Wall clock time and date at job start Mon Mar 30 2020 06:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48502 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47360 * 300.00358 * 3 2 1 6 6 H 1.48495 * 109.46943 * 60.00907 * 3 2 1 7 7 C 1.37873 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00159 * 163.04124 * 7 2 1 9 9 C 1.50706 * 120.00168 * 343.03354 * 7 2 1 10 10 H 1.08998 * 109.47360 * 214.69717 * 9 7 2 11 11 C 1.50709 * 109.46783 * 334.69544 * 9 7 2 12 12 C 1.38236 * 119.99860 * 292.68793 * 11 9 7 13 13 C 1.38230 * 119.99534 * 179.78846 * 12 11 9 14 14 C 1.38235 * 120.00365 * 0.44444 * 13 12 11 15 15 C 1.38234 * 119.99755 * 359.80718 * 14 13 12 16 16 C 1.38230 * 119.99820 * 112.96394 * 11 9 7 17 17 N 1.46903 * 109.47070 * 94.69142 * 9 7 2 18 18 C 1.48808 * 111.18542 * 318.19661 * 17 9 7 19 19 C 1.54931 * 103.34960 * 159.50368 * 18 17 9 20 20 C 1.54599 * 102.92003 * 322.68880 * 19 18 17 21 21 C 1.47901 * 110.99808 * 75.53134 * 17 9 7 22 22 H 1.09001 * 109.91790 * 333.71201 * 21 17 9 23 23 C 1.52999 * 109.91455 * 94.80272 * 21 17 9 24 24 N 1.46905 * 109.47427 * 304.59668 * 23 21 17 25 25 H 0.97000 * 119.99910 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99798 * 0.02562 * 12 11 9 27 27 H 1.08000 * 119.99659 * 180.27627 * 13 12 11 28 28 H 1.07997 * 119.99916 * 179.83239 * 14 13 12 29 29 H 1.07996 * 119.99908 * 180.02562 * 15 14 13 30 30 H 1.08003 * 120.00087 * 359.97438 * 16 11 9 31 31 H 1.09002 * 110.51793 * 41.07112 * 18 17 9 32 32 H 1.08999 * 110.84098 * 278.09109 * 18 17 9 33 33 H 1.08996 * 110.72794 * 204.33310 * 19 18 17 34 34 H 1.08998 * 110.87751 * 81.11971 * 19 18 17 35 35 H 1.08999 * 110.31142 * 263.03920 * 20 19 18 36 36 H 1.09005 * 110.30307 * 140.87056 * 20 19 18 37 37 H 1.09003 * 109.46859 * 184.59945 * 23 21 17 38 38 H 1.08993 * 109.47307 * 64.60006 * 23 21 17 39 39 H 1.00899 * 110.99456 * 56.04142 * 24 23 21 40 40 H 1.00893 * 111.00439 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0493 -1.2142 -0.2733 9 6 1.3002 -2.4710 0.3797 10 1 1.9940 -3.1253 0.9075 11 6 0.1307 -2.1520 1.2752 12 6 0.3489 -1.6521 2.5454 13 6 -0.7240 -1.3555 3.3650 14 6 -2.0148 -1.5674 2.9179 15 6 -2.2328 -2.0722 1.6496 16 6 -1.1600 -2.3648 0.8284 17 7 0.8185 -3.1445 -0.8336 18 6 0.2349 -2.1694 -1.7943 19 6 0.2866 -2.9245 -3.1462 20 6 1.6229 -3.6972 -3.0597 21 6 1.9323 -3.7981 -1.5546 22 1 2.8690 -3.2867 -1.3329 23 6 2.0304 -5.2676 -1.1400 24 7 2.1631 -5.3567 0.3203 25 1 -0.4850 0.8401 0.0004 26 1 1.3574 -1.4897 2.8959 27 1 -0.5537 -0.9608 4.3557 28 1 -2.8528 -1.3382 3.5593 29 1 -3.2412 -2.2374 1.3002 30 1 -1.3303 -2.7592 -0.1626 31 1 0.8410 -1.2644 -1.8357 32 1 -0.7942 -1.9298 -1.5266 33 1 0.3004 -2.2224 -3.9799 34 1 -0.5524 -3.6140 -3.2384 35 1 2.4120 -3.1469 -3.5721 36 1 1.5130 -4.6922 -3.4909 37 1 2.9019 -5.7210 -1.6123 38 1 1.1304 -5.7951 -1.4559 39 1 1.3992 -4.8863 0.7821 40 1 2.2301 -6.3179 0.6194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131859079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:42 Heat of formation + Delta-G solvation = 35.190710 kcal Electronic energy + Delta-G solvation = -20929.097473 eV Core-core repulsion = 18129.405969 eV Total energy + Delta-G solvation = -2799.691504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58879 -38.92434 -35.59099 -34.65261 -32.87919 -31.33648 -30.42337 -29.51224 -27.91198 -25.30788 -24.01261 -22.92442 -21.84137 -21.12241 -20.57463 -18.38571 -17.33766 -16.83410 -16.65476 -16.36353 -15.84797 -15.42505 -15.12927 -14.78998 -14.58125 -14.10962 -13.93640 -13.76897 -13.45129 -13.23264 -13.08240 -12.75368 -12.70224 -12.33214 -12.17779 -12.09974 -11.78741 -11.57913 -11.36310 -11.23943 -11.11057 -10.78734 -10.27748 -9.42794 -9.28178 -9.02081 -8.74396 -7.82480 -6.13662 1.05484 1.14942 1.34466 1.41974 1.47703 2.44185 3.14564 3.51046 3.72567 3.80543 4.10398 4.30086 4.34198 4.45957 4.50477 4.60571 4.63887 4.66455 4.78654 4.90477 4.97768 5.07841 5.15063 5.20906 5.24463 5.29002 5.36086 5.54443 5.63721 5.67066 5.72325 5.80971 5.92329 6.04909 6.09393 6.25556 6.37908 6.43942 6.57224 6.70823 6.79498 6.94484 6.96201 7.51269 8.89781 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.010896 C = 0.008217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.314346 B = 2569.221353 C = 3406.908698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.063 3.937 3 Si 0.915 3.085 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.560 4.560 8 H 0.031 0.969 9 C 0.217 3.783 10 H 0.051 0.949 11 C 0.024 3.976 12 C -0.145 4.145 13 C -0.138 4.138 14 C -0.157 4.157 15 C -0.140 4.140 16 C -0.083 4.083 17 N -0.507 5.507 18 C 0.060 3.940 19 C -0.126 4.126 20 C -0.114 4.114 21 C 0.066 3.934 22 H 0.023 0.977 23 C 0.089 3.911 24 N -0.859 5.859 25 H 0.256 0.744 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.345 0.655 40 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -7.174 -1.509 7.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.600 4.600 8 H 0.050 0.950 9 C 0.111 3.889 10 H 0.069 0.931 11 C 0.023 3.977 12 C -0.164 4.164 13 C -0.156 4.156 14 C -0.175 4.175 15 C -0.159 4.159 16 C -0.101 4.101 17 N -0.231 5.231 18 C -0.068 4.068 19 C -0.164 4.164 20 C -0.152 4.152 21 C -0.043 4.043 22 H 0.041 0.959 23 C -0.042 4.042 24 N -0.391 5.391 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.159 0.841 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.125 -7.040 -1.433 7.492 hybrid contribution 0.474 1.674 -0.172 1.748 sum -1.651 -5.366 -1.605 5.839 Atomic orbital electron populations 1.70245 1.05618 1.25991 1.46029 1.25165 0.95131 0.99947 0.94107 0.86212 0.79553 0.82727 0.77237 1.20633 1.21209 1.21188 1.21333 0.95743 0.93566 1.49312 0.95035 1.18568 0.90280 0.91792 0.88282 0.93118 1.19563 0.94860 0.91349 0.91973 1.20742 0.97701 1.02409 0.95563 1.20997 0.93144 1.01928 0.99512 1.20957 0.96426 1.03270 0.96866 1.21149 0.98505 1.01293 0.94913 1.20911 0.92081 0.98713 0.98355 1.65052 1.25557 1.27308 1.05222 1.23045 0.99288 0.94939 0.89534 1.22558 0.97453 0.98813 0.97593 1.22303 0.97228 1.00888 0.94790 1.22208 0.93941 0.94771 0.93408 0.95885 1.21708 0.99208 0.94733 0.88576 1.58820 1.53083 1.20364 1.06799 0.93399 0.89073 0.86434 0.85750 0.86391 0.86852 0.93500 0.92283 0.91908 0.91259 0.92408 0.89796 0.90823 0.95146 0.84095 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.91 8.39 21.45 0.18 -42.73 16 2 C 0.06 3.19 3.72 84.65 0.31 3.50 16 3 Si 0.91 42.46 29.57 68.60 2.03 44.49 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.56 -28.98 6.63 25.60 0.17 -28.81 16 8 H 0.03 1.74 7.78 -2.91 -0.02 1.71 16 9 C 0.22 10.09 1.64 43.43 0.07 10.16 16 10 H 0.05 2.43 6.00 -2.39 -0.01 2.42 16 11 C 0.02 1.09 3.11 -19.86 -0.06 1.02 16 12 C -0.15 -6.51 9.08 22.27 0.20 -6.31 16 13 C -0.14 -5.46 10.05 22.27 0.22 -5.24 16 14 C -0.16 -5.85 10.05 22.27 0.22 -5.63 16 15 C -0.14 -5.47 10.05 22.27 0.22 -5.24 16 16 C -0.08 -3.57 7.32 22.27 0.16 -3.40 16 17 N -0.51 -20.86 3.53 -841.07 -2.97 -23.82 16 18 C 0.06 2.54 4.20 86.59 0.36 2.91 16 19 C -0.13 -4.25 7.06 31.80 0.22 -4.02 16 20 C -0.11 -3.59 6.57 31.47 0.21 -3.39 16 21 C 0.07 2.46 2.64 45.06 0.12 2.58 16 22 H 0.02 1.01 7.21 -2.39 -0.02 0.99 16 23 C 0.09 2.75 6.31 86.30 0.54 3.30 16 24 N -0.86 -27.45 8.72 -186.71 -1.63 -29.07 16 25 H 0.26 12.99 8.31 -92.71 -0.77 12.22 16 26 H 0.09 4.16 8.06 -2.91 -0.02 4.14 16 27 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 29 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.11 4.98 5.00 -2.91 -0.01 4.96 16 31 H 0.05 2.34 4.96 -2.39 -0.01 2.33 16 32 H 0.06 2.69 5.64 -2.39 -0.01 2.68 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 2.19 7.69 -2.38 -0.02 2.17 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.34 12.32 6.59 -89.69 -0.59 11.73 16 40 H 0.34 8.79 9.08 -89.70 -0.81 7.97 16 Total: -1.00 -53.75 301.16 0.24 -53.51 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.36 Total: 36.19 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 2.99 Total: -38.56 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -4.42 Total: -95.63 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -53.75 0.24 -53.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131859079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.700 kcal (2) G-P(sol) polarization free energy of solvation -53.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds