Wall clock time and date at job start Mon Mar 30 2020 07:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47302 * 2 1 4 4 H 1.09001 * 109.46643 * 305.79156 * 3 2 1 5 5 C 1.50702 * 109.47149 * 185.79172 * 3 2 1 6 6 H 1.07999 * 120.00041 * 242.46337 * 5 3 2 7 7 C 1.37882 * 119.99874 * 62.46196 * 5 3 2 8 8 N 1.31515 * 119.99748 * 194.41964 * 7 5 3 9 9 Si 1.86801 * 120.00135 * 14.41535 * 7 5 3 10 10 H 1.48505 * 109.46719 * 94.96811 * 9 7 5 11 11 H 1.48492 * 109.47018 * 214.96566 * 9 7 5 12 12 H 1.48495 * 109.47135 * 334.96759 * 9 7 5 13 13 N 1.46897 * 109.47165 * 65.79181 * 3 2 1 14 14 C 1.46902 * 111.00039 * 201.16016 * 13 3 2 15 15 H 1.09006 * 110.34403 * 330.65923 * 14 13 3 16 16 C 1.54340 * 110.30584 * 208.53131 * 14 13 3 17 17 C 1.54341 * 102.57261 * 214.82615 * 16 14 13 18 18 H 1.08995 * 110.30429 * 267.31617 * 17 16 14 19 19 N 1.46902 * 110.30030 * 145.26277 * 17 16 14 20 20 C 1.51368 * 105.17144 * 26.24456 * 17 16 14 21 21 C 1.38497 * 130.39453 * 162.84310 * 20 17 16 22 22 C 1.38104 * 120.21500 * 179.97438 * 21 20 17 23 23 C 1.38250 * 119.93760 * 359.97438 * 22 21 20 24 24 C 1.38106 * 119.92957 * 0.02562 * 23 22 21 25 25 C 1.38210 * 109.75599 * 342.81734 * 20 17 16 26 26 H 1.08995 * 109.47536 * 184.16761 * 1 2 3 27 27 H 1.09003 * 109.47083 * 304.17078 * 1 2 3 28 28 H 1.08998 * 109.47114 * 64.16814 * 1 2 3 29 29 H 1.09000 * 109.47080 * 240.00041 * 2 1 3 30 30 H 1.09001 * 109.47098 * 119.99954 * 2 1 3 31 31 H 0.96998 * 119.99734 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00117 * 325.10858 * 13 3 2 33 33 H 1.09000 * 110.82168 * 96.49962 * 16 14 13 34 34 H 1.09007 * 110.82014 * 333.15335 * 16 14 13 35 35 H 1.00898 * 110.99962 * 179.97438 * 19 17 16 36 36 H 1.00899 * 111.00007 * 303.95442 * 19 17 16 37 37 H 1.08005 * 119.89171 * 359.96158 * 21 20 17 38 38 H 1.08002 * 120.03309 * 180.02562 * 22 21 20 39 39 H 1.07995 * 120.03225 * 180.02562 * 23 22 21 40 40 H 1.08007 * 119.89033 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5944 1.9853 -0.8336 5 6 3.5402 1.4449 -0.1434 6 1 4.1573 1.8500 0.6449 7 6 4.1248 0.9298 -1.2810 8 7 5.4136 0.6683 -1.2972 9 14 3.0863 0.6033 -2.7990 10 1 3.1661 1.7705 -3.7137 11 1 3.5935 -0.6064 -3.4948 12 1 1.6738 0.3865 -2.3952 13 7 1.6678 2.0935 1.2632 14 6 1.6755 3.5559 1.1240 15 1 2.4028 3.8611 0.3716 16 6 1.9957 4.2212 2.4794 17 6 1.1380 5.5036 2.4350 18 1 1.7203 6.3344 2.0366 19 7 0.6389 5.8296 3.7776 20 6 -0.0141 5.1778 1.5089 21 6 -1.2354 5.8086 1.3395 22 6 -2.1453 5.3257 0.4196 23 6 -1.8368 4.2094 -0.3354 24 6 -0.6195 3.5791 -0.1678 25 6 0.2941 4.0616 0.7545 26 1 -0.3634 -1.0249 0.0747 27 1 -0.3633 0.5772 0.8503 28 1 -0.3633 0.4478 -0.9250 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8248 0.3057 -2.0973 32 1 0.7704 1.7660 1.5881 33 1 3.0555 4.4660 2.5501 34 1 1.6918 3.5802 3.3070 35 1 0.0767 6.6673 3.7609 36 1 0.1236 5.0557 4.1696 37 1 -1.4771 6.6808 1.9288 38 1 -3.0967 5.8201 0.2896 39 1 -2.5471 3.8307 -1.0554 40 1 -0.3793 2.7068 -0.7577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132090671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:38 Heat of formation + Delta-G solvation = 26.947610 kcal Electronic energy + Delta-G solvation = -20042.503352 eV Core-core repulsion = 17242.454401 eV Total energy + Delta-G solvation = -2800.048951 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23701 -36.70043 -35.78036 -33.07373 -31.94037 -30.24429 -30.09150 -28.40349 -26.97132 -24.21933 -22.55191 -22.45009 -20.66400 -20.13191 -19.64571 -16.99735 -16.50672 -15.88454 -15.32612 -15.12860 -14.90609 -14.38591 -13.97770 -13.76944 -13.54491 -12.88594 -12.88288 -12.51212 -12.41245 -12.20694 -11.87217 -11.55534 -11.33068 -11.23168 -11.06344 -10.83518 -10.63860 -10.35722 -10.19486 -9.95868 -9.45313 -9.18822 -8.93084 -8.69746 -8.49748 -8.43476 -7.37679 -6.07025 -3.99834 1.43073 1.48261 3.25553 3.35178 3.37714 3.84729 4.41720 4.45847 4.63049 4.85660 5.03533 5.07845 5.11163 5.24499 5.44185 5.50126 5.57782 5.61197 5.79098 5.85197 5.89070 5.98324 6.02592 6.15417 6.22868 6.39112 6.50617 6.53336 6.56555 6.58829 6.65088 6.75100 6.79554 6.95477 7.09375 7.12900 7.24283 7.41252 7.76058 7.97304 8.22613 8.74943 9.08962 9.59272 11.06273 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021813 B = 0.006927 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.308257 B = 4041.161698 C = 4610.074357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.129 4.129 3 C 0.193 3.807 4 H -0.005 1.005 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.252 1.252 13 N -0.661 5.661 14 C 0.128 3.872 15 H 0.102 0.898 16 C -0.094 4.094 17 C 0.129 3.871 18 H 0.093 0.907 19 N -0.835 5.835 20 C -0.136 4.136 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.105 4.105 25 C -0.105 4.105 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.262 0.738 32 H 0.322 0.678 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.336 0.664 36 H 0.341 0.659 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.561 8.002 4.558 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.167 4.167 3 C 0.085 3.915 4 H 0.013 0.987 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.683 3.317 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.176 1.176 13 N -0.290 5.290 14 C 0.017 3.983 15 H 0.120 0.880 16 C -0.132 4.132 17 C 0.017 3.983 18 H 0.111 0.889 19 N -0.363 5.363 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.124 4.124 25 C -0.107 4.107 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.951 7.943 4.931 15.973 hybrid contribution -2.341 -0.218 -2.140 3.180 sum -15.292 7.725 2.791 17.359 Atomic orbital electron populations 1.21943 0.98665 1.00372 1.00350 1.22124 0.92409 1.00108 1.02079 1.19565 0.96678 0.89543 0.85749 0.98721 1.20981 0.89121 1.39931 1.04033 0.90193 1.24906 0.94684 0.94875 0.98469 1.69966 1.10954 1.43684 1.28508 0.87349 0.82298 0.77870 0.84150 1.21000 1.21362 1.17618 1.60642 1.33532 1.02269 1.32596 1.21259 0.90710 0.89424 0.96884 0.87970 1.22358 0.99924 0.93477 0.97490 1.21098 0.92163 0.99066 0.85972 0.88896 1.58969 1.46586 1.08961 1.21742 1.21577 0.95988 0.96688 0.99651 1.20491 0.93459 0.99666 0.99158 1.20939 0.99261 0.97270 0.97158 1.21034 0.96767 0.96280 0.99745 1.20861 0.93400 1.00269 0.97842 1.21775 0.97907 0.95915 0.95127 0.93723 0.93411 0.93871 0.92112 0.91764 0.92804 0.86003 0.89966 0.90233 0.85222 0.84593 0.87018 0.86405 0.86300 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.60 37.15 0.36 -2.29 16 2 C -0.13 -2.70 4.73 -26.73 -0.13 -2.83 16 3 C 0.19 4.34 1.39 -68.86 -0.10 4.25 16 4 H 0.00 -0.11 5.53 -51.93 -0.29 -0.40 16 5 C -0.50 -13.77 8.81 -34.44 -0.30 -14.07 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 7 C 0.07 2.05 5.34 -17.82 -0.10 1.95 16 8 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.86 20.84 25.70 -169.99 -4.37 16.48 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.25 -5.69 5.35 56.52 0.30 -5.39 16 13 N -0.66 -12.98 6.08 -100.92 -0.61 -13.59 16 14 C 0.13 2.29 2.98 -67.68 -0.20 2.09 16 15 H 0.10 2.10 7.52 -51.93 -0.39 1.71 16 16 C -0.09 -1.45 6.43 -25.33 -0.16 -1.61 16 17 C 0.13 1.69 4.00 -67.83 -0.27 1.42 16 18 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 19 N -0.84 -9.26 9.28 -4.77 -0.04 -9.30 16 20 C -0.14 -1.89 5.77 -104.21 -0.60 -2.49 16 21 C -0.11 -1.33 9.96 -39.54 -0.39 -1.73 16 22 C -0.13 -1.54 10.05 -39.63 -0.40 -1.93 16 23 C -0.12 -1.59 10.05 -39.63 -0.40 -1.99 16 24 C -0.11 -1.65 9.89 -39.53 -0.39 -2.04 16 25 C -0.10 -1.68 5.49 -104.06 -0.57 -2.25 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.75 6.33 -51.93 -0.33 0.42 16 28 H 0.04 0.72 7.67 -51.93 -0.40 0.32 16 29 H 0.06 1.36 4.61 -51.93 -0.24 1.12 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.32 5.80 6.17 -39.29 -0.24 5.56 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 35 H 0.34 3.09 9.03 -39.29 -0.35 2.74 16 36 H 0.34 3.66 8.88 -39.29 -0.35 3.31 16 37 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.12 2.01 6.25 -52.48 -0.33 1.68 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -29.39 312.09 -9.15 -38.54 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -5.95 Total: 12.96 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -3.65 Total: -23.53 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.12 Total: -49.14 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.37 Total: 16.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.39 -9.15 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132090671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.485 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds