Wall clock time and date at job start Mon Mar 30 2020 07:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46809 * 2 1 4 4 H 1.08996 * 109.47198 * 319.82901 * 3 2 1 5 5 C 1.50697 * 109.46939 * 199.82084 * 3 2 1 6 6 H 1.07997 * 120.00099 * 245.45251 * 5 3 2 7 7 C 1.37881 * 119.99558 * 65.45741 * 5 3 2 8 8 N 1.31507 * 120.00293 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99501 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47252 * 60.00125 * 9 7 5 11 11 H 1.48498 * 109.46803 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47410 * 299.99839 * 9 7 5 13 13 N 1.46900 * 109.46897 * 79.82474 * 3 2 1 14 14 C 1.39730 * 111.00046 * 326.38380 * 13 3 2 15 15 C 1.39094 * 118.86036 * 77.32377 * 14 13 3 16 16 C 1.38123 * 120.21884 * 180.31736 * 15 14 13 17 17 C 1.38254 * 120.30136 * 0.33972 * 16 15 14 18 18 C 1.38272 * 119.97568 * 359.37893 * 17 16 15 19 19 C 1.38657 * 120.00220 * 0.47530 * 18 17 16 20 20 N 1.40476 * 119.46548 * 180.12790 * 19 18 17 21 21 C 1.47271 * 117.63645 * 191.33801 * 20 19 18 22 22 C 1.46557 * 111.00285 * 199.80637 * 13 3 2 23 23 H 1.08997 * 109.53535 * 191.85129 * 22 13 3 24 24 C 1.53007 * 109.52824 * 312.00012 * 22 13 3 25 25 H 1.08997 * 109.47940 * 293.86271 * 1 2 3 26 26 H 1.09000 * 109.47726 * 53.87505 * 1 2 3 27 27 H 1.09010 * 109.46886 * 173.86911 * 1 2 3 28 28 H 1.09000 * 109.47223 * 240.00204 * 2 1 3 29 29 H 1.08997 * 109.46810 * 119.99820 * 2 1 3 30 30 H 0.97000 * 119.99922 * 179.97438 * 8 7 5 31 31 H 1.08000 * 119.88765 * 0.34375 * 15 14 13 32 32 H 1.08000 * 119.84863 * 180.02562 * 16 15 14 33 33 H 1.07996 * 120.01016 * 179.64261 * 17 16 15 34 34 H 1.07996 * 119.99914 * 180.20957 * 18 17 16 35 35 H 0.97001 * 121.18071 * 11.32294 * 20 19 18 36 36 H 1.09001 * 109.90006 * 199.46401 * 21 20 19 37 37 H 1.09000 * 109.90196 * 78.32788 * 21 20 19 38 38 H 1.08995 * 109.46815 * 65.38515 * 24 22 13 39 39 H 1.08995 * 109.47047 * 185.38281 * 24 22 13 40 40 H 1.08997 * 109.46820 * 305.38396 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.4207 2.0468 -0.6629 5 6 3.4675 1.4706 -0.4818 6 1 4.2583 1.7706 0.1899 7 6 3.7641 1.1135 -1.7801 8 7 2.8012 0.7479 -2.5978 9 14 5.5336 1.1490 -2.3775 10 1 6.3525 0.2229 -1.5547 11 1 5.5846 0.7237 -3.7993 12 1 6.0705 2.5280 -2.2532 13 7 1.9724 1.9857 1.3632 14 6 0.8775 1.4634 2.0567 15 6 0.9594 0.1716 2.5658 16 6 -0.1086 -0.3749 3.2502 17 6 -1.2695 0.3544 3.4287 18 6 -1.3600 1.6417 2.9319 19 6 -0.2902 2.1971 2.2466 20 7 -0.3933 3.5068 1.7491 21 6 0.6492 3.9673 0.8163 22 6 1.9940 3.4510 1.3465 23 1 2.1548 3.8247 2.3577 24 6 3.1244 3.9355 0.4362 25 1 -0.3635 0.4157 0.9397 26 1 -0.3634 0.6058 -0.8300 27 1 -0.3633 -1.0219 -0.1098 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0098 0.4970 -3.5113 31 1 1.8613 -0.4058 2.4259 32 1 -0.0384 -1.3783 3.6434 33 1 -2.1039 -0.0796 3.9595 34 1 -2.2654 2.2129 3.0741 35 1 -1.1253 4.0871 2.0105 36 1 0.6585 5.0566 0.7788 37 1 0.4623 3.5623 -0.1783 38 1 2.9122 3.6449 -0.5926 39 1 3.2012 5.0210 0.4987 40 1 4.0650 3.4858 0.7543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133693245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:31 Heat of formation + Delta-G solvation = 47.543150 kcal Electronic energy + Delta-G solvation = -21113.044046 eV Core-core repulsion = 18313.888185 eV Total energy + Delta-G solvation = -2799.155862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.00727 -38.26012 -36.84604 -34.50421 -33.51535 -31.85080 -30.92867 -29.14776 -28.27952 -25.79659 -24.81223 -23.20528 -22.83395 -22.44948 -19.77360 -18.37304 -18.18984 -17.41108 -17.12191 -16.46377 -16.07882 -15.46342 -15.25757 -14.94987 -14.54821 -14.38173 -14.26232 -13.62913 -13.46226 -13.24299 -13.04891 -12.81214 -12.80608 -12.63070 -12.45508 -12.24149 -12.08811 -12.01504 -11.56469 -11.34955 -11.07264 -10.86852 -10.81642 -10.34252 -9.73349 -8.69164 -8.03729 -8.02608 -6.09042 0.69545 0.85700 1.44327 1.45604 1.52287 2.45863 2.60890 3.07282 3.25038 3.31333 4.00160 4.14239 4.19312 4.32648 4.38885 4.52869 4.59059 4.63579 4.70207 4.73419 4.76913 4.83552 4.87554 5.02781 5.13419 5.25638 5.27807 5.36277 5.39595 5.47474 5.63394 5.65545 5.73780 5.83088 5.85778 5.90119 6.06100 6.36052 6.38812 6.53590 6.96303 7.01491 7.07491 7.54017 9.02313 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.008168 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.831590 B = 3427.102668 C = 3973.580139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.238 3.762 4 H -0.016 1.016 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.011 3.989 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.499 5.499 14 C 0.041 3.959 15 C -0.092 4.092 16 C -0.165 4.165 17 C -0.100 4.100 18 C -0.183 4.183 19 C 0.147 3.853 20 N -0.750 5.750 21 C 0.098 3.902 22 C 0.078 3.922 23 H 0.078 0.922 24 C -0.126 4.126 25 H 0.086 0.914 26 H 0.012 0.988 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.257 0.743 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.411 0.589 36 H 0.106 0.894 37 H 0.030 0.970 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 3.876 9.989 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.134 3.866 4 H 0.001 0.999 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.217 5.217 14 C -0.060 4.060 15 C -0.112 4.112 16 C -0.185 4.185 17 C -0.119 4.119 18 C -0.205 4.205 19 C 0.043 3.957 20 N -0.384 5.384 21 C -0.029 4.029 22 C -0.031 4.031 23 H 0.096 0.904 24 C -0.183 4.183 25 H 0.104 0.896 26 H 0.031 0.969 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.249 0.751 36 H 0.124 0.876 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.507 3.751 9.876 12.408 hybrid contribution 0.171 0.281 -1.332 1.372 sum -6.336 4.032 8.544 11.376 Atomic orbital electron populations 1.22311 0.97315 0.99756 1.01649 1.21822 0.93942 0.99354 1.00622 1.19112 0.94961 0.90955 0.81586 0.99892 1.21419 0.93231 1.42918 0.95721 0.92127 1.25570 1.00176 0.95778 0.97136 1.70082 1.33107 1.46872 1.06122 0.85775 0.81373 0.78684 0.76792 1.20150 1.21681 1.19414 1.59053 1.37447 1.07380 1.17791 1.18536 0.88788 0.95869 1.02820 1.20987 0.99557 0.93828 0.96851 1.20987 0.93810 1.01174 1.02574 1.21087 0.98026 0.93396 0.99392 1.20736 0.97645 0.97388 1.04765 1.18268 0.92877 0.87342 0.97231 1.44643 1.30409 1.11893 1.51450 1.22130 0.88687 1.00514 0.91556 1.21944 0.94801 0.86876 0.99511 0.90402 1.21858 0.97598 0.99225 0.99643 0.89561 0.96909 0.94067 0.93303 0.92059 0.93392 0.86916 0.84618 0.83488 0.84465 0.75149 0.87553 0.95201 0.92979 0.91466 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.75 8.87 71.98 0.64 -6.11 16 2 C -0.12 -5.84 4.82 30.60 0.15 -5.70 16 3 C 0.24 11.83 1.17 44.17 0.05 11.88 16 4 H -0.02 -0.92 5.67 -2.39 -0.01 -0.93 16 5 C -0.49 -26.24 5.76 25.60 0.15 -26.09 16 6 H 0.06 3.23 6.21 -2.91 -0.02 3.21 16 7 C 0.01 0.62 5.17 84.66 0.44 1.06 16 8 N -0.92 -53.04 11.83 21.45 0.25 -52.79 16 9 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.50 -21.59 4.36 -651.21 -2.84 -24.43 16 14 C 0.04 1.58 3.36 38.32 0.13 1.71 16 15 C -0.09 -3.36 6.40 22.45 0.14 -3.21 16 16 C -0.17 -4.85 9.56 22.25 0.21 -4.64 16 17 C -0.10 -2.60 9.81 22.28 0.22 -2.38 16 18 C -0.18 -5.12 9.55 22.38 0.21 -4.90 16 19 C 0.15 4.96 5.52 38.09 0.21 5.18 16 20 N -0.75 -22.62 5.93 -336.16 -1.99 -24.61 16 21 C 0.10 3.26 6.39 86.40 0.55 3.81 16 22 C 0.08 2.92 2.95 45.15 0.13 3.05 16 23 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 24 C -0.13 -4.78 7.71 71.98 0.55 -4.23 16 25 H 0.09 3.47 2.39 -2.39 -0.01 3.47 16 26 H 0.01 0.57 8.01 -2.39 -0.02 0.55 16 27 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.05 2.72 6.32 -2.39 -0.02 2.70 16 29 H 0.06 2.88 4.64 -2.39 -0.01 2.86 16 30 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.11 4.38 6.30 -2.91 -0.02 4.36 16 32 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.41 9.58 8.89 -92.71 -0.82 8.76 16 36 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.03 1.21 6.48 -2.39 -0.02 1.20 16 38 H 0.05 2.34 6.00 -2.39 -0.01 2.32 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 2.22 6.50 -2.39 -0.02 2.21 16 Total: -1.00 -61.58 292.47 1.47 -60.11 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.23 Total: 26.84 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 3.79 Total: -30.58 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -4.58 Total: -101.83 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -61.58 1.47 -60.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133693245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.655 kcal (2) G-P(sol) polarization free energy of solvation -61.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds