Wall clock time and date at job start Mon Mar 30 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86803 * 119.99613 * 2 1 4 4 H 1.48505 * 109.47124 * 239.99837 * 3 2 1 5 5 H 1.48499 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47487 * 120.00094 * 3 2 1 7 7 C 1.39858 * 120.00611 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00365 * 163.05971 * 7 2 1 9 9 C 1.41144 * 119.99800 * 343.06320 * 7 2 1 10 10 C 1.40884 * 120.15428 * 154.53061 * 9 7 2 11 11 C 1.36342 * 119.83484 * 179.97438 * 10 9 7 12 12 C 1.39570 * 120.15771 * 359.97438 * 11 10 9 13 13 N 1.38863 * 119.83497 * 179.97438 * 12 11 10 14 14 C 1.46506 * 119.99690 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47220 * 179.97438 * 14 13 12 16 16 H 1.09004 * 109.53288 * 55.10120 * 15 14 13 17 17 C 1.53114 * 109.49556 * 175.19749 * 15 14 13 18 18 C 1.53114 * 109.15315 * 177.60871 * 17 15 14 19 19 C 1.53042 * 109.27691 * 302.34119 * 18 17 15 20 20 N 1.46837 * 109.52400 * 59.17864 * 19 18 17 21 21 C 1.46850 * 111.20190 * 298.25768 * 20 19 18 22 22 C 1.39556 * 120.32156 * 0.27444 * 12 11 10 23 23 C 1.36345 * 120.15727 * 359.48091 * 22 12 11 24 24 H 0.96993 * 120.00228 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.08570 * 359.95770 * 10 9 7 26 26 H 1.07998 * 119.91995 * 179.97438 * 11 10 9 27 27 H 0.96990 * 120.00686 * 359.97438 * 13 12 11 28 28 H 1.09003 * 109.47272 * 59.99177 * 14 13 12 29 29 H 1.09008 * 109.46904 * 299.99814 * 14 13 12 30 30 H 1.09005 * 109.53248 * 57.70225 * 17 15 14 31 31 H 1.09001 * 109.57799 * 297.53937 * 17 15 14 32 32 H 1.09006 * 109.50475 * 182.40235 * 18 17 15 33 33 H 1.08993 * 109.53655 * 62.30214 * 18 17 15 34 34 H 1.09006 * 109.46193 * 299.16225 * 19 18 17 35 35 H 1.09003 * 109.46012 * 179.19932 * 19 18 17 36 36 H 1.00899 * 111.00156 * 62.35660 * 20 19 18 37 37 H 1.08997 * 109.46625 * 181.75311 * 21 20 19 38 38 H 1.08999 * 109.46171 * 301.73943 * 21 20 19 39 39 H 1.07997 * 119.92386 * 179.72392 * 22 12 11 40 40 H 1.08001 * 120.08462 * 180.23203 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6965 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6966 1.2124 7 6 2.0085 -1.2111 0.0005 8 1 3.0533 -1.2315 -0.2720 9 6 1.3488 -2.4069 0.3572 10 6 1.8177 -3.6448 -0.1250 11 6 1.1757 -4.7959 0.2240 12 6 0.0570 -4.7498 1.0573 13 7 -0.5920 -5.9262 1.4081 14 6 -1.7669 -5.8820 2.2821 15 6 -2.2870 -7.3027 2.5099 16 1 -1.4824 -7.9275 2.8979 17 6 -3.4397 -7.2696 3.5171 18 6 -3.9931 -8.6863 3.6940 19 6 -4.4464 -9.2249 2.3352 20 7 -3.3082 -9.2371 1.4076 21 6 -2.7898 -7.8812 1.1853 22 6 -0.4162 -3.5267 1.5345 23 6 0.2188 -2.3681 1.1977 24 1 -0.4850 0.8400 -0.0004 25 1 2.6833 -3.6819 -0.7698 26 1 1.5338 -5.7455 -0.1452 27 1 -0.2680 -6.7772 1.0740 28 1 -2.5461 -5.2810 1.8133 29 1 -1.4916 -5.4377 3.2387 30 1 -4.2281 -6.6141 3.1473 31 1 -3.0768 -6.8981 4.4755 32 1 -4.8418 -8.6627 4.3777 33 1 -3.2159 -9.3330 4.1009 34 1 -5.2339 -8.5858 1.9355 35 1 -4.8279 -10.2389 2.4554 36 1 -2.5801 -9.8532 1.7367 37 1 -1.9679 -7.9193 0.4704 38 1 -3.5850 -7.2484 0.7912 39 1 -1.2850 -3.4982 2.1753 40 1 -0.1462 -1.4226 1.5708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132114579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:23 Heat of formation + Delta-G solvation = 6.307822 kcal Electronic energy + Delta-G solvation = -18850.872533 eV Core-core repulsion = 16049.928573 eV Total energy + Delta-G solvation = -2800.943960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.29872 -37.77967 -35.18154 -33.26560 -31.95252 -31.08819 -29.43961 -28.43193 -25.69083 -24.01230 -23.64421 -21.96498 -21.00048 -20.20082 -19.78063 -17.17964 -16.41996 -15.79987 -15.45368 -15.06520 -14.90463 -14.71242 -13.89308 -13.78070 -13.15086 -13.06377 -12.68735 -12.51128 -12.30511 -12.14446 -11.81393 -11.67024 -11.44409 -11.30724 -11.12294 -10.99781 -10.85748 -10.71469 -10.48765 -10.41134 -9.68050 -9.26257 -9.20469 -8.56716 -8.43982 -7.47333 -6.60789 -6.35985 -4.01700 2.95086 3.12042 3.15558 3.18907 3.37888 4.07266 4.12032 4.24879 4.58524 4.69540 4.79141 4.87163 4.88139 5.16178 5.26430 5.40931 5.45172 5.66413 5.69507 5.73342 5.84167 5.84942 5.96227 6.03890 6.11529 6.27939 6.29591 6.34938 6.83322 6.95409 6.95904 7.19163 7.22490 7.38218 7.57374 7.71141 7.86300 8.17358 8.31259 8.51572 8.72337 8.82048 9.08380 9.17449 10.40613 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046550 B = 0.003543 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.364080 B = 7900.066665 C = 8222.304194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.186 4.186 11 C -0.160 4.160 12 C 0.093 3.907 13 N -0.761 5.761 14 C 0.148 3.852 15 C -0.133 4.133 16 H 0.071 0.929 17 C -0.113 4.113 18 C -0.156 4.156 19 C 0.055 3.945 20 N -0.687 5.687 21 C 0.063 3.937 22 C -0.164 4.164 23 C -0.123 4.123 24 H 0.276 0.724 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.383 0.617 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.338 0.662 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 -13.115 6.040 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.500 4.500 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.206 4.206 11 C -0.182 4.182 12 C -0.004 4.004 13 N -0.397 5.397 14 C 0.021 3.979 15 C -0.153 4.153 16 H 0.089 0.911 17 C -0.151 4.151 18 C -0.196 4.196 19 C -0.075 4.075 20 N -0.315 5.315 21 C -0.067 4.067 22 C -0.186 4.186 23 C -0.143 4.143 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.215 0.785 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.155 0.845 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.007 -12.848 5.547 16.123 hybrid contribution 0.905 0.735 0.762 1.392 sum -7.102 -12.114 6.308 15.394 Atomic orbital electron populations 1.69841 1.07322 1.28652 1.37891 1.25785 0.94668 1.00829 0.92759 0.86459 0.80102 0.80876 0.79701 1.19290 1.20604 1.19127 1.19332 0.97510 0.91285 1.41840 0.91021 1.17486 0.92504 0.91990 0.90866 1.20554 1.02608 0.92700 1.04742 1.19808 0.97955 0.97060 1.03375 1.17351 0.95525 0.85651 1.01893 1.43862 1.32565 1.05938 1.57349 1.20945 0.88478 0.94385 0.94043 1.22071 0.97899 0.97881 0.97470 0.91080 1.21539 0.97708 0.96737 0.99136 1.22254 1.01137 0.97141 0.99039 1.22034 0.94218 1.01130 0.90084 1.60679 1.11539 1.10202 1.49032 1.22090 1.00057 0.88881 0.95627 1.20086 1.01428 0.92006 1.05087 1.20935 0.98113 0.96362 0.98932 0.91313 0.89071 0.89645 0.78485 0.93440 0.93666 0.91535 0.91715 0.91483 0.92118 0.90931 0.90987 0.84454 0.90334 0.90739 0.89500 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.75 10.96 55.54 0.61 -21.14 16 2 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 3 Si 0.90 19.45 29.59 -169.99 -5.03 14.42 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.47 -12.89 9.03 -37.87 -0.34 -13.23 16 8 H 0.07 1.90 7.90 -52.49 -0.41 1.49 16 9 C 0.07 2.04 5.57 -106.79 -0.59 1.44 16 10 C -0.19 -4.66 9.74 -39.26 -0.38 -5.05 16 11 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 12 C 0.09 2.04 6.67 -83.69 -0.56 1.48 16 13 N -0.76 -13.10 5.44 -58.49 -0.32 -13.41 16 14 C 0.15 2.17 4.28 -4.04 -0.02 2.15 16 15 C -0.13 -1.48 2.37 -90.54 -0.21 -1.69 16 16 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.11 -1.11 5.29 -26.61 -0.14 -1.25 16 18 C -0.16 -1.28 6.08 -26.65 -0.16 -1.44 16 19 C 0.06 0.47 6.55 -3.84 -0.03 0.45 16 20 N -0.69 -6.78 6.87 -113.82 -0.78 -7.57 16 21 C 0.06 0.70 5.70 -3.83 -0.02 0.68 16 22 C -0.16 -3.90 9.23 -39.77 -0.37 -4.27 16 23 C -0.12 -3.28 8.63 -39.26 -0.34 -3.62 16 24 H 0.28 6.81 8.30 -40.82 -0.34 6.48 16 25 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 26 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.38 5.86 7.66 -40.82 -0.31 5.55 16 28 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 29 H 0.05 0.70 7.94 -51.92 -0.41 0.29 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.34 2.96 8.86 -39.29 -0.35 2.61 16 37 H 0.08 0.93 7.20 -51.93 -0.37 0.56 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.89 6.68 -52.49 -0.35 1.54 16 40 H 0.12 3.24 6.19 -52.49 -0.32 2.91 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -28.22 318.17 -10.68 -38.90 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.31 Total: 10.51 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -3.64 Total: -26.50 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.49 Total: -42.12 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.22 -10.68 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132114579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.210 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds