Wall clock time and date at job start Mon Mar 30 2020 06:36:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86803 * 119.99828 * 2 1
4 4 H 1.48502 * 109.46756 * 180.02562 * 3 2 1
5 5 H 1.48497 * 109.47360 * 300.00358 * 3 2 1
6 6 H 1.48495 * 109.46943 * 60.00907 * 3 2 1
7 7 C 1.37873 * 120.00077 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00159 * 163.04124 * 7 2 1
9 9 C 1.50706 * 120.00168 * 343.03354 * 7 2 1
10 10 H 1.08998 * 109.47360 * 214.69717 * 9 7 2
11 11 C 1.50709 * 109.46783 * 334.69544 * 9 7 2
12 12 C 1.38236 * 119.99860 * 292.68793 * 11 9 7
13 13 C 1.38230 * 119.99534 * 179.78846 * 12 11 9
14 14 C 1.38235 * 120.00365 * 0.44444 * 13 12 11
15 15 C 1.38234 * 119.99755 * 359.80718 * 14 13 12
16 16 C 1.38230 * 119.99820 * 112.96394 * 11 9 7
17 17 N 1.46903 * 109.47070 * 94.69142 * 9 7 2
18 18 C 1.48808 * 111.18542 * 318.19661 * 17 9 7
19 19 C 1.54931 * 103.34960 * 159.50368 * 18 17 9
20 20 C 1.54599 * 102.92003 * 322.68880 * 19 18 17
21 21 C 1.47901 * 110.99808 * 75.53134 * 17 9 7
22 22 H 1.09001 * 109.91790 * 333.71201 * 21 17 9
23 23 C 1.52999 * 109.91455 * 94.80272 * 21 17 9
24 24 N 1.46905 * 109.47427 * 304.59668 * 23 21 17
25 25 H 0.97000 * 119.99910 * 359.97438 * 1 2 3
26 26 H 1.07999 * 119.99798 * 0.02562 * 12 11 9
27 27 H 1.08000 * 119.99659 * 180.27627 * 13 12 11
28 28 H 1.07997 * 119.99916 * 179.83239 * 14 13 12
29 29 H 1.07996 * 119.99908 * 180.02562 * 15 14 13
30 30 H 1.08003 * 120.00087 * 359.97438 * 16 11 9
31 31 H 1.09002 * 110.51793 * 41.07112 * 18 17 9
32 32 H 1.08999 * 110.84098 * 278.09109 * 18 17 9
33 33 H 1.08996 * 110.72794 * 204.33310 * 19 18 17
34 34 H 1.08998 * 110.87751 * 81.11971 * 19 18 17
35 35 H 1.08999 * 110.31142 * 263.03920 * 20 19 18
36 36 H 1.09005 * 110.30307 * 140.87056 * 20 19 18
37 37 H 1.09003 * 109.46859 * 184.59945 * 23 21 17
38 38 H 1.08993 * 109.47307 * 64.60006 * 23 21 17
39 39 H 1.00899 * 110.99456 * 56.04142 * 24 23 21
40 40 H 1.00893 * 111.00439 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8905 2.3963 1.2126
7 6 2.0045 -1.1940 -0.0005
8 1 3.0493 -1.2142 -0.2733
9 6 1.3002 -2.4710 0.3797
10 1 1.9940 -3.1253 0.9075
11 6 0.1307 -2.1520 1.2752
12 6 0.3489 -1.6521 2.5454
13 6 -0.7240 -1.3555 3.3650
14 6 -2.0148 -1.5674 2.9179
15 6 -2.2328 -2.0722 1.6496
16 6 -1.1600 -2.3648 0.8284
17 7 0.8185 -3.1445 -0.8336
18 6 0.2349 -2.1694 -1.7943
19 6 0.2866 -2.9245 -3.1462
20 6 1.6229 -3.6972 -3.0597
21 6 1.9323 -3.7981 -1.5546
22 1 2.8690 -3.2867 -1.3329
23 6 2.0304 -5.2676 -1.1400
24 7 2.1631 -5.3567 0.3203
25 1 -0.4850 0.8401 0.0004
26 1 1.3574 -1.4897 2.8959
27 1 -0.5537 -0.9608 4.3557
28 1 -2.8528 -1.3382 3.5593
29 1 -3.2412 -2.2374 1.3002
30 1 -1.3303 -2.7592 -0.1626
31 1 0.8410 -1.2644 -1.8357
32 1 -0.7942 -1.9298 -1.5266
33 1 0.3004 -2.2224 -3.9799
34 1 -0.5524 -3.6140 -3.2384
35 1 2.4120 -3.1469 -3.5721
36 1 1.5130 -4.6922 -3.4909
37 1 2.9019 -5.7210 -1.6123
38 1 1.1304 -5.7951 -1.4559
39 1 1.3992 -4.8863 0.7821
40 1 2.2301 -6.3179 0.6194
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000131859079.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:36:42
Heat of formation + Delta-G solvation = 35.190710 kcal
Electronic energy + Delta-G solvation = -20929.097473 eV
Core-core repulsion = 18129.405969 eV
Total energy + Delta-G solvation = -2799.691504 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.58879 -38.92434 -35.59099 -34.65261 -32.87919 -31.33648 -30.42337 -29.51224
-27.91198 -25.30788 -24.01261 -22.92442 -21.84137 -21.12241 -20.57463 -18.38571
-17.33766 -16.83410 -16.65476 -16.36353 -15.84797 -15.42505 -15.12927 -14.78998
-14.58125 -14.10962 -13.93640 -13.76897 -13.45129 -13.23264 -13.08240 -12.75368
-12.70224 -12.33214 -12.17779 -12.09974 -11.78741 -11.57913 -11.36310 -11.23943
-11.11057 -10.78734 -10.27748 -9.42794 -9.28178 -9.02081 -8.74396 -7.82480
-6.13662 1.05484 1.14942 1.34466 1.41974 1.47703 2.44185 3.14564
3.51046 3.72567 3.80543 4.10398 4.30086 4.34198 4.45957 4.50477
4.60571 4.63887 4.66455 4.78654 4.90477 4.97768 5.07841 5.15063
5.20906 5.24463 5.29002 5.36086 5.54443 5.63721 5.67066 5.72325
5.80971 5.92329 6.04909 6.09393 6.25556 6.37908 6.43942 6.57224
6.70823 6.79498 6.94484 6.96201 7.51269 8.89781
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.015278 B = 0.010896 C = 0.008217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1832.314346 B = 2569.221353 C = 3406.908698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.844 5.844
2 C 0.063 3.937
3 Si 0.915 3.085
4 H -0.281 1.281
5 H -0.286 1.286
6 H -0.286 1.286
7 C -0.560 4.560
8 H 0.031 0.969
9 C 0.217 3.783
10 H 0.051 0.949
11 C 0.024 3.976
12 C -0.145 4.145
13 C -0.138 4.138
14 C -0.157 4.157
15 C -0.140 4.140
16 C -0.083 4.083
17 N -0.507 5.507
18 C 0.060 3.940
19 C -0.126 4.126
20 C -0.114 4.114
21 C 0.066 3.934
22 H 0.023 0.977
23 C 0.089 3.911
24 N -0.859 5.859
25 H 0.256 0.744
26 H 0.091 0.909
27 H 0.118 0.882
28 H 0.125 0.875
29 H 0.118 0.882
30 H 0.114 0.886
31 H 0.047 0.953
32 H 0.059 0.941
33 H 0.062 0.938
34 H 0.069 0.931
35 H 0.057 0.943
36 H 0.083 0.917
37 H 0.073 0.927
38 H 0.030 0.970
39 H 0.345 0.655
40 H 0.341 0.659
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.247 -7.174 -1.509 7.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.479 5.479
2 C -0.143 4.143
3 Si 0.743 3.257
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.212 1.212
7 C -0.600 4.600
8 H 0.050 0.950
9 C 0.111 3.889
10 H 0.069 0.931
11 C 0.023 3.977
12 C -0.164 4.164
13 C -0.156 4.156
14 C -0.175 4.175
15 C -0.159 4.159
16 C -0.101 4.101
17 N -0.231 5.231
18 C -0.068 4.068
19 C -0.164 4.164
20 C -0.152 4.152
21 C -0.043 4.043
22 H 0.041 0.959
23 C -0.042 4.042
24 N -0.391 5.391
25 H 0.066 0.934
26 H 0.109 0.891
27 H 0.136 0.864
28 H 0.142 0.858
29 H 0.136 0.864
30 H 0.131 0.869
31 H 0.065 0.935
32 H 0.077 0.923
33 H 0.081 0.919
34 H 0.087 0.913
35 H 0.076 0.924
36 H 0.102 0.898
37 H 0.092 0.908
38 H 0.049 0.951
39 H 0.159 0.841
40 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -2.125 -7.040 -1.433 7.492
hybrid contribution 0.474 1.674 -0.172 1.748
sum -1.651 -5.366 -1.605 5.839
Atomic orbital electron populations
1.70245 1.05618 1.25991 1.46029 1.25165 0.95131 0.99947 0.94107
0.86212 0.79553 0.82727 0.77237 1.20633 1.21209 1.21188 1.21333
0.95743 0.93566 1.49312 0.95035 1.18568 0.90280 0.91792 0.88282
0.93118 1.19563 0.94860 0.91349 0.91973 1.20742 0.97701 1.02409
0.95563 1.20997 0.93144 1.01928 0.99512 1.20957 0.96426 1.03270
0.96866 1.21149 0.98505 1.01293 0.94913 1.20911 0.92081 0.98713
0.98355 1.65052 1.25557 1.27308 1.05222 1.23045 0.99288 0.94939
0.89534 1.22558 0.97453 0.98813 0.97593 1.22303 0.97228 1.00888
0.94790 1.22208 0.93941 0.94771 0.93408 0.95885 1.21708 0.99208
0.94733 0.88576 1.58820 1.53083 1.20364 1.06799 0.93399 0.89073
0.86434 0.85750 0.86391 0.86852 0.93500 0.92283 0.91908 0.91259
0.92408 0.89796 0.90823 0.95146 0.84095 0.84607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -42.91 8.39 21.45 0.18 -42.73 16
2 C 0.06 3.19 3.72 84.65 0.31 3.50 16
3 Si 0.91 42.46 29.57 68.60 2.03 44.49 16
4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16
6 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16
7 C -0.56 -28.98 6.63 25.60 0.17 -28.81 16
8 H 0.03 1.74 7.78 -2.91 -0.02 1.71 16
9 C 0.22 10.09 1.64 43.43 0.07 10.16 16
10 H 0.05 2.43 6.00 -2.39 -0.01 2.42 16
11 C 0.02 1.09 3.11 -19.86 -0.06 1.02 16
12 C -0.15 -6.51 9.08 22.27 0.20 -6.31 16
13 C -0.14 -5.46 10.05 22.27 0.22 -5.24 16
14 C -0.16 -5.85 10.05 22.27 0.22 -5.63 16
15 C -0.14 -5.47 10.05 22.27 0.22 -5.24 16
16 C -0.08 -3.57 7.32 22.27 0.16 -3.40 16
17 N -0.51 -20.86 3.53 -841.07 -2.97 -23.82 16
18 C 0.06 2.54 4.20 86.59 0.36 2.91 16
19 C -0.13 -4.25 7.06 31.80 0.22 -4.02 16
20 C -0.11 -3.59 6.57 31.47 0.21 -3.39 16
21 C 0.07 2.46 2.64 45.06 0.12 2.58 16
22 H 0.02 1.01 7.21 -2.39 -0.02 0.99 16
23 C 0.09 2.75 6.31 86.30 0.54 3.30 16
24 N -0.86 -27.45 8.72 -186.71 -1.63 -29.07 16
25 H 0.26 12.99 8.31 -92.71 -0.77 12.22 16
26 H 0.09 4.16 8.06 -2.91 -0.02 4.14 16
27 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16
28 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16
29 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16
30 H 0.11 4.98 5.00 -2.91 -0.01 4.96 16
31 H 0.05 2.34 4.96 -2.39 -0.01 2.33 16
32 H 0.06 2.69 5.64 -2.39 -0.01 2.68 16
33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16
34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16
35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
36 H 0.08 2.19 7.69 -2.38 -0.02 2.17 16
37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
38 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16
39 H 0.34 12.32 6.59 -89.69 -0.59 11.73 16
40 H 0.34 8.79 9.08 -89.70 -0.81 7.97 16
Total: -1.00 -53.75 301.16 0.24 -53.51
By element:
Atomic # 1 Polarization: 36.55 SS G_CDS: -0.36 Total: 36.19 kcal
Atomic # 6 Polarization: -41.55 SS G_CDS: 2.99 Total: -38.56 kcal
Atomic # 7 Polarization: -91.21 SS G_CDS: -4.42 Total: -95.63 kcal
Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal
Total: -53.75 0.24 -53.51 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000131859079.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.700 kcal
(2) G-P(sol) polarization free energy of solvation -53.753 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.509 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.191 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds