Wall clock time and date at job start Mon Mar 30 2020 07:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47025 * 2 1 4 4 C 1.38675 * 120.41580 * 264.97743 * 3 2 1 5 5 C 1.38627 * 118.41629 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.16346 * 0.02562 * 5 4 3 7 7 N 1.31851 * 120.76327 * 359.97438 * 6 5 4 8 8 C 1.31882 * 121.72966 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.61961 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47400 * 89.99828 * 9 8 7 11 11 C 1.46899 * 111.00415 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47579 * 185.27152 * 11 10 9 13 13 C 1.50698 * 115.55257 * 65.06334 * 12 11 10 14 14 H 1.07998 * 120.00105 * 265.55424 * 13 12 11 15 15 C 1.37881 * 119.99716 * 85.54792 * 13 12 11 16 16 N 1.31514 * 119.99889 * 353.74042 * 15 13 12 17 17 Si 1.86797 * 120.00067 * 173.72978 * 15 13 12 18 18 H 1.48500 * 109.46829 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46746 * 120.00447 * 17 15 13 20 20 H 1.48492 * 109.47389 * 240.00427 * 17 15 13 21 21 C 1.53000 * 117.49303 * 279.39920 * 12 11 10 22 22 C 1.53001 * 117.49785 * 210.74234 * 12 11 10 23 23 H 1.08998 * 109.47130 * 60.00263 * 1 2 3 24 24 H 1.09001 * 109.46806 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47304 * 300.00232 * 1 2 3 26 26 H 1.09002 * 109.47304 * 239.99768 * 2 1 3 27 27 H 1.09007 * 109.46934 * 119.99549 * 2 1 3 28 28 H 1.07998 * 120.78927 * 0.04319 * 4 3 2 29 29 H 1.08002 * 120.41460 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.61572 * 180.25856 * 6 5 4 31 31 H 1.09001 * 109.47079 * 209.99916 * 9 8 7 32 32 H 1.09003 * 109.47405 * 329.99916 * 9 8 7 33 33 H 1.00892 * 111.00352 * 303.95692 * 10 9 8 34 34 H 1.09007 * 109.47080 * 305.27412 * 11 10 9 35 35 H 1.09007 * 109.46858 * 65.26538 * 11 10 9 36 36 H 0.97006 * 119.99932 * 179.97438 * 16 15 13 37 37 H 1.08995 * 117.50336 * 0.02562 * 21 12 11 38 38 H 1.09009 * 117.49797 * 145.02180 * 21 12 11 39 39 H 1.09005 * 117.49434 * 214.97812 * 22 12 11 40 40 H 1.08998 * 117.50221 * 359.97077 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3651 2.0479 -1.1913 5 6 2.8234 3.3553 -1.1431 6 6 2.9332 3.9858 0.0821 7 7 2.6076 3.3583 1.1950 8 6 2.1673 2.1152 1.1870 9 6 1.8082 1.4439 2.4875 10 7 0.3912 1.6871 2.7893 11 6 0.0043 1.0455 4.0528 12 6 -1.5018 1.2082 4.2673 13 6 -2.3808 0.5056 3.2650 14 1 -2.7491 1.0397 2.4016 15 6 -2.7147 -0.8193 3.4502 16 7 -2.1690 -1.5040 4.4316 17 14 -3.9422 -1.6418 2.3073 18 1 -4.4067 -0.6622 1.2924 19 1 -3.2916 -2.7896 1.6256 20 1 -5.1035 -2.1274 3.0950 21 6 -1.9954 2.5445 4.8255 22 6 -2.0046 1.2950 5.7097 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 2.2692 1.5300 -2.1342 29 1 3.0912 3.8747 -2.0514 30 1 3.2855 5.0057 0.1278 31 1 1.9827 0.3713 2.4031 32 1 2.4252 1.8504 3.2889 33 1 0.1902 2.6756 2.8090 34 1 0.2532 -0.0150 4.0129 35 1 0.5416 1.5139 4.8776 36 1 -2.4042 -2.4360 4.5621 37 1 -1.2474 3.3078 5.0395 38 1 -2.9563 2.9152 4.4681 39 1 -2.9714 0.8440 5.9336 40 1 -1.2626 1.2357 6.5059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159119429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:57 Heat of formation + Delta-G solvation = 51.928961 kcal Electronic energy + Delta-G solvation = -19672.342965 eV Core-core repulsion = 16873.377287 eV Total energy + Delta-G solvation = -2798.965679 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24559 -37.00769 -34.95450 -34.03825 -31.87639 -31.61751 -29.53487 -26.72173 -25.33378 -24.01907 -23.40234 -21.79308 -21.01509 -20.67070 -18.96489 -16.89128 -16.33961 -15.91931 -15.07133 -14.68678 -14.43882 -14.36634 -13.60000 -13.45961 -13.27062 -13.05804 -13.02104 -12.63809 -12.27667 -11.74433 -11.55725 -11.42367 -11.17823 -10.92755 -10.74514 -10.60447 -10.40867 -10.33428 -10.12148 -9.61335 -9.43059 -9.22534 -8.75894 -8.63765 -8.33907 -8.01029 -7.50799 -5.92886 -3.93758 1.25470 1.42648 3.33609 3.42390 3.47036 3.89025 4.45525 4.49794 4.84555 4.90138 5.05914 5.13528 5.16414 5.37648 5.46237 5.52330 5.68552 5.76947 5.81453 5.84518 6.03571 6.17020 6.20749 6.26309 6.36223 6.41098 6.51412 6.55545 6.62335 6.67440 6.79705 6.87699 6.91947 7.16940 7.25557 7.52169 7.60955 7.94409 8.00466 8.12482 8.21253 8.59909 9.05732 9.69136 11.17032 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.006422 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.111146 B = 4358.734412 C = 5223.493933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.076 4.076 3 C -0.104 4.104 4 C -0.081 4.081 5 C -0.178 4.178 6 C 0.086 3.914 7 N -0.481 5.481 8 C 0.140 3.860 9 C 0.105 3.895 10 N -0.658 5.658 11 C 0.108 3.892 12 C 0.053 3.947 13 C -0.465 4.465 14 H 0.059 0.941 15 C 0.069 3.931 16 N -0.885 5.885 17 Si 0.882 3.118 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.287 1.287 21 C -0.216 4.216 22 C -0.158 4.158 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.334 0.666 34 H 0.077 0.923 35 H -0.004 1.004 36 H 0.256 0.744 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.544 5.519 -8.502 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.114 4.114 3 C -0.107 4.107 4 C -0.107 4.107 5 C -0.198 4.198 6 C -0.071 4.071 7 N -0.190 5.190 8 C 0.002 3.998 9 C -0.025 4.025 10 N -0.288 5.288 11 C -0.021 4.021 12 C 0.052 3.948 13 C -0.503 4.503 14 H 0.077 0.923 15 C -0.132 4.132 16 N -0.523 5.523 17 Si 0.711 3.289 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.254 4.254 22 C -0.196 4.196 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.167 0.833 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.151 0.849 34 H 0.096 0.904 35 H 0.014 0.986 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.405 5.237 -7.996 13.409 hybrid contribution -0.269 -0.299 -0.845 0.936 sum 9.136 4.937 -8.841 13.638 Atomic orbital electron populations 1.21933 0.92801 1.02332 1.04471 1.20514 0.97935 0.90896 1.02037 1.20792 0.98287 0.98378 0.93216 1.21461 0.96544 0.94687 0.98044 1.22037 1.02438 0.95957 0.99367 1.22610 0.96963 0.99619 0.87883 1.67484 1.10737 1.09353 1.31422 1.21142 0.93747 0.89656 0.95226 1.20837 0.91130 0.99496 0.91045 1.60315 1.14218 1.17450 1.36826 1.21569 0.95829 0.98728 0.85926 1.18816 0.90739 0.92563 0.92679 1.20318 1.28145 0.94884 1.06989 0.92256 1.24903 0.95943 0.97181 0.95214 1.70017 1.42524 1.08696 1.31056 0.86692 0.81590 0.79538 0.81129 1.19768 1.21200 1.21341 1.22995 1.01525 0.91946 1.08892 1.22512 1.01786 1.00324 0.94958 0.94171 0.92944 0.87313 0.92209 0.90540 0.85263 0.85337 0.83290 0.89491 0.94601 0.84881 0.90419 0.98579 0.93430 0.92176 0.90602 0.90106 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.90 37.16 0.37 -2.29 16 2 C -0.08 -1.09 5.58 -27.88 -0.16 -1.25 16 3 C -0.10 -1.53 5.15 -104.48 -0.54 -2.07 16 4 C -0.08 -1.02 9.84 -39.28 -0.39 -1.40 16 5 C -0.18 -2.03 10.11 -39.44 -0.40 -2.43 16 6 C 0.09 1.11 11.18 -17.55 -0.20 0.91 16 7 N -0.48 -7.60 10.27 -9.48 -0.10 -7.70 16 8 C 0.14 2.25 6.29 -82.59 -0.52 1.73 16 9 C 0.10 1.76 5.49 -4.98 -0.03 1.74 16 10 N -0.66 -12.66 4.75 -115.06 -0.55 -13.21 16 11 C 0.11 2.34 5.51 -3.83 -0.02 2.32 16 12 C 0.05 1.26 1.55 -155.66 -0.24 1.02 16 13 C -0.47 -12.30 8.74 -34.44 -0.30 -12.60 16 14 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 15 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 16 N -0.88 -24.59 12.91 55.43 0.72 -23.87 16 17 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.22 -4.72 9.96 -26.69 -0.27 -4.98 16 22 C -0.16 -3.70 9.40 -26.69 -0.25 -3.95 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.11 2.18 6.38 -51.93 -0.33 1.84 16 26 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 27 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.09 1.44 6.02 -51.93 -0.31 1.12 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.33 6.48 8.78 -39.30 -0.34 6.14 16 34 H 0.08 1.86 8.13 -51.92 -0.42 1.44 16 35 H 0.00 -0.08 8.09 -51.93 -0.42 -0.50 16 36 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.66 8.14 -51.92 -0.42 1.23 16 39 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -28.04 331.82 -9.32 -37.37 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.34 Total: 7.86 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.03 Total: -21.48 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.07 Total: -44.77 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.04 -9.32 -37.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159119429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.298 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds