Wall clock time and date at job start Mon Mar 30 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99633 * 2 1 4 4 H 1.48495 * 109.47330 * 239.99910 * 3 2 1 5 5 H 1.48502 * 109.47430 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47128 * 120.00228 * 3 2 1 7 7 C 1.37875 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99612 * 170.51618 * 7 2 1 9 9 C 1.50702 * 120.00125 * 350.50698 * 7 2 1 10 10 C 1.52999 * 115.55081 * 324.79851 * 9 7 2 11 11 N 1.46494 * 109.47192 * 186.25282 * 10 9 7 12 12 C 1.36654 * 125.60157 * 88.61174 * 11 10 9 13 13 C 1.33973 * 108.05507 * 179.76176 * 12 11 10 14 14 C 1.41454 * 107.54456 * 0.10834 * 13 12 11 15 15 C 1.33972 * 107.54795 * 0.19052 * 14 13 12 16 16 C 1.50801 * 123.50658 * 180.37016 * 14 13 12 17 17 H 1.09000 * 109.73153 * 256.77720 * 16 14 13 18 18 N 1.46901 * 109.73297 * 136.09396 * 16 14 13 19 19 C 1.53418 * 108.11683 * 16.43467 * 16 14 13 20 20 C 1.53006 * 109.81467 * 309.36565 * 19 16 14 21 21 C 1.50803 * 128.94781 * 179.97438 * 13 12 11 22 22 C 1.53000 * 117.49378 * 110.46511 * 9 7 2 23 23 C 1.52995 * 117.49748 * 179.12557 * 9 7 2 24 24 H 0.96995 * 119.99663 * 5.00708 * 1 2 3 25 25 H 1.08999 * 109.47231 * 66.24871 * 10 9 7 26 26 H 1.09003 * 109.47216 * 306.25574 * 10 9 7 27 27 H 1.08005 * 125.97526 * 0.02562 * 12 11 10 28 28 H 1.08004 * 125.97648 * 179.84669 * 15 14 13 29 29 H 1.00893 * 111.00234 * 179.97438 * 18 16 14 30 30 H 1.00902 * 110.99541 * 303.95416 * 18 16 14 31 31 H 1.09010 * 109.41119 * 69.46721 * 19 16 14 32 32 H 1.08998 * 109.41818 * 189.32456 * 19 16 14 33 33 H 1.09006 * 109.40989 * 192.07676 * 20 19 16 34 34 H 1.08997 * 109.40958 * 311.93025 * 20 19 16 35 35 H 1.08997 * 109.73206 * 316.28081 * 21 13 12 36 36 H 1.08996 * 109.73146 * 76.97536 * 21 13 12 37 37 H 1.09006 * 117.49232 * 215.00121 * 22 9 7 38 38 H 1.08992 * 117.50078 * 0.02562 * 22 9 7 39 39 H 1.09002 * 117.50349 * 359.97438 * 23 9 7 40 40 H 1.09002 * 117.49751 * 144.97557 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0735 -1.2002 -0.1546 9 6 1.2667 -2.4903 0.2141 10 6 0.0870 -2.4250 1.1863 11 7 -0.4365 -3.7747 1.4103 12 6 -0.0048 -4.6462 2.3703 13 6 -0.7251 -5.7708 2.2643 14 6 -1.6372 -5.5941 1.1977 15 6 -1.4349 -4.3701 0.6918 16 6 -2.6322 -6.6437 0.7707 17 1 -2.2829 -7.1337 -0.1382 18 7 -3.9390 -6.0184 0.5270 19 6 -2.7535 -7.6740 1.9009 20 6 -1.3612 -8.1497 2.3208 21 6 -0.6391 -7.0325 3.0858 22 6 1.1473 -3.4411 -0.9787 23 6 2.0849 -3.7827 0.1821 24 1 -0.4849 0.8368 -0.0733 25 1 -0.6972 -1.7965 0.7642 26 1 0.4203 -2.0025 2.1342 27 1 0.7773 -4.4593 3.0914 28 1 -1.9704 -3.9293 -0.1361 29 1 -4.6202 -6.7047 0.2393 30 1 -4.2556 -5.5134 1.3412 31 1 -3.2533 -7.2173 2.7553 32 1 -3.3370 -8.5265 1.5531 33 1 -1.4559 -9.0255 2.9627 34 1 -0.7850 -8.4115 1.4333 35 1 0.4058 -7.3045 3.2344 36 1 -1.1204 -6.8766 4.0513 37 1 0.2283 -4.0200 -1.0707 38 1 1.6029 -3.1291 -1.9184 39 1 3.1570 -3.6954 0.0054 40 1 1.7831 -4.5862 0.8539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135501461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:53 Heat of formation + Delta-G solvation = 63.236603 kcal Electronic energy + Delta-G solvation = -19890.049448 eV Core-core repulsion = 17091.574105 eV Total energy + Delta-G solvation = -2798.475343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90495 -37.38293 -35.84337 -33.31617 -32.29134 -30.57682 -28.75988 -26.61856 -26.18251 -25.19458 -22.05722 -21.48471 -20.89771 -19.49809 -18.95285 -17.99756 -16.55039 -16.02238 -15.36876 -14.79238 -14.50594 -14.31325 -14.05085 -13.50617 -13.26187 -13.04789 -12.47068 -12.38038 -12.09861 -11.79345 -11.69494 -11.45560 -11.19911 -11.03974 -10.92939 -10.77293 -10.61148 -10.45345 -10.25173 -10.17397 -9.58026 -9.17121 -8.83349 -8.44506 -8.16264 -7.50402 -7.32217 -6.21824 -4.24683 3.12208 3.20624 3.26467 3.29073 3.51054 3.95518 4.26227 4.80209 4.87683 5.03513 5.07785 5.28218 5.48453 5.61140 5.69428 5.81014 5.84647 5.93440 5.97494 6.07531 6.09902 6.13850 6.24936 6.29137 6.34653 6.41725 6.51719 6.73445 6.76017 6.89165 6.90301 7.05475 7.14070 7.36125 7.38054 7.44831 7.67779 7.74386 7.77035 8.14770 8.15479 8.38636 8.72984 9.35499 10.81482 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035241 B = 0.005165 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.346683 B = 5419.465889 C = 5703.905708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.487 4.487 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.137 3.863 11 N -0.432 5.432 12 C -0.006 4.006 13 C -0.185 4.185 14 C -0.191 4.191 15 C 0.036 3.964 16 C 0.171 3.829 17 H 0.075 0.925 18 N -0.841 5.841 19 C -0.144 4.144 20 C -0.108 4.108 21 C -0.039 4.039 22 C -0.199 4.199 23 C -0.210 4.210 24 H 0.267 0.733 25 H 0.132 0.868 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.332 0.668 30 H 0.340 0.660 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.116 -11.345 4.579 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.036 3.964 10 C 0.018 3.982 11 N -0.105 5.105 12 C -0.137 4.137 13 C -0.192 4.192 14 C -0.197 4.197 15 C -0.097 4.097 16 C 0.060 3.940 17 H 0.093 0.907 18 N -0.368 5.368 19 C -0.184 4.184 20 C -0.146 4.146 21 C -0.077 4.077 22 C -0.237 4.237 23 C -0.248 4.248 24 H 0.077 0.923 25 H 0.150 0.850 26 H 0.087 0.913 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.144 0.856 30 H 0.152 0.848 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.768 -10.381 4.005 12.105 hybrid contribution 0.269 0.235 0.637 0.730 sum -4.499 -10.146 4.642 12.030 Atomic orbital electron populations 1.69688 1.06021 1.27428 1.49456 1.25023 0.94960 0.99449 0.94043 0.86485 0.79555 0.82199 0.78872 1.20101 1.21037 1.19981 1.20508 0.93854 0.88707 1.49416 0.91766 1.19302 0.93743 0.89371 0.93992 1.21967 0.99356 0.77510 0.99402 1.44871 1.27146 1.14087 1.24360 1.21133 1.03416 0.91102 0.98075 1.19118 1.02186 0.96072 1.01837 1.18903 1.02952 0.96119 1.01765 1.21200 0.94705 0.94046 0.99743 1.19703 0.87737 0.91023 0.95572 0.90667 1.58884 1.04536 1.31549 1.41866 1.22363 0.97485 0.98894 0.99618 1.21426 0.95916 0.97260 0.99989 1.19904 0.99435 0.91752 0.96606 1.22987 0.99902 1.06816 0.94007 1.23003 0.96451 1.01892 1.03411 0.92272 0.85015 0.91261 0.83477 0.82828 0.85600 0.84750 0.92308 0.92915 0.92794 0.91987 0.92177 0.92485 0.91098 0.90822 0.91097 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.50 10.71 55.43 0.59 -22.91 16 2 C 0.07 1.76 5.27 -17.82 -0.09 1.67 16 3 Si 0.90 20.23 29.55 -169.99 -5.02 15.20 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.49 -12.87 9.05 -34.44 -0.31 -13.18 16 8 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 9 C 0.04 0.90 2.38 -155.66 -0.37 0.53 16 10 C 0.14 3.14 5.35 -4.05 -0.02 3.12 16 11 N -0.43 -8.73 1.95 -117.43 -0.23 -8.96 16 12 C -0.01 -0.11 9.37 -16.90 -0.16 -0.27 16 13 C -0.18 -3.14 5.92 -104.85 -0.62 -3.76 16 14 C -0.19 -3.28 5.53 -104.85 -0.58 -3.86 16 15 C 0.04 0.70 9.46 -16.90 -0.16 0.54 16 16 C 0.17 2.41 3.61 -68.60 -0.25 2.17 16 17 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 18 N -0.84 -10.72 9.15 -5.42 -0.05 -10.77 16 19 C -0.14 -1.72 5.45 -26.51 -0.14 -1.86 16 20 C -0.11 -1.30 5.86 -26.50 -0.16 -1.46 16 21 C -0.04 -0.54 6.30 -27.60 -0.17 -0.71 16 22 C -0.20 -4.65 9.64 -26.69 -0.26 -4.91 16 23 C -0.21 -4.70 9.57 -26.69 -0.26 -4.96 16 24 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 25 H 0.13 3.29 6.01 -51.93 -0.31 2.98 16 26 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 27 H 0.15 2.52 8.06 -52.48 -0.42 2.10 16 28 H 0.15 3.03 8.06 -52.48 -0.42 2.61 16 29 H 0.33 3.40 9.05 -39.30 -0.36 3.05 16 30 H 0.34 4.27 8.98 -39.29 -0.35 3.92 16 31 H 0.06 0.72 8.10 -51.92 -0.42 0.30 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.62 6.24 -51.93 -0.32 1.30 16 38 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.08 1.67 5.76 -51.93 -0.30 1.37 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -26.35 315.07 -9.77 -36.12 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -6.26 Total: 13.53 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -3.55 Total: -26.96 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.32 Total: -42.63 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.35 -9.77 -36.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135501461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.352 kcal (2) G-P(sol) polarization free energy of solvation -26.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds