Wall clock time and date at job start Mon Mar 30 2020 07:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46872 * 2 1 4 4 H 1.08998 * 109.47158 * 305.63566 * 3 2 1 5 5 C 1.50704 * 109.46645 * 185.63644 * 3 2 1 6 6 H 1.08004 * 120.00152 * 239.99722 * 5 3 2 7 7 C 1.37873 * 119.99824 * 60.00657 * 5 3 2 8 8 N 1.31507 * 120.00535 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99877 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47322 * 119.99459 * 9 7 5 12 12 H 1.48500 * 109.47164 * 239.99531 * 9 7 5 13 13 N 1.46903 * 109.47185 * 65.63934 * 3 2 1 14 14 C 1.46893 * 110.99656 * 252.04555 * 13 3 2 15 15 H 1.08999 * 110.27495 * 35.22507 * 14 13 3 16 16 C 1.54494 * 110.30485 * 157.34655 * 14 13 3 17 17 C 1.54347 * 102.32424 * 92.71752 * 16 14 13 18 18 H 1.09001 * 110.30796 * 267.26312 * 17 16 14 19 19 N 1.46906 * 110.30264 * 145.21019 * 17 16 14 20 20 C 1.51366 * 105.25784 * 26.23930 * 17 16 14 21 21 C 1.38500 * 130.39577 * 162.85980 * 20 17 16 22 22 C 1.38099 * 120.21465 * 180.02562 * 21 20 17 23 23 C 1.38256 * 119.93949 * 359.97438 * 22 21 20 24 24 C 1.38100 * 119.93108 * 359.97438 * 23 22 21 25 25 C 1.38223 * 109.75377 * 342.85859 * 20 17 16 26 26 H 1.09003 * 109.47057 * 295.23986 * 1 2 3 27 27 H 1.08994 * 109.46787 * 55.24417 * 1 2 3 28 28 H 1.09000 * 109.47155 * 175.24588 * 1 2 3 29 29 H 1.08997 * 109.47253 * 239.99828 * 2 1 3 30 30 H 1.09007 * 109.47016 * 119.99864 * 2 1 3 31 31 H 0.96996 * 120.00920 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00179 * 15.99995 * 13 3 2 33 33 H 1.08998 * 110.90737 * 334.49582 * 16 14 13 34 34 H 1.08998 * 110.79969 * 210.89511 * 16 14 13 35 35 H 1.00897 * 111.00284 * 181.37664 * 19 17 16 36 36 H 1.00896 * 110.99602 * 305.32594 * 19 17 16 37 37 H 1.07999 * 119.88895 * 0.02562 * 21 20 17 38 38 H 1.08004 * 120.03394 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.03496 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.89203 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1396 6 1 4.1540 1.8865 0.6318 7 6 4.1302 0.8830 -1.2521 8 7 3.3834 0.3449 -2.1912 9 14 5.9902 0.8864 -1.4254 10 1 6.5964 1.5480 -0.2421 11 1 6.4814 -0.5119 -1.5169 12 1 6.3714 1.6265 -2.6551 13 7 1.6646 2.0946 1.2617 14 6 0.5972 3.0808 1.0472 15 1 -0.0867 2.7346 0.2723 16 6 -0.1689 3.3366 2.3643 17 6 0.5834 4.5490 2.9528 18 1 1.3717 4.2142 3.6270 19 7 -0.3509 5.4335 3.6619 20 6 1.1811 5.2642 1.7602 21 6 1.6787 6.5514 1.6422 22 6 2.1817 6.9941 0.4347 23 6 2.1896 6.1503 -0.6605 24 6 1.6949 4.8662 -0.5446 25 6 1.1890 4.4206 0.6653 26 1 -0.3633 0.4382 0.9296 27 1 -0.3633 0.5858 -0.8443 28 1 -0.3633 -1.0241 -0.0852 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.7982 -0.0507 -2.9737 32 1 1.3932 1.4129 1.9543 33 1 -0.0972 2.4760 3.0294 34 1 -1.2106 3.5870 2.1637 35 1 0.1264 6.2417 4.0320 36 1 -1.1147 5.7078 3.0623 37 1 1.6732 7.2109 2.4974 38 1 2.5686 7.9985 0.3460 39 1 2.5830 6.4948 -1.6054 40 1 1.7010 4.2078 -1.4007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132091061.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:41 Heat of formation + Delta-G solvation = 21.780648 kcal Electronic energy + Delta-G solvation = -20021.108767 eV Core-core repulsion = 17220.835760 eV Total energy + Delta-G solvation = -2800.273008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.00566 -36.63245 -35.45348 -32.96519 -31.57971 -29.98882 -29.70854 -28.37847 -26.33877 -24.29388 -22.64869 -22.33774 -20.42148 -19.97931 -19.60077 -16.41382 -16.23795 -15.63769 -15.26812 -14.88951 -14.69552 -14.46186 -13.67488 -13.50779 -13.25836 -12.98374 -12.67993 -12.45143 -12.22181 -11.63603 -11.56745 -11.41100 -11.16290 -10.96628 -10.87354 -10.78917 -10.53135 -10.46763 -9.99326 -9.73504 -9.71615 -9.03194 -8.78943 -8.38311 -8.31339 -8.17211 -7.21962 -5.95366 -3.97518 1.74573 1.81834 3.32299 3.40452 3.46671 4.14529 4.47252 4.56785 4.77806 4.99721 5.24012 5.31510 5.34941 5.36960 5.42580 5.54857 5.77235 5.90765 6.04994 6.08449 6.10762 6.13382 6.15965 6.26292 6.36946 6.40730 6.55071 6.77236 6.79757 6.90712 6.96484 7.04711 7.18043 7.25300 7.36224 7.42075 7.46725 7.76163 7.94201 8.30949 8.54783 8.63533 9.10975 9.67291 11.10444 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018497 B = 0.007368 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.363098 B = 3799.133201 C = 4726.462354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.220 3.780 4 H 0.027 0.973 5 C -0.483 4.483 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.670 5.670 14 C 0.122 3.878 15 H 0.046 0.954 16 C -0.111 4.111 17 C 0.139 3.861 18 H 0.096 0.904 19 N -0.840 5.840 20 C -0.134 4.134 21 C -0.115 4.115 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.084 4.084 25 C -0.050 4.050 26 H 0.033 0.967 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.036 0.964 31 H 0.258 0.742 32 H 0.326 0.674 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.337 0.663 36 H 0.338 0.662 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 9.060 6.094 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.112 3.888 4 H 0.044 0.956 5 C -0.522 4.522 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.302 5.302 14 C 0.012 3.988 15 H 0.064 0.936 16 C -0.150 4.150 17 C 0.028 3.972 18 H 0.114 0.886 19 N -0.367 5.367 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.103 4.103 25 C -0.052 4.052 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.686 8.793 6.412 12.772 hybrid contribution 0.745 0.072 -1.247 1.454 sum -5.941 8.865 5.165 11.856 Atomic orbital electron populations 1.21881 0.99493 0.99594 0.99579 1.22203 0.91477 1.01812 1.03111 1.19257 0.95487 0.88753 0.85261 0.95567 1.21272 0.91282 1.35341 1.04338 0.92013 1.24932 0.97904 0.95795 0.95974 1.69866 1.34486 1.39966 1.09656 0.86536 0.86106 0.77463 0.77893 1.19811 1.21251 1.21285 1.60750 1.37648 1.18702 1.13059 1.20985 0.91617 0.91152 0.95085 0.93575 1.22542 0.98417 0.97736 0.96274 1.20906 0.93447 0.91773 0.91058 0.88594 1.59046 1.13361 1.23123 1.41157 1.21409 1.00587 0.94332 0.97364 1.20374 1.00628 0.95004 0.97350 1.20880 1.01183 0.99454 0.93208 1.21005 1.00267 0.94113 0.98577 1.20786 0.96609 0.95182 0.97696 1.20477 0.96845 0.94999 0.92864 0.94823 0.93852 0.94545 0.88108 0.94474 0.93234 0.85500 0.90169 0.90980 0.85032 0.84977 0.87378 0.86681 0.86415 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.98 37.16 0.33 -2.46 16 2 C -0.15 -3.34 5.06 -26.73 -0.14 -3.48 16 3 C 0.22 5.26 2.03 -68.86 -0.14 5.12 16 4 H 0.03 0.70 7.02 -51.93 -0.36 0.33 16 5 C -0.48 -13.19 8.84 -34.44 -0.30 -13.49 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.28 11.29 55.43 0.63 -24.65 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.67 -13.66 5.91 -101.00 -0.60 -14.25 16 14 C 0.12 2.17 2.46 -67.76 -0.17 2.00 16 15 H 0.05 0.86 7.11 -51.93 -0.37 0.49 16 16 C -0.11 -1.60 6.42 -25.24 -0.16 -1.76 16 17 C 0.14 1.96 4.00 -67.83 -0.27 1.69 16 18 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 19 N -0.84 -9.59 9.29 -4.77 -0.04 -9.63 16 20 C -0.13 -2.13 5.77 -104.20 -0.60 -2.73 16 21 C -0.12 -1.66 9.91 -39.54 -0.39 -2.05 16 22 C -0.13 -1.87 10.05 -39.63 -0.40 -2.27 16 23 C -0.12 -1.96 10.05 -39.63 -0.40 -2.36 16 24 C -0.08 -1.57 10.03 -39.53 -0.40 -1.97 16 25 C -0.05 -0.92 5.70 -104.20 -0.59 -1.51 16 26 H 0.03 0.57 7.24 -51.93 -0.38 0.19 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 30 H 0.04 0.83 8.05 -51.92 -0.42 0.41 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.33 6.21 7.04 -39.29 -0.28 5.94 16 33 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 34 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 35 H 0.34 3.38 8.91 -39.29 -0.35 3.03 16 36 H 0.34 3.60 8.85 -39.29 -0.35 3.25 16 37 H 0.11 1.27 8.00 -52.49 -0.42 0.85 16 38 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 39 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.12 2.45 7.67 -52.48 -0.40 2.05 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -28.37 319.95 -10.03 -38.41 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.10 Total: 12.58 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -3.72 Total: -23.90 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.01 Total: -48.54 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.37 -10.03 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132091061.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.188 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds