Wall clock time and date at job start Mon Mar 30 2020 07:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46809 * 2 1 4 4 H 1.08996 * 109.47198 * 319.82901 * 3 2 1 5 5 C 1.50697 * 109.46939 * 199.82084 * 3 2 1 6 6 H 1.07997 * 120.00099 * 245.45251 * 5 3 2 7 7 C 1.37881 * 119.99558 * 65.45741 * 5 3 2 8 8 N 1.31507 * 120.00293 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99501 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47252 * 60.00125 * 9 7 5 11 11 H 1.48498 * 109.46803 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47410 * 299.99839 * 9 7 5 13 13 N 1.46900 * 109.46897 * 79.82474 * 3 2 1 14 14 C 1.39730 * 111.00046 * 326.38380 * 13 3 2 15 15 C 1.39094 * 118.86036 * 77.32377 * 14 13 3 16 16 C 1.38123 * 120.21884 * 180.31736 * 15 14 13 17 17 C 1.38254 * 120.30136 * 0.33972 * 16 15 14 18 18 C 1.38272 * 119.97568 * 359.37893 * 17 16 15 19 19 C 1.38657 * 120.00220 * 0.47530 * 18 17 16 20 20 N 1.40476 * 119.46548 * 180.12790 * 19 18 17 21 21 C 1.47271 * 117.63645 * 191.33801 * 20 19 18 22 22 C 1.46557 * 111.00285 * 199.80637 * 13 3 2 23 23 H 1.08997 * 109.53535 * 191.85129 * 22 13 3 24 24 C 1.53007 * 109.52824 * 312.00012 * 22 13 3 25 25 H 1.08997 * 109.47940 * 293.86271 * 1 2 3 26 26 H 1.09000 * 109.47726 * 53.87505 * 1 2 3 27 27 H 1.09010 * 109.46886 * 173.86911 * 1 2 3 28 28 H 1.09000 * 109.47223 * 240.00204 * 2 1 3 29 29 H 1.08997 * 109.46810 * 119.99820 * 2 1 3 30 30 H 0.97000 * 119.99922 * 179.97438 * 8 7 5 31 31 H 1.08000 * 119.88765 * 0.34375 * 15 14 13 32 32 H 1.08000 * 119.84863 * 180.02562 * 16 15 14 33 33 H 1.07996 * 120.01016 * 179.64261 * 17 16 15 34 34 H 1.07996 * 119.99914 * 180.20957 * 18 17 16 35 35 H 0.97001 * 121.18071 * 11.32294 * 20 19 18 36 36 H 1.09001 * 109.90006 * 199.46401 * 21 20 19 37 37 H 1.09000 * 109.90196 * 78.32788 * 21 20 19 38 38 H 1.08995 * 109.46815 * 65.38515 * 24 22 13 39 39 H 1.08995 * 109.47047 * 185.38281 * 24 22 13 40 40 H 1.08997 * 109.46820 * 305.38396 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.4207 2.0468 -0.6629 5 6 3.4675 1.4706 -0.4818 6 1 4.2583 1.7706 0.1899 7 6 3.7641 1.1135 -1.7801 8 7 2.8012 0.7479 -2.5978 9 14 5.5336 1.1490 -2.3775 10 1 6.3525 0.2229 -1.5547 11 1 5.5846 0.7237 -3.7993 12 1 6.0705 2.5280 -2.2532 13 7 1.9724 1.9857 1.3632 14 6 0.8775 1.4634 2.0567 15 6 0.9594 0.1716 2.5658 16 6 -0.1086 -0.3749 3.2502 17 6 -1.2695 0.3544 3.4287 18 6 -1.3600 1.6417 2.9319 19 6 -0.2902 2.1971 2.2466 20 7 -0.3933 3.5068 1.7491 21 6 0.6492 3.9673 0.8163 22 6 1.9940 3.4510 1.3465 23 1 2.1548 3.8247 2.3577 24 6 3.1244 3.9355 0.4362 25 1 -0.3635 0.4157 0.9397 26 1 -0.3634 0.6058 -0.8300 27 1 -0.3633 -1.0219 -0.1098 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0098 0.4970 -3.5113 31 1 1.8613 -0.4058 2.4259 32 1 -0.0384 -1.3783 3.6434 33 1 -2.1039 -0.0796 3.9595 34 1 -2.2654 2.2129 3.0741 35 1 -1.1253 4.0871 2.0105 36 1 0.6585 5.0566 0.7788 37 1 0.4623 3.5623 -0.1783 38 1 2.9122 3.6449 -0.5926 39 1 3.2012 5.0210 0.4987 40 1 4.0650 3.4858 0.7543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133693245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:32 Heat of formation + Delta-G solvation = 64.347602 kcal Electronic energy + Delta-G solvation = -21112.315351 eV Core-core repulsion = 18313.888185 eV Total energy + Delta-G solvation = -2798.427166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54139 -36.83391 -35.30306 -32.65975 -31.95454 -30.21503 -29.52772 -27.53019 -26.61724 -24.30745 -23.03035 -21.77134 -21.43117 -20.69447 -18.23344 -16.87539 -16.43385 -15.92434 -15.53414 -14.87400 -14.33490 -14.01481 -13.74810 -13.54272 -13.07094 -12.82577 -12.60829 -12.10203 -11.77692 -11.64697 -11.34208 -11.16736 -11.11329 -10.94738 -10.85840 -10.62822 -10.55885 -10.37766 -9.78664 -9.62167 -9.54168 -9.21288 -8.96578 -8.38606 -8.17831 -7.23309 -6.62815 -6.00333 -4.01557 2.03192 2.17866 3.31489 3.36905 3.39415 3.87557 4.36586 4.46807 4.78836 5.28799 5.36823 5.48138 5.56454 5.64381 5.74157 5.89633 5.97112 6.08749 6.16370 6.29818 6.37788 6.42240 6.49698 6.61376 6.64608 6.75795 6.82995 6.93970 7.07647 7.15666 7.19419 7.26037 7.33662 7.35557 7.48842 7.70601 7.82799 7.87481 8.14470 8.25988 8.34913 8.64092 9.01416 9.58521 11.05974 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.008168 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.831590 B = 3427.102668 C = 3973.580139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.125 4.125 3 C 0.223 3.777 4 H 0.019 0.981 5 C -0.495 4.495 6 H 0.066 0.934 7 C 0.057 3.943 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.277 1.277 13 N -0.487 5.487 14 C 0.077 3.923 15 C -0.076 4.076 16 C -0.165 4.165 17 C -0.110 4.110 18 C -0.183 4.183 19 C 0.159 3.841 20 N -0.757 5.757 21 C 0.090 3.910 22 C 0.082 3.918 23 H 0.068 0.932 24 C -0.136 4.136 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.260 0.740 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.395 0.605 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.032 0.968 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 3.332 7.990 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.163 4.163 3 C 0.121 3.879 4 H 0.036 0.964 5 C -0.534 4.534 6 H 0.085 0.915 7 C -0.144 4.144 8 N -0.530 5.530 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.204 5.204 14 C -0.025 4.025 15 C -0.097 4.097 16 C -0.185 4.185 17 C -0.130 4.130 18 C -0.207 4.207 19 C 0.056 3.944 20 N -0.390 5.390 21 C -0.037 4.037 22 C -0.028 4.028 23 H 0.086 0.914 24 C -0.193 4.193 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.229 0.771 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.191 3.189 7.846 9.933 hybrid contribution -0.157 0.455 -0.820 0.951 sum -5.348 3.643 7.026 9.552 Atomic orbital electron populations 1.22430 0.98828 0.99414 1.01726 1.21963 0.92565 0.99676 1.02138 1.19496 0.96737 0.91408 0.80292 0.96365 1.21208 0.92359 1.44026 0.95802 0.91545 1.24912 0.96925 0.95748 0.96844 1.69946 1.31439 1.45524 1.06106 0.86669 0.85363 0.78463 0.77578 1.20317 1.21541 1.20302 1.59155 1.35648 1.06001 1.19563 1.18374 0.88069 0.94738 1.01285 1.20955 0.99063 0.93977 0.95670 1.20686 0.94334 1.00011 1.03509 1.20627 0.97600 0.93956 1.00795 1.20344 0.97453 0.96836 1.06021 1.18058 0.92814 0.86747 0.96828 1.44719 1.30148 1.12089 1.52017 1.22321 0.89347 0.98819 0.93185 1.21870 0.93887 0.87909 0.99142 0.91390 1.22034 0.98316 0.97132 1.01833 0.91402 0.94595 0.95241 0.89737 0.92794 0.92992 0.85300 0.87050 0.87199 0.87346 0.77099 0.90991 0.91778 0.89570 0.94942 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 8.87 37.16 0.33 -3.30 16 2 C -0.13 -2.96 4.82 -26.73 -0.13 -3.09 16 3 C 0.22 5.34 1.17 -68.86 -0.08 5.26 16 4 H 0.02 0.50 5.67 -51.93 -0.29 0.20 16 5 C -0.50 -12.66 5.76 -34.44 -0.20 -12.86 16 6 H 0.07 1.71 6.21 -52.49 -0.33 1.38 16 7 C 0.06 1.50 5.17 -17.82 -0.09 1.40 16 8 N -0.89 -24.58 11.83 55.43 0.66 -23.93 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.49 -10.35 4.36 -157.18 -0.69 -11.04 16 14 C 0.08 1.52 3.36 -83.58 -0.28 1.24 16 15 C -0.08 -1.42 6.40 -39.31 -0.25 -1.67 16 16 C -0.16 -2.66 9.56 -39.62 -0.38 -3.04 16 17 C -0.11 -1.67 9.81 -39.56 -0.39 -2.06 16 18 C -0.18 -2.92 9.55 -39.41 -0.38 -3.29 16 19 C 0.16 2.85 5.52 -83.38 -0.46 2.39 16 20 N -0.76 -12.19 5.93 -57.61 -0.34 -12.53 16 21 C 0.09 1.53 6.39 -3.36 -0.02 1.50 16 22 C 0.08 1.54 2.95 -67.64 -0.20 1.34 16 23 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 24 C -0.14 -2.56 7.71 37.16 0.29 -2.27 16 25 H 0.07 1.39 2.39 -51.93 -0.12 1.26 16 26 H 0.03 0.82 8.01 -51.93 -0.42 0.41 16 27 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.08 2.25 6.32 -51.93 -0.33 1.92 16 29 H 0.05 1.22 4.64 -51.93 -0.24 0.98 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.13 2.47 6.30 -52.49 -0.33 2.14 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.39 5.20 8.89 -40.82 -0.36 4.83 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.27 6.48 -51.93 -0.34 0.93 16 38 H 0.09 1.87 6.00 -51.93 -0.31 1.56 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.43 6.50 -51.93 -0.34 1.10 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -27.41 292.47 -8.73 -36.14 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.50 Total: 9.77 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.24 Total: -18.46 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.37 Total: -47.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.41 -8.73 -36.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133693245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.487 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds