.95841 -37.34785 -33.93197 -33.19221 -31.09168 -29.69498 -28.83240 -28.02133 -26.10431 -23.68364 -22.46403 -21.29288 -20.25946 -19.50069 -18.99912 -16.58294 -15.71506 -15.35362 -14.91823 -14.66330 -14.37916 -13.77825 -13.66675 -13.10239 -12.84312 -12.63501 -12.39034 -12.12616 -11.86703 -11.70904 -11.33416 -11.01381 -10.88055 -10.73298 -10.44418 -10.39974 -10.26880 -10.04395 -9.73532 -9.60442 -9.46019 -9.07323 -8.37322 -8.11719 -7.62473 -7.29519 -7.03641 -5.92806 -4.17317 2.72414 2.79352 3.24192 3.35074 3.38568 4.37411 5.02466 5.12002 5.18193 5.36989 5.51690 5.70000 5.80826 5.96716 5.98981 6.01423 6.10567 6.18438 6.27496 6.35143 6.46801 6.54798 6.62857 6.72722 6.83678 6.92003 6.98534 7.06707 7.29813 7.35146 7.43229 7.63524 7.67824 7.72078 7.77547 7.80778 8.02134 8.09948 8.12371 8.30702 8.38173 8.67135 8.86327 9.47888 10.87088 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.010896 C = 0.008217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.314346 B = 2569.221353 C = 3406.908698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.084 3.916 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.211 3.789 10 H 0.062 0.938 11 C 0.038 3.962 12 C -0.124 4.124 13 C -0.134 4.134 14 C -0.158 4.158 15 C -0.137 4.137 16 C -0.074 4.074 17 N -0.518 5.518 18 C 0.056 3.944 19 C -0.134 4.134 20 C -0.120 4.120 21 C 0.071 3.929 22 H 0.057 0.943 23 C 0.083 3.917 24 N -0.850 5.850 25 H 0.261 0.739 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.354 0.646 40 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 -6.280 -1.273 6.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.122 4.122 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.105 3.895 10 H 0.080 0.920 11 C 0.036 3.964 12 C -0.143 4.143 13 C -0.152 4.152 14 C -0.177 4.177 15 C -0.155 4.155 16 C -0.092 4.092 17 N -0.242 5.242 18 C -0.071 4.071 19 C -0.172 4.172 20 C -0.158 4.158 21 C -0.038 4.038 22 H 0.075 0.925 23 C -0.049 4.049 24 N -0.381 5.381 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.137 0.863 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.170 0.830 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.020 -6.127 -1.191 6.325 hybrid contribution 0.112 1.405 -0.277 1.436 sum -0.909 -4.722 -1.468 5.028 Atomic orbital electron populations 1.70147 1.05438 1.26324 1.45863 1.24885 0.94625 0.98702 0.94034 0.86819 0.80712 0.84600 0.77613 1.19887 1.21313 1.20867 1.21315 0.96763 0.91971 1.48923 0.92622 1.18738 0.90314 0.93002 0.87451 0.92017 1.19547 0.94590 0.90468 0.91758 1.20643 0.97433 1.01214 0.94989 1.20703 0.93239 1.02510 0.98730 1.20597 0.95789 1.04533 0.96752 1.20833 0.97774 1.02103 0.94807 1.20917 0.91895 0.98094 0.98265 1.65090 1.25170 1.28187 1.05769 1.23252 1.01070 0.95589 0.87203 1.22618 0.96344 0.98669 0.99576 1.22319 0.97828 0.99354 0.96332 1.22102 0.96186 0.93637 0.91907 0.92451 1.21762 0.97946 0.96614 0.88573 1.58859 1.53502 1.19077 1.06641 0.92809 0.88012 0.88706 0.88878 0.88783 0.86254 0.89959 0.90628 0.92891 0.92798 0.92512 0.92732 0.92626 0.96176 0.83000 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.21 8.39 55.43 0.46 -20.75 16 2 C 0.08 2.11 3.72 -17.82 -0.07 2.05 16 3 Si 0.87 20.34 29.57 -169.99 -5.03 15.31 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.55 -13.76 6.63 -34.44 -0.23 -13.99 16 8 H 0.06 1.46 7.78 -52.49 -0.41 1.06 16 9 C 0.21 4.77 1.64 -70.01 -0.12 4.66 16 10 H 0.06 1.43 6.00 -51.93 -0.31 1.12 16 11 C 0.04 0.85 3.11 -104.62 -0.33 0.53 16 12 C -0.12 -2.77 9.08 -39.58 -0.36 -3.13 16 13 C -0.13 -2.75 10.05 -39.59 -0.40 -3.15 16 14 C -0.16 -3.15 10.05 -39.58 -0.40 -3.55 16 15 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 16 C -0.07 -1.61 7.32 -39.59 -0.29 -1.90 16 17 N -0.52 -10.59 3.53 -217.19 -0.77 -11.35 16 18 C 0.06 1.19 4.20 -1.75 -0.01 1.18 16 19 C -0.13 -2.36 7.06 -24.87 -0.18 -2.54 16 20 C -0.12 -2.00 6.57 -25.38 -0.17 -2.17 16 21 C 0.07 1.34 2.64 -66.65 -0.18 1.16 16 22 H 0.06 1.23 7.21 -51.93 -0.37 0.85 16 23 C 0.08 1.35 6.31 -3.82 -0.02 1.32 16 24 N -0.85 -13.90 8.72 -10.37 -0.09 -13.99 16 25 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 26 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.12 2.63 5.00 -52.48 -0.26 2.37 16 31 H 0.08 2.01 4.96 -51.93 -0.26 1.75 16 32 H 0.08 1.71 5.64 -51.93 -0.29 1.42 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.80 7.69 -51.93 -0.40 0.41 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.35 6.35 6.59 -39.29 -0.26 6.09 16 40 H 0.32 4.41 9.08 -39.30 -0.36 4.05 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -25.00 301.16 -9.87 -34.87 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -5.86 Total: 14.09 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -3.13 Total: -22.71 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.39 Total: -46.09 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -25.00 -9.87 -34.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131859079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.090 kcal (2) G-P(sol) polarization free energy of solvation -24.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds