Wall clock time and date at job start Mon Mar 30 2020 06:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38206 * 120.09722 * 2 1 4 4 C 1.37956 * 120.17406 * 180.26465 * 3 2 1 5 5 C 1.39081 * 120.60626 * 359.94822 * 4 3 2 6 6 C 1.39233 * 119.16459 * 359.72670 * 5 4 3 7 7 C 1.38623 * 120.13828 * 0.14697 * 6 5 4 8 8 N 1.39671 * 119.94213 * 180.02562 * 7 6 5 9 9 N 1.40041 * 110.94741 * 179.48322 * 5 4 3 10 10 C 1.46892 * 111.00366 * 256.49114 * 9 5 4 11 11 C 1.52994 * 109.47644 * 190.00262 * 10 9 5 12 12 C 1.53002 * 109.47223 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46833 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00577 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99770 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99850 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 119.99914 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47349 * 89.99987 * 17 15 13 19 19 H 1.48503 * 109.46905 * 209.99916 * 17 15 13 20 20 H 1.48493 * 109.47332 * 329.99759 * 17 15 13 21 21 C 1.47905 * 107.89434 * 18.31564 * 9 5 4 22 22 C 1.51603 * 131.47537 * 180.12596 * 4 3 2 23 23 H 1.08999 * 109.47792 * 270.23353 * 1 2 3 24 24 H 1.09007 * 109.47246 * 30.23657 * 1 2 3 25 25 H 1.09005 * 109.46944 * 150.23002 * 1 2 3 26 26 H 1.07994 * 119.91653 * 359.97438 * 3 2 1 27 27 H 1.07995 * 119.93118 * 180.12309 * 6 5 4 28 28 H 0.97001 * 120.00529 * 0.02562 * 8 7 6 29 29 H 0.97005 * 119.99745 * 179.72488 * 8 7 6 30 30 H 1.09001 * 109.47087 * 310.00099 * 10 9 5 31 31 H 1.09001 * 109.46881 * 69.99421 * 10 9 5 32 32 H 1.09001 * 109.46746 * 300.00046 * 11 10 9 33 33 H 1.08993 * 109.47534 * 59.99318 * 11 10 9 34 34 H 1.08998 * 109.46772 * 299.99428 * 12 11 10 35 35 H 1.09002 * 109.47291 * 59.99779 * 12 11 10 36 36 H 0.96997 * 120.00149 * 180.02562 * 16 15 13 37 37 H 1.08999 * 110.77386 * 91.00187 * 21 9 5 38 38 H 1.08995 * 110.77395 * 214.42265 * 21 9 5 39 39 H 1.09004 * 110.73805 * 45.44278 * 22 4 3 40 40 H 1.08996 * 110.73896 * 282.12234 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1957 0.0000 4 6 3.5795 1.1976 -0.0055 5 6 4.2892 0.0015 -0.0100 6 6 3.5899 -1.2025 -0.0031 7 6 2.2037 -1.2021 0.0050 8 7 1.5063 -2.4122 0.0124 9 7 5.6694 0.2383 -0.0270 10 6 6.2267 0.0074 -1.3663 11 6 7.7548 0.0303 -1.2938 12 6 8.3353 -0.2096 -2.6890 13 6 9.8404 -0.1864 -2.6175 14 1 10.3337 -0.0170 -1.6718 15 6 10.5878 -0.3814 -3.7597 16 7 11.9013 -0.3606 -3.6975 17 14 9.7347 -0.6737 -5.3955 18 1 9.4993 0.6279 -6.0706 19 1 10.5920 -1.5291 -6.2549 20 1 8.4347 -1.3522 -5.1616 21 6 5.8964 1.6335 0.4082 22 6 4.5821 2.3348 -0.0044 23 1 -0.3635 0.0042 1.0276 24 1 -0.3634 0.8879 -0.5175 25 1 -0.3633 -0.8921 -0.5103 26 1 1.6602 2.1311 -0.0004 27 1 4.1285 -2.1385 -0.0045 28 1 1.9919 -3.2520 0.0123 29 1 0.5363 -2.4129 0.0222 30 1 5.8951 -0.9631 -1.7355 31 1 5.8832 0.7900 -2.0427 32 1 8.0864 1.0008 -0.9246 33 1 8.0983 -0.7523 -0.6174 34 1 8.0036 -1.1800 -3.0584 35 1 7.9918 0.5734 -3.3650 36 1 12.4272 -0.4974 -4.5010 37 1 6.0389 1.6834 1.4877 38 1 6.7477 2.0682 -0.1157 39 1 4.3037 3.0940 0.7266 40 1 4.6727 2.7704 -0.9994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135490826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:26 Heat of formation + Delta-G solvation = 23.909331 kcal Electronic energy + Delta-G solvation = -18957.568488 eV Core-core repulsion = 16157.387786 eV Total energy + Delta-G solvation = -2800.180701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69905 -37.98767 -34.65332 -33.48953 -32.10673 -31.70734 -30.49845 -27.79254 -26.96377 -25.66452 -23.15230 -22.56048 -20.87932 -20.24129 -19.68723 -17.30428 -16.93636 -16.61317 -15.61409 -15.35795 -14.73277 -14.27317 -14.16581 -14.00159 -13.70668 -13.42386 -13.25281 -12.64644 -12.58942 -12.28417 -12.19144 -11.96785 -11.76116 -11.49095 -11.15818 -10.97743 -10.90971 -10.70260 -10.37531 -9.93182 -9.72405 -9.60874 -9.17783 -8.98868 -8.51290 -7.96916 -7.29994 -6.01764 -3.99460 1.42241 1.61355 3.32272 3.39626 3.43859 3.60638 3.76114 4.08804 4.47503 4.66525 4.90632 4.92249 5.09500 5.17842 5.23998 5.32171 5.44028 5.46540 5.57136 5.67969 5.72902 5.76580 5.83443 5.86106 5.95076 6.13040 6.14486 6.30310 6.49079 6.50037 6.55385 6.65772 6.73746 6.93106 7.19738 7.30066 7.37001 7.47096 7.53582 7.65414 7.82608 8.57390 9.03862 9.60901 11.11815 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.028702 B = 0.004074 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.319725 B = 6870.647370 C = 7296.923910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.187 4.187 3 C -0.043 4.043 4 C -0.195 4.195 5 C 0.144 3.856 6 C -0.190 4.190 7 C 0.231 3.769 8 N -0.879 5.879 9 N -0.495 5.495 10 C 0.059 3.941 11 C -0.098 4.098 12 C -0.013 4.013 13 C -0.518 4.518 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.047 3.953 22 C -0.102 4.102 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.397 0.603 29 H 0.396 0.604 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.630 1.113 8.046 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.192 4.192 3 C -0.062 4.062 4 C -0.200 4.200 5 C 0.047 3.953 6 C -0.214 4.214 7 C 0.126 3.874 8 N -0.419 5.419 9 N -0.211 5.211 10 C -0.066 4.066 11 C -0.136 4.136 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.080 4.080 22 C -0.140 4.140 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.225 0.775 29 H 0.225 0.775 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.105 0.777 8.249 24.546 hybrid contribution -0.785 -0.018 -1.403 1.607 sum -23.890 0.760 6.847 24.864 Atomic orbital electron populations 1.20492 0.91511 1.01967 1.01445 1.19128 0.95375 0.91508 1.13210 1.19938 0.92078 0.96740 0.97443 1.20784 0.93948 0.95390 1.09845 1.19322 0.88749 0.92956 0.94298 1.19760 0.91327 0.97078 1.13285 1.17176 0.90433 0.86056 0.93706 1.42486 1.08802 1.05073 1.85562 1.60153 1.09756 1.24419 1.26762 1.22420 0.97409 1.00892 0.85841 1.21527 0.90400 1.01669 0.99994 1.19550 0.96984 0.96145 0.92408 1.21141 0.89245 1.48871 0.96343 0.90970 1.25036 0.94705 0.94769 0.99043 1.69917 1.04748 1.50703 1.29015 0.86778 0.79969 0.78536 0.84012 1.20337 1.21399 1.19040 1.23207 0.97269 0.85883 1.01642 1.21564 0.93807 0.96549 1.02058 0.92080 0.91814 0.92549 0.86586 0.86035 0.77486 0.77454 0.91018 0.94409 0.92641 0.91850 0.96622 0.97223 0.92778 0.89707 0.88989 0.90343 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.57 36.00 0.34 -0.44 16 2 C -0.19 -2.12 5.90 -104.38 -0.62 -2.74 16 3 C -0.04 -0.52 9.69 -39.70 -0.38 -0.90 16 4 C -0.20 -2.69 6.23 -103.97 -0.65 -3.34 16 5 C 0.14 2.19 5.53 -83.42 -0.46 1.73 16 6 C -0.19 -2.64 9.91 -39.07 -0.39 -3.03 16 7 C 0.23 2.74 6.72 -83.88 -0.56 2.17 16 8 N -0.88 -7.43 8.98 32.36 0.29 -7.14 16 9 N -0.49 -7.95 5.04 -169.06 -0.85 -8.80 16 10 C 0.06 1.03 4.75 -3.83 -0.02 1.01 16 11 C -0.10 -1.99 5.19 -26.73 -0.14 -2.13 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 13 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 14 H 0.07 2.24 7.99 -52.48 -0.42 1.83 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 17 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 21 C 0.05 0.65 6.72 -2.44 -0.02 0.63 16 22 C -0.10 -1.26 6.92 -26.61 -0.18 -1.45 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 25 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 26 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 28 H 0.40 2.84 8.84 -40.82 -0.36 2.48 16 29 H 0.40 2.56 6.83 -40.82 -0.28 2.28 16 30 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 31 H 0.04 0.65 8.03 -51.93 -0.42 0.24 16 32 H 0.05 1.11 6.59 -51.93 -0.34 0.76 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 35 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.29 6.26 -51.93 -0.33 0.96 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -32.29 319.64 -9.47 -41.76 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.22 Total: 1.89 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -3.62 Total: -22.40 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.21 Total: -43.44 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.29 -9.47 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135490826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.668 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds