Wall clock time and date at job start Mon Mar 30 2020 06:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38206 * 120.09722 * 2 1 4 4 C 1.37956 * 120.17406 * 180.26465 * 3 2 1 5 5 C 1.39081 * 120.60626 * 359.94822 * 4 3 2 6 6 C 1.39233 * 119.16459 * 359.72670 * 5 4 3 7 7 C 1.38623 * 120.13828 * 0.14697 * 6 5 4 8 8 N 1.39671 * 119.94213 * 180.02562 * 7 6 5 9 9 N 1.40041 * 110.94741 * 179.48322 * 5 4 3 10 10 C 1.46892 * 111.00366 * 256.49114 * 9 5 4 11 11 C 1.52994 * 109.47644 * 190.00262 * 10 9 5 12 12 C 1.53002 * 109.47223 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46833 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00577 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99770 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99850 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 119.99914 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47349 * 89.99987 * 17 15 13 19 19 H 1.48503 * 109.46905 * 209.99916 * 17 15 13 20 20 H 1.48493 * 109.47332 * 329.99759 * 17 15 13 21 21 C 1.47905 * 107.89434 * 18.31564 * 9 5 4 22 22 C 1.51603 * 131.47537 * 180.12596 * 4 3 2 23 23 H 1.08999 * 109.47792 * 270.23353 * 1 2 3 24 24 H 1.09007 * 109.47246 * 30.23657 * 1 2 3 25 25 H 1.09005 * 109.46944 * 150.23002 * 1 2 3 26 26 H 1.07994 * 119.91653 * 359.97438 * 3 2 1 27 27 H 1.07995 * 119.93118 * 180.12309 * 6 5 4 28 28 H 0.97001 * 120.00529 * 0.02562 * 8 7 6 29 29 H 0.97005 * 119.99745 * 179.72488 * 8 7 6 30 30 H 1.09001 * 109.47087 * 310.00099 * 10 9 5 31 31 H 1.09001 * 109.46881 * 69.99421 * 10 9 5 32 32 H 1.09001 * 109.46746 * 300.00046 * 11 10 9 33 33 H 1.08993 * 109.47534 * 59.99318 * 11 10 9 34 34 H 1.08998 * 109.46772 * 299.99428 * 12 11 10 35 35 H 1.09002 * 109.47291 * 59.99779 * 12 11 10 36 36 H 0.96997 * 120.00149 * 180.02562 * 16 15 13 37 37 H 1.08999 * 110.77386 * 91.00187 * 21 9 5 38 38 H 1.08995 * 110.77395 * 214.42265 * 21 9 5 39 39 H 1.09004 * 110.73805 * 45.44278 * 22 4 3 40 40 H 1.08996 * 110.73896 * 282.12234 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1957 0.0000 4 6 3.5795 1.1976 -0.0055 5 6 4.2892 0.0015 -0.0100 6 6 3.5899 -1.2025 -0.0031 7 6 2.2037 -1.2021 0.0050 8 7 1.5063 -2.4122 0.0124 9 7 5.6694 0.2383 -0.0270 10 6 6.2267 0.0074 -1.3663 11 6 7.7548 0.0303 -1.2938 12 6 8.3353 -0.2096 -2.6890 13 6 9.8404 -0.1864 -2.6175 14 1 10.3337 -0.0170 -1.6718 15 6 10.5878 -0.3814 -3.7597 16 7 11.9013 -0.3606 -3.6975 17 14 9.7347 -0.6737 -5.3955 18 1 9.4993 0.6279 -6.0706 19 1 10.5920 -1.5291 -6.2549 20 1 8.4347 -1.3522 -5.1616 21 6 5.8964 1.6335 0.4082 22 6 4.5821 2.3348 -0.0044 23 1 -0.3635 0.0042 1.0276 24 1 -0.3634 0.8879 -0.5175 25 1 -0.3633 -0.8921 -0.5103 26 1 1.6602 2.1311 -0.0004 27 1 4.1285 -2.1385 -0.0045 28 1 1.9919 -3.2520 0.0123 29 1 0.5363 -2.4129 0.0222 30 1 5.8951 -0.9631 -1.7355 31 1 5.8832 0.7900 -2.0427 32 1 8.0864 1.0008 -0.9246 33 1 8.0983 -0.7523 -0.6174 34 1 8.0036 -1.1800 -3.0584 35 1 7.9918 0.5734 -3.3650 36 1 12.4272 -0.4974 -4.5010 37 1 6.0389 1.6834 1.4877 38 1 6.7477 2.0682 -0.1157 39 1 4.3037 3.0940 0.7266 40 1 4.6727 2.7704 -0.9994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135490826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:26 Heat of formation + Delta-G solvation = 3.240261 kcal Electronic energy + Delta-G solvation = -18958.464766 eV Core-core repulsion = 16157.387786 eV Total energy + Delta-G solvation = -2801.076979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72087 -38.96707 -36.21811 -34.82371 -33.77183 -32.65848 -31.79994 -29.07663 -28.19951 -26.74419 -24.69849 -23.59559 -22.35630 -21.26037 -21.09265 -18.90999 -18.14084 -17.84776 -16.75151 -16.52098 -16.16341 -15.60091 -15.53835 -15.12333 -14.73948 -14.57655 -14.50916 -14.22757 -13.77239 -13.61729 -13.30430 -13.05507 -12.94082 -12.76575 -12.54871 -12.34954 -12.16637 -11.90298 -11.79953 -11.73780 -11.48102 -11.31995 -11.08832 -10.76665 -10.07284 -9.01053 -8.29750 -8.18863 -6.34056 0.44635 0.67049 1.35253 1.37345 1.49658 2.36015 2.63387 2.84806 3.05325 3.18686 3.71979 3.89272 4.07277 4.10303 4.15136 4.25123 4.31008 4.47489 4.57965 4.64132 4.68448 4.82538 4.82958 4.87968 4.88879 4.94788 4.99569 5.05547 5.10879 5.26686 5.35518 5.49103 5.55346 5.61021 5.64309 5.66190 5.79959 6.06252 6.28816 6.34041 6.63309 6.73862 7.02566 7.30444 8.87287 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.028702 B = 0.004074 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.319725 B = 6870.647370 C = 7296.923910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.187 4.187 3 C -0.048 4.048 4 C -0.208 4.208 5 C 0.114 3.886 6 C -0.208 4.208 7 C 0.228 3.772 8 N -0.866 5.866 9 N -0.508 5.508 10 C 0.074 3.926 11 C -0.087 4.087 12 C -0.009 4.009 13 C -0.533 4.533 14 H 0.031 0.969 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.952 3.048 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.248 1.248 21 C 0.042 3.958 22 C -0.094 4.094 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.139 0.861 27 H 0.116 0.884 28 H 0.404 0.596 29 H 0.408 0.592 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.267 0.733 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.094 1.276 7.319 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.192 4.192 3 C -0.067 4.067 4 C -0.213 4.213 5 C 0.017 3.983 6 C -0.233 4.233 7 C 0.122 3.878 8 N -0.407 5.407 9 N -0.225 5.225 10 C -0.051 4.051 11 C -0.125 4.125 12 C -0.047 4.047 13 C -0.571 4.571 14 H 0.049 0.951 15 C -0.193 4.193 16 N -0.593 5.593 17 Si 0.775 3.225 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.172 1.172 21 C -0.084 4.084 22 C -0.132 4.132 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.157 0.843 27 H 0.134 0.866 28 H 0.233 0.767 29 H 0.240 0.760 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.612 0.924 7.546 27.676 hybrid contribution 0.274 -0.097 -1.060 1.099 sum -26.338 0.827 6.487 27.137 Atomic orbital electron populations 1.20568 0.88967 1.03229 1.02566 1.19570 0.97239 0.90974 1.11441 1.20267 0.91575 0.98102 0.96726 1.20986 0.94848 0.95091 1.10370 1.19469 0.88223 0.94106 0.96520 1.19899 0.92441 0.96649 1.14313 1.17290 0.89918 0.87487 0.93127 1.42461 1.09450 1.04400 1.84439 1.60094 1.10976 1.25795 1.25611 1.22100 0.94909 1.00836 0.87270 1.21319 0.92705 1.01015 0.97421 1.19477 0.93844 0.96477 0.94864 1.21478 0.91953 1.48691 0.94935 0.95071 1.26040 0.95351 0.94358 1.03593 1.70072 1.06668 1.52046 1.30495 0.85628 0.79331 0.79139 0.78386 1.18949 1.20820 1.17165 1.23272 0.98013 0.85199 1.01962 1.21524 0.92542 0.96576 1.02589 0.90894 0.90747 0.91202 0.84347 0.86581 0.76717 0.76050 0.91338 0.94150 0.92763 0.93309 0.96315 0.96221 0.92448 0.89012 0.89691 0.88245 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 9.57 71.23 0.68 -0.52 16 2 C -0.19 -3.73 5.90 -19.71 -0.12 -3.85 16 3 C -0.05 -1.03 9.69 22.20 0.21 -0.82 16 4 C -0.21 -5.43 6.23 -19.44 -0.12 -5.55 16 5 C 0.11 3.39 5.53 38.27 0.21 3.60 16 6 C -0.21 -5.66 9.91 22.60 0.22 -5.44 16 7 C 0.23 4.98 6.72 38.15 0.26 5.23 16 8 N -0.87 -12.60 8.98 -51.52 -0.46 -13.06 16 9 N -0.51 -16.32 5.04 -688.77 -3.47 -19.79 16 10 C 0.07 2.58 4.75 86.30 0.41 2.99 16 11 C -0.09 -3.58 5.19 30.59 0.16 -3.42 16 12 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 13 C -0.53 -31.72 9.66 25.60 0.25 -31.47 16 14 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 15 C 0.00 0.19 5.47 84.66 0.46 0.65 16 16 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 17 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 21 C 0.04 1.15 6.72 86.65 0.58 1.74 16 22 C -0.09 -2.21 6.92 30.68 0.21 -2.00 16 23 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.80 8.09 -2.38 -0.02 0.78 16 25 H 0.07 0.68 6.56 -2.38 -0.02 0.66 16 26 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 27 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.40 4.99 8.84 -92.71 -0.82 4.18 16 29 H 0.41 4.02 6.83 -92.70 -0.63 3.38 16 30 H 0.07 2.40 8.06 -2.39 -0.02 2.38 16 31 H 0.04 1.37 8.03 -2.39 -0.02 1.35 16 32 H 0.05 2.22 6.59 -2.39 -0.02 2.21 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 35 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 36 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.08 2.40 6.26 -2.39 -0.01 2.38 16 39 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -70.61 319.64 1.33 -69.28 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.46 Total: 16.37 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 3.54 Total: -39.15 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -3.63 Total: -93.52 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -70.61 1.33 -69.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135490826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.524 kcal (2) G-P(sol) polarization free energy of solvation -70.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds