Wall clock time and date at job start Mon Mar 30 2020 07:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47302 * 2 1 4 4 H 1.09001 * 109.46643 * 305.79156 * 3 2 1 5 5 C 1.50702 * 109.47149 * 185.79172 * 3 2 1 6 6 H 1.07999 * 120.00041 * 242.46337 * 5 3 2 7 7 C 1.37882 * 119.99874 * 62.46196 * 5 3 2 8 8 N 1.31515 * 119.99748 * 194.41964 * 7 5 3 9 9 Si 1.86801 * 120.00135 * 14.41535 * 7 5 3 10 10 H 1.48505 * 109.46719 * 94.96811 * 9 7 5 11 11 H 1.48492 * 109.47018 * 214.96566 * 9 7 5 12 12 H 1.48495 * 109.47135 * 334.96759 * 9 7 5 13 13 N 1.46897 * 109.47165 * 65.79181 * 3 2 1 14 14 C 1.46902 * 111.00039 * 201.16016 * 13 3 2 15 15 H 1.09006 * 110.34403 * 330.65923 * 14 13 3 16 16 C 1.54340 * 110.30584 * 208.53131 * 14 13 3 17 17 C 1.54341 * 102.57261 * 214.82615 * 16 14 13 18 18 H 1.08995 * 110.30429 * 267.31617 * 17 16 14 19 19 N 1.46902 * 110.30030 * 145.26277 * 17 16 14 20 20 C 1.51368 * 105.17144 * 26.24456 * 17 16 14 21 21 C 1.38497 * 130.39453 * 162.84310 * 20 17 16 22 22 C 1.38104 * 120.21500 * 179.97438 * 21 20 17 23 23 C 1.38250 * 119.93760 * 359.97438 * 22 21 20 24 24 C 1.38106 * 119.92957 * 0.02562 * 23 22 21 25 25 C 1.38210 * 109.75599 * 342.81734 * 20 17 16 26 26 H 1.08995 * 109.47536 * 184.16761 * 1 2 3 27 27 H 1.09003 * 109.47083 * 304.17078 * 1 2 3 28 28 H 1.08998 * 109.47114 * 64.16814 * 1 2 3 29 29 H 1.09000 * 109.47080 * 240.00041 * 2 1 3 30 30 H 1.09001 * 109.47098 * 119.99954 * 2 1 3 31 31 H 0.96998 * 119.99734 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00117 * 325.10858 * 13 3 2 33 33 H 1.09000 * 110.82168 * 96.49962 * 16 14 13 34 34 H 1.09007 * 110.82014 * 333.15335 * 16 14 13 35 35 H 1.00898 * 110.99962 * 179.97438 * 19 17 16 36 36 H 1.00899 * 111.00007 * 303.95442 * 19 17 16 37 37 H 1.08005 * 119.89171 * 359.96158 * 21 20 17 38 38 H 1.08002 * 120.03309 * 180.02562 * 22 21 20 39 39 H 1.07995 * 120.03225 * 180.02562 * 23 22 21 40 40 H 1.08007 * 119.89033 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5944 1.9853 -0.8336 5 6 3.5402 1.4449 -0.1434 6 1 4.1573 1.8500 0.6449 7 6 4.1248 0.9298 -1.2810 8 7 5.4136 0.6683 -1.2972 9 14 3.0863 0.6033 -2.7990 10 1 3.1661 1.7705 -3.7137 11 1 3.5935 -0.6064 -3.4948 12 1 1.6738 0.3865 -2.3952 13 7 1.6678 2.0935 1.2632 14 6 1.6755 3.5559 1.1240 15 1 2.4028 3.8611 0.3716 16 6 1.9957 4.2212 2.4794 17 6 1.1380 5.5036 2.4350 18 1 1.7203 6.3344 2.0366 19 7 0.6389 5.8296 3.7776 20 6 -0.0141 5.1778 1.5089 21 6 -1.2354 5.8086 1.3395 22 6 -2.1453 5.3257 0.4196 23 6 -1.8368 4.2094 -0.3354 24 6 -0.6195 3.5791 -0.1678 25 6 0.2941 4.0616 0.7545 26 1 -0.3634 -1.0249 0.0747 27 1 -0.3633 0.5772 0.8503 28 1 -0.3633 0.4478 -0.9250 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8248 0.3057 -2.0973 32 1 0.7704 1.7660 1.5881 33 1 3.0555 4.4660 2.5501 34 1 1.6918 3.5802 3.3070 35 1 0.0767 6.6673 3.7609 36 1 0.1236 5.0557 4.1696 37 1 -1.4771 6.6808 1.9288 38 1 -3.0967 5.8201 0.2896 39 1 -2.5471 3.8307 -1.0554 40 1 -0.3793 2.7068 -0.7577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132090671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:37 Heat of formation + Delta-G solvation = 5.932212 kcal Electronic energy + Delta-G solvation = -20043.414648 eV Core-core repulsion = 17242.454401 eV Total energy + Delta-G solvation = -2800.960248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38660 -38.20974 -36.96857 -34.64214 -33.79664 -31.40821 -31.24766 -29.63804 -28.78168 -25.54592 -24.19357 -23.58897 -21.84854 -21.57670 -21.14933 -18.87367 -17.83327 -17.16927 -16.69268 -16.25838 -16.23340 -15.94558 -15.33301 -15.19001 -14.76909 -14.56413 -14.14657 -13.96876 -13.71582 -13.58185 -13.49536 -12.96292 -12.67831 -12.58453 -12.40100 -12.32543 -12.16149 -11.97334 -11.77610 -11.56820 -11.25871 -11.10301 -10.65781 -9.90512 -9.77544 -9.48210 -8.97472 -8.28578 -6.25473 0.39568 0.43166 1.29174 1.33698 1.42439 2.33354 2.80126 3.04005 3.36503 3.43788 3.70525 3.90287 4.09535 4.13468 4.25582 4.30212 4.31515 4.37052 4.39768 4.50717 4.60839 4.73083 4.78001 4.86862 5.02477 5.05687 5.11750 5.13986 5.19509 5.22364 5.32708 5.46879 5.52829 5.58611 5.69078 5.78983 6.07694 6.10904 6.20169 6.48755 6.62352 6.79994 6.94806 7.37625 8.88847 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021813 B = 0.006927 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.308257 B = 4041.161698 C = 4610.074357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.203 3.797 4 H -0.008 1.008 5 C -0.504 4.504 6 H 0.031 0.969 7 C 0.015 3.985 8 N -0.945 5.945 9 Si 0.921 3.079 10 H -0.284 1.284 11 H -0.285 1.285 12 H -0.222 1.222 13 N -0.668 5.668 14 C 0.128 3.872 15 H 0.061 0.939 16 C -0.091 4.091 17 C 0.141 3.859 18 H 0.094 0.906 19 N -0.832 5.832 20 C -0.136 4.136 21 C -0.105 4.105 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.129 4.129 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.263 0.737 32 H 0.333 0.667 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.351 0.649 36 H 0.346 0.654 37 H 0.143 0.857 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.696 9.111 4.553 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.094 3.906 4 H 0.009 0.991 5 C -0.543 4.543 6 H 0.049 0.951 7 C -0.182 4.182 8 N -0.585 5.585 9 Si 0.746 3.254 10 H -0.211 1.211 11 H -0.211 1.211 12 H -0.144 1.144 13 N -0.298 5.298 14 C 0.017 3.983 15 H 0.079 0.921 16 C -0.129 4.129 17 C 0.028 3.972 18 H 0.111 0.889 19 N -0.361 5.361 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.132 4.132 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.159 0.841 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.125 9.070 4.953 20.002 hybrid contribution -1.021 -0.478 -2.034 2.325 sum -18.146 8.593 2.919 20.289 Atomic orbital electron populations 1.21834 0.94933 1.02256 1.01236 1.22008 0.95706 0.98086 1.00962 1.19302 0.93242 0.91084 0.86968 0.99056 1.21248 0.91721 1.38697 1.02630 0.95114 1.25734 0.95834 0.94922 1.01760 1.70117 1.13171 1.45713 1.29532 0.86293 0.82122 0.77481 0.79538 1.21098 1.21147 1.14442 1.60505 1.34474 1.03613 1.31255 1.21114 0.91655 0.88396 0.97142 0.92131 1.22253 0.99702 0.94846 0.96118 1.20848 0.91767 0.97448 0.87106 0.88858 1.58887 1.47260 1.09824 1.20119 1.21649 0.96879 0.96116 0.99218 1.20854 0.92291 1.00107 0.99108 1.21380 1.00337 0.96308 0.95696 1.21319 0.95997 0.96433 1.00179 1.20881 0.94673 1.00600 0.98111 1.21524 0.96895 0.97645 0.97118 0.91352 0.92213 0.93293 0.93475 0.92756 0.92772 0.84681 0.91474 0.90204 0.83493 0.84082 0.83907 0.82927 0.84064 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 9.60 71.98 0.69 -3.87 16 2 C -0.13 -5.36 4.73 30.59 0.14 -5.21 16 3 C 0.20 9.36 1.39 44.17 0.06 9.42 16 4 H -0.01 -0.37 5.53 -2.39 -0.01 -0.39 16 5 C -0.50 -29.21 8.81 25.60 0.23 -28.98 16 6 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 7 C 0.01 0.87 5.34 84.66 0.45 1.32 16 8 N -0.94 -60.01 13.96 21.45 0.30 -59.71 16 9 Si 0.92 43.95 25.70 68.60 1.76 45.72 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.22 -9.41 5.35 99.48 0.53 -8.88 16 13 N -0.67 -27.02 6.08 -473.20 -2.88 -29.89 16 14 C 0.13 4.75 2.98 44.93 0.13 4.89 16 15 H 0.06 2.70 7.52 -2.38 -0.02 2.69 16 16 C -0.09 -2.88 6.43 31.50 0.20 -2.68 16 17 C 0.14 3.53 4.00 44.84 0.18 3.71 16 18 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 19 N -0.83 -16.52 9.28 -169.01 -1.57 -18.09 16 20 C -0.14 -3.49 5.77 -19.60 -0.11 -3.61 16 21 C -0.11 -2.14 9.96 22.30 0.22 -1.91 16 22 C -0.12 -2.30 10.05 22.24 0.22 -2.08 16 23 C -0.12 -2.79 10.05 22.24 0.22 -2.57 16 24 C -0.12 -3.70 9.89 22.30 0.22 -3.48 16 25 C -0.13 -4.08 5.49 -19.50 -0.11 -4.19 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.73 6.33 -2.39 -0.02 1.71 16 28 H 0.05 1.49 7.67 -2.39 -0.02 1.47 16 29 H 0.05 2.06 4.61 -2.39 -0.01 2.05 16 30 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.33 11.98 6.17 -89.69 -0.55 11.42 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.08 2.50 7.93 -2.38 -0.02 2.48 16 35 H 0.35 5.28 9.03 -89.70 -0.81 4.47 16 36 H 0.35 6.57 8.88 -89.70 -0.80 5.77 16 37 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 38 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.11 3.39 6.25 -2.91 -0.02 3.37 16 Total: -1.00 -67.69 312.09 -0.89 -68.58 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -1.27 Total: 32.61 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 2.76 Total: -39.23 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -4.15 Total: -107.69 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.76 Total: 45.72 kcal Total: -67.69 -0.89 -68.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132090671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.516 kcal (2) G-P(sol) polarization free energy of solvation -67.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds