Wall clock time and date at job start Mon Mar 30 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86803 * 119.99613 * 2 1 4 4 H 1.48505 * 109.47124 * 239.99837 * 3 2 1 5 5 H 1.48499 * 109.47132 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47487 * 120.00094 * 3 2 1 7 7 C 1.39858 * 120.00611 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00365 * 163.05971 * 7 2 1 9 9 C 1.41144 * 119.99800 * 343.06320 * 7 2 1 10 10 C 1.40884 * 120.15428 * 154.53061 * 9 7 2 11 11 C 1.36342 * 119.83484 * 179.97438 * 10 9 7 12 12 C 1.39570 * 120.15771 * 359.97438 * 11 10 9 13 13 N 1.38863 * 119.83497 * 179.97438 * 12 11 10 14 14 C 1.46506 * 119.99690 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47220 * 179.97438 * 14 13 12 16 16 H 1.09004 * 109.53288 * 55.10120 * 15 14 13 17 17 C 1.53114 * 109.49556 * 175.19749 * 15 14 13 18 18 C 1.53114 * 109.15315 * 177.60871 * 17 15 14 19 19 C 1.53042 * 109.27691 * 302.34119 * 18 17 15 20 20 N 1.46837 * 109.52400 * 59.17864 * 19 18 17 21 21 C 1.46850 * 111.20190 * 298.25768 * 20 19 18 22 22 C 1.39556 * 120.32156 * 0.27444 * 12 11 10 23 23 C 1.36345 * 120.15727 * 359.48091 * 22 12 11 24 24 H 0.96993 * 120.00228 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.08570 * 359.95770 * 10 9 7 26 26 H 1.07998 * 119.91995 * 179.97438 * 11 10 9 27 27 H 0.96990 * 120.00686 * 359.97438 * 13 12 11 28 28 H 1.09003 * 109.47272 * 59.99177 * 14 13 12 29 29 H 1.09008 * 109.46904 * 299.99814 * 14 13 12 30 30 H 1.09005 * 109.53248 * 57.70225 * 17 15 14 31 31 H 1.09001 * 109.57799 * 297.53937 * 17 15 14 32 32 H 1.09006 * 109.50475 * 182.40235 * 18 17 15 33 33 H 1.08993 * 109.53655 * 62.30214 * 18 17 15 34 34 H 1.09006 * 109.46193 * 299.16225 * 19 18 17 35 35 H 1.09003 * 109.46012 * 179.19932 * 19 18 17 36 36 H 1.00899 * 111.00156 * 62.35660 * 20 19 18 37 37 H 1.08997 * 109.46625 * 181.75311 * 21 20 19 38 38 H 1.08999 * 109.46171 * 301.73943 * 21 20 19 39 39 H 1.07997 * 119.92386 * 179.72392 * 22 12 11 40 40 H 1.08001 * 120.08462 * 180.23203 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6965 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6966 1.2124 7 6 2.0085 -1.2111 0.0005 8 1 3.0533 -1.2315 -0.2720 9 6 1.3488 -2.4069 0.3572 10 6 1.8177 -3.6448 -0.1250 11 6 1.1757 -4.7959 0.2240 12 6 0.0570 -4.7498 1.0573 13 7 -0.5920 -5.9262 1.4081 14 6 -1.7669 -5.8820 2.2821 15 6 -2.2870 -7.3027 2.5099 16 1 -1.4824 -7.9275 2.8979 17 6 -3.4397 -7.2696 3.5171 18 6 -3.9931 -8.6863 3.6940 19 6 -4.4464 -9.2249 2.3352 20 7 -3.3082 -9.2371 1.4076 21 6 -2.7898 -7.8812 1.1853 22 6 -0.4162 -3.5267 1.5345 23 6 0.2188 -2.3681 1.1977 24 1 -0.4850 0.8400 -0.0004 25 1 2.6833 -3.6819 -0.7698 26 1 1.5338 -5.7455 -0.1452 27 1 -0.2680 -6.7772 1.0740 28 1 -2.5461 -5.2810 1.8133 29 1 -1.4916 -5.4377 3.2387 30 1 -4.2281 -6.6141 3.1473 31 1 -3.0768 -6.8981 4.4755 32 1 -4.8418 -8.6627 4.3777 33 1 -3.2159 -9.3330 4.1009 34 1 -5.2339 -8.5858 1.9355 35 1 -4.8279 -10.2389 2.4554 36 1 -2.5801 -9.8532 1.7367 37 1 -1.9679 -7.9193 0.4704 38 1 -3.5850 -7.2484 0.7912 39 1 -1.2850 -3.4982 2.1753 40 1 -0.1462 -1.4226 1.5708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132114579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:23 Heat of formation + Delta-G solvation = -10.798837 kcal Electronic energy + Delta-G solvation = -18851.614334 eV Core-core repulsion = 16049.928573 eV Total energy + Delta-G solvation = -2801.685760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31803 -39.44265 -36.72391 -34.96952 -32.99822 -32.16023 -31.35326 -30.13040 -27.11388 -25.56840 -24.55886 -23.28446 -22.51081 -21.50708 -21.13360 -19.14702 -17.87154 -16.90675 -16.77742 -16.41312 -16.30581 -15.66032 -15.54041 -14.82794 -14.54094 -14.44518 -14.27757 -13.89625 -13.76375 -13.46381 -13.18167 -13.10218 -12.76250 -12.71795 -12.58377 -12.27218 -12.20685 -12.03504 -11.58668 -11.57642 -11.35464 -11.16370 -11.06191 -10.30286 -9.40988 -9.27169 -8.53690 -8.15766 -6.01303 1.11355 1.18670 1.39971 1.51022 1.59880 2.27608 2.84503 2.88824 3.35546 3.73609 3.84803 3.86898 3.94394 4.12227 4.33115 4.42726 4.46566 4.50859 4.55762 4.63402 4.74008 4.80329 4.97660 5.01126 5.03843 5.10595 5.13408 5.16190 5.20282 5.28266 5.39073 5.45827 5.68518 5.80307 5.96226 6.05656 6.18903 6.38974 6.49494 6.66888 6.86827 7.08642 7.14918 7.31823 8.49253 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.046550 B = 0.003543 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.364080 B = 7900.066665 C = 8222.304194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.035 3.965 10 C -0.194 4.194 11 C -0.166 4.166 12 C 0.112 3.888 13 N -0.748 5.748 14 C 0.146 3.854 15 C -0.118 4.118 16 H 0.079 0.921 17 C -0.114 4.114 18 C -0.149 4.149 19 C 0.054 3.946 20 N -0.692 5.692 21 C 0.068 3.932 22 C -0.176 4.176 23 C -0.143 4.143 24 H 0.282 0.718 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.396 0.604 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.347 0.653 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.623 -14.811 6.678 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.214 4.214 11 C -0.188 4.188 12 C 0.013 3.987 13 N -0.384 5.384 14 C 0.020 3.980 15 C -0.139 4.139 16 H 0.097 0.903 17 C -0.152 4.152 18 C -0.188 4.188 19 C -0.075 4.075 20 N -0.320 5.320 21 C -0.062 4.062 22 C -0.198 4.198 23 C -0.163 4.163 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.137 0.863 27 H 0.231 0.769 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.165 0.835 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.387 -14.604 6.194 17.944 hybrid contribution 0.930 1.058 0.591 1.528 sum -7.457 -13.546 6.785 16.886 Atomic orbital electron populations 1.69912 1.08746 1.29796 1.38731 1.26618 0.95478 1.04110 0.91863 0.85335 0.78729 0.76261 0.79788 1.18625 1.19484 1.18767 1.19578 0.97655 0.92669 1.43993 0.91373 1.17813 0.93634 0.93097 0.92243 1.20776 1.02993 0.92938 1.04732 1.20114 0.97825 0.97691 1.03156 1.17464 0.94767 0.86631 0.99886 1.43893 1.32589 1.04990 1.56913 1.21074 0.87133 0.96827 0.92952 1.21953 0.98511 0.95325 0.98064 0.90309 1.21551 0.96999 0.98008 0.98621 1.22196 1.01717 0.95814 0.99067 1.22089 0.93539 1.02002 0.89908 1.60658 1.12101 1.09345 1.49889 1.21957 0.99369 0.89570 0.95273 1.20233 1.01923 0.92027 1.05654 1.20860 0.98896 0.96607 0.99949 0.90804 0.88441 0.86348 0.76899 0.94464 0.94155 0.92034 0.91538 0.90190 0.91451 0.91605 0.89405 0.83506 0.91017 0.92066 0.88016 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.79 10.96 21.81 0.24 -46.56 16 2 C 0.03 1.65 5.15 85.22 0.44 2.09 16 3 Si 0.98 40.62 29.59 68.60 2.03 42.65 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 7 C -0.51 -28.94 9.03 23.38 0.21 -28.73 16 8 H 0.07 3.75 7.90 -2.91 -0.02 3.73 16 9 C 0.03 1.98 5.57 -21.27 -0.12 1.86 16 10 C -0.19 -9.84 9.74 22.48 0.22 -9.62 16 11 C -0.17 -7.31 9.82 22.15 0.22 -7.09 16 12 C 0.11 4.79 6.67 38.67 0.26 5.05 16 13 N -0.75 -24.22 5.44 -338.97 -1.84 -26.06 16 14 C 0.15 4.04 4.28 86.38 0.37 4.42 16 15 C -0.12 -2.36 2.37 -10.74 -0.03 -2.39 16 16 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 17 C -0.11 -1.97 5.29 30.67 0.16 -1.81 16 18 C -0.15 -2.00 6.08 30.65 0.19 -1.81 16 19 C 0.05 0.78 6.55 86.33 0.57 1.35 16 20 N -0.69 -11.97 6.87 -514.00 -3.53 -15.50 16 21 C 0.07 1.39 5.70 86.33 0.49 1.89 16 22 C -0.18 -8.42 9.23 22.15 0.20 -8.22 16 23 C -0.14 -7.87 8.63 22.48 0.19 -7.67 16 24 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 25 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 26 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.40 11.00 7.66 -92.72 -0.71 10.29 16 28 H 0.04 1.14 7.92 -2.39 -0.02 1.12 16 29 H 0.04 1.19 7.94 -2.38 -0.02 1.17 16 30 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.35 5.07 8.86 -89.69 -0.79 4.27 16 37 H 0.07 1.55 7.20 -2.39 -0.02 1.54 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 4.44 6.68 -2.91 -0.02 4.42 16 40 H 0.10 5.66 6.19 -2.91 -0.02 5.64 16 Total: -1.00 -62.09 318.17 -0.20 -62.29 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.47 Total: 33.86 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 3.37 Total: -50.69 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -5.13 Total: -88.11 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -62.09 -0.20 -62.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132114579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.491 kcal (2) G-P(sol) polarization free energy of solvation -62.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds