Wall clock time and date at job start Mon Mar 30 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99633 * 2 1 4 4 H 1.48495 * 109.47330 * 239.99910 * 3 2 1 5 5 H 1.48502 * 109.47430 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47128 * 120.00228 * 3 2 1 7 7 C 1.37875 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99612 * 170.51618 * 7 2 1 9 9 C 1.50702 * 120.00125 * 350.50698 * 7 2 1 10 10 C 1.52999 * 115.55081 * 324.79851 * 9 7 2 11 11 N 1.46494 * 109.47192 * 186.25282 * 10 9 7 12 12 C 1.36654 * 125.60157 * 88.61174 * 11 10 9 13 13 C 1.33973 * 108.05507 * 179.76176 * 12 11 10 14 14 C 1.41454 * 107.54456 * 0.10834 * 13 12 11 15 15 C 1.33972 * 107.54795 * 0.19052 * 14 13 12 16 16 C 1.50801 * 123.50658 * 180.37016 * 14 13 12 17 17 H 1.09000 * 109.73153 * 256.77720 * 16 14 13 18 18 N 1.46901 * 109.73297 * 136.09396 * 16 14 13 19 19 C 1.53418 * 108.11683 * 16.43467 * 16 14 13 20 20 C 1.53006 * 109.81467 * 309.36565 * 19 16 14 21 21 C 1.50803 * 128.94781 * 179.97438 * 13 12 11 22 22 C 1.53000 * 117.49378 * 110.46511 * 9 7 2 23 23 C 1.52995 * 117.49748 * 179.12557 * 9 7 2 24 24 H 0.96995 * 119.99663 * 5.00708 * 1 2 3 25 25 H 1.08999 * 109.47231 * 66.24871 * 10 9 7 26 26 H 1.09003 * 109.47216 * 306.25574 * 10 9 7 27 27 H 1.08005 * 125.97526 * 0.02562 * 12 11 10 28 28 H 1.08004 * 125.97648 * 179.84669 * 15 14 13 29 29 H 1.00893 * 111.00234 * 179.97438 * 18 16 14 30 30 H 1.00902 * 110.99541 * 303.95416 * 18 16 14 31 31 H 1.09010 * 109.41119 * 69.46721 * 19 16 14 32 32 H 1.08998 * 109.41818 * 189.32456 * 19 16 14 33 33 H 1.09006 * 109.40989 * 192.07676 * 20 19 16 34 34 H 1.08997 * 109.40958 * 311.93025 * 20 19 16 35 35 H 1.08997 * 109.73206 * 316.28081 * 21 13 12 36 36 H 1.08996 * 109.73146 * 76.97536 * 21 13 12 37 37 H 1.09006 * 117.49232 * 215.00121 * 22 9 7 38 38 H 1.08992 * 117.50078 * 0.02562 * 22 9 7 39 39 H 1.09002 * 117.50349 * 359.97438 * 23 9 7 40 40 H 1.09002 * 117.49751 * 144.97557 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0735 -1.2002 -0.1546 9 6 1.2667 -2.4903 0.2141 10 6 0.0870 -2.4250 1.1863 11 7 -0.4365 -3.7747 1.4103 12 6 -0.0048 -4.6462 2.3703 13 6 -0.7251 -5.7708 2.2643 14 6 -1.6372 -5.5941 1.1977 15 6 -1.4349 -4.3701 0.6918 16 6 -2.6322 -6.6437 0.7707 17 1 -2.2829 -7.1337 -0.1382 18 7 -3.9390 -6.0184 0.5270 19 6 -2.7535 -7.6740 1.9009 20 6 -1.3612 -8.1497 2.3208 21 6 -0.6391 -7.0325 3.0858 22 6 1.1473 -3.4411 -0.9787 23 6 2.0849 -3.7827 0.1821 24 1 -0.4849 0.8368 -0.0733 25 1 -0.6972 -1.7965 0.7642 26 1 0.4203 -2.0025 2.1342 27 1 0.7773 -4.4593 3.0914 28 1 -1.9704 -3.9293 -0.1361 29 1 -4.6202 -6.7047 0.2393 30 1 -4.2556 -5.5134 1.3412 31 1 -3.2533 -7.2173 2.7553 32 1 -3.3370 -8.5265 1.5531 33 1 -1.4559 -9.0255 2.9627 34 1 -0.7850 -8.4115 1.4333 35 1 0.4058 -7.3045 3.2344 36 1 -1.1204 -6.8766 4.0513 37 1 0.2283 -4.0200 -1.0707 38 1 1.6029 -3.1291 -1.9184 39 1 3.1570 -3.6954 0.0054 40 1 1.7831 -4.5862 0.8539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135501461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:53 Heat of formation + Delta-G solvation = 50.330840 kcal Electronic energy + Delta-G solvation = -19890.609084 eV Core-core repulsion = 17091.574105 eV Total energy + Delta-G solvation = -2799.034978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.34982 -38.87403 -37.32603 -34.42110 -34.27051 -32.06189 -30.01072 -28.17836 -27.69522 -26.86969 -23.36859 -23.10234 -22.24274 -21.04267 -20.66676 -19.24413 -18.45421 -17.45068 -16.80488 -16.43934 -16.15907 -15.59421 -15.21743 -14.79116 -14.71707 -14.43539 -14.02833 -13.74669 -13.66674 -13.37680 -13.08456 -12.85711 -12.80747 -12.73046 -12.51431 -12.34349 -12.12083 -11.91138 -11.62353 -11.44802 -11.25405 -11.09815 -10.73014 -10.09076 -9.44461 -8.96018 -8.77182 -8.18964 -6.29854 1.41256 1.43708 1.51476 1.63163 2.15365 2.32481 2.44223 2.91455 3.56012 3.78044 4.02779 4.09257 4.21111 4.23251 4.35032 4.39027 4.44032 4.53292 4.61972 4.68084 4.80919 4.87624 4.89792 4.94495 4.98427 5.06430 5.16276 5.17931 5.21106 5.30066 5.45579 5.49731 5.53738 5.56930 5.71905 5.80474 6.25179 6.35003 6.37980 6.63414 6.67585 6.78159 6.82682 7.33123 8.82443 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.035241 B = 0.005165 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.346683 B = 5419.465889 C = 5703.905708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.015 3.985 10 C 0.156 3.844 11 N -0.442 5.442 12 C -0.026 4.026 13 C -0.180 4.180 14 C -0.181 4.181 15 C 0.008 3.992 16 C 0.171 3.829 17 H 0.071 0.929 18 N -0.848 5.848 19 C -0.137 4.137 20 C -0.106 4.106 21 C -0.040 4.040 22 C -0.199 4.199 23 C -0.189 4.189 24 H 0.268 0.732 25 H 0.107 0.893 26 H 0.058 0.942 27 H 0.157 0.843 28 H 0.140 0.860 29 H 0.348 0.652 30 H 0.341 0.659 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 -12.950 5.446 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.014 3.986 10 C 0.035 3.965 11 N -0.115 5.115 12 C -0.156 4.156 13 C -0.187 4.187 14 C -0.188 4.188 15 C -0.124 4.124 16 C 0.059 3.941 17 H 0.089 0.911 18 N -0.377 5.377 19 C -0.176 4.176 20 C -0.145 4.145 21 C -0.078 4.078 22 C -0.237 4.237 23 C -0.227 4.227 24 H 0.078 0.922 25 H 0.125 0.875 26 H 0.076 0.924 27 H 0.175 0.825 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.993 -12.019 4.872 13.897 hybrid contribution 0.297 0.681 0.354 0.823 sum -4.696 -11.338 5.225 13.338 Atomic orbital electron populations 1.69830 1.07053 1.28071 1.49573 1.25707 0.95708 1.02271 0.93535 0.85544 0.78395 0.78484 0.78877 1.19917 1.20560 1.19436 1.20750 0.93784 0.90178 1.50378 0.92517 1.19417 0.94824 0.89444 0.94901 1.21425 0.97999 0.78878 0.98158 1.44673 1.27950 1.13403 1.25509 1.21490 1.04382 0.91487 0.98222 1.19576 1.00842 0.96730 1.01550 1.19330 1.02982 0.95650 1.00863 1.21238 0.95487 0.95238 1.00409 1.19724 0.87509 0.90557 0.96320 0.91111 1.58786 1.04558 1.32294 1.42107 1.22294 0.97879 0.98867 0.98565 1.21443 0.95482 0.97506 1.00027 1.20029 1.00556 0.90480 0.96714 1.22901 1.00305 1.06770 0.93683 1.22946 0.96270 1.00955 1.02489 0.92239 0.87504 0.92369 0.82547 0.84200 0.83771 0.84600 0.92324 0.90546 0.90149 0.92640 0.91287 0.91284 0.90944 0.91650 0.90764 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.03 10.71 21.45 0.23 -48.80 16 2 C 0.03 1.49 5.27 84.65 0.45 1.94 16 3 Si 0.96 41.69 29.55 68.60 2.03 43.71 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.51 -27.60 9.05 25.60 0.23 -27.37 16 8 H 0.06 3.05 7.83 -2.91 -0.02 3.02 16 9 C 0.02 0.75 2.38 -52.93 -0.13 0.63 16 10 C 0.16 7.39 5.35 86.38 0.46 7.86 16 11 N -0.44 -18.13 1.95 -525.45 -1.02 -19.16 16 12 C -0.03 -0.95 9.37 82.97 0.78 -0.17 16 13 C -0.18 -5.83 5.92 -20.01 -0.12 -5.95 16 14 C -0.18 -6.08 5.53 -20.01 -0.11 -6.19 16 15 C 0.01 0.31 9.46 82.97 0.78 1.09 16 16 C 0.17 4.49 3.61 44.34 0.16 4.65 16 17 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 18 N -0.85 -20.35 9.15 -171.08 -1.57 -21.92 16 19 C -0.14 -2.80 5.45 30.74 0.17 -2.64 16 20 C -0.11 -2.19 5.86 30.75 0.18 -2.01 16 21 C -0.04 -0.98 6.30 30.03 0.19 -0.79 16 22 C -0.20 -9.42 9.64 30.62 0.30 -9.13 16 23 C -0.19 -8.46 9.57 30.62 0.29 -8.17 16 24 H 0.27 13.80 8.32 -92.71 -0.77 13.03 16 25 H 0.11 5.58 6.01 -2.39 -0.01 5.57 16 26 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 27 H 0.16 5.27 8.06 -2.91 -0.02 5.24 16 28 H 0.14 5.77 8.06 -2.91 -0.02 5.75 16 29 H 0.35 6.39 9.05 -89.70 -0.81 5.58 16 30 H 0.34 8.12 8.98 -89.69 -0.81 7.32 16 31 H 0.06 1.23 8.10 -2.38 -0.02 1.21 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 3.38 6.24 -2.38 -0.01 3.36 16 38 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.09 3.72 5.76 -2.39 -0.01 3.70 16 Total: -1.00 -56.32 315.07 2.73 -53.59 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.57 Total: 38.82 kcal Atomic # 6 Polarization: -49.89 SS G_CDS: 3.63 Total: -46.26 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -2.36 Total: -89.87 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -56.32 2.73 -53.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135501461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.921 kcal (2) G-P(sol) polarization free energy of solvation -56.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds