Wall clock time and date at job start Mon Mar 30 2020 07:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47025 * 2 1 4 4 C 1.38675 * 120.41580 * 264.97743 * 3 2 1 5 5 C 1.38627 * 118.41629 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.16346 * 0.02562 * 5 4 3 7 7 N 1.31851 * 120.76327 * 359.97438 * 6 5 4 8 8 C 1.31882 * 121.72966 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.61961 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47400 * 89.99828 * 9 8 7 11 11 C 1.46899 * 111.00415 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47579 * 185.27152 * 11 10 9 13 13 C 1.50698 * 115.55257 * 65.06334 * 12 11 10 14 14 H 1.07998 * 120.00105 * 265.55424 * 13 12 11 15 15 C 1.37881 * 119.99716 * 85.54792 * 13 12 11 16 16 N 1.31514 * 119.99889 * 353.74042 * 15 13 12 17 17 Si 1.86797 * 120.00067 * 173.72978 * 15 13 12 18 18 H 1.48500 * 109.46829 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46746 * 120.00447 * 17 15 13 20 20 H 1.48492 * 109.47389 * 240.00427 * 17 15 13 21 21 C 1.53000 * 117.49303 * 279.39920 * 12 11 10 22 22 C 1.53001 * 117.49785 * 210.74234 * 12 11 10 23 23 H 1.08998 * 109.47130 * 60.00263 * 1 2 3 24 24 H 1.09001 * 109.46806 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47304 * 300.00232 * 1 2 3 26 26 H 1.09002 * 109.47304 * 239.99768 * 2 1 3 27 27 H 1.09007 * 109.46934 * 119.99549 * 2 1 3 28 28 H 1.07998 * 120.78927 * 0.04319 * 4 3 2 29 29 H 1.08002 * 120.41460 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.61572 * 180.25856 * 6 5 4 31 31 H 1.09001 * 109.47079 * 209.99916 * 9 8 7 32 32 H 1.09003 * 109.47405 * 329.99916 * 9 8 7 33 33 H 1.00892 * 111.00352 * 303.95692 * 10 9 8 34 34 H 1.09007 * 109.47080 * 305.27412 * 11 10 9 35 35 H 1.09007 * 109.46858 * 65.26538 * 11 10 9 36 36 H 0.97006 * 119.99932 * 179.97438 * 16 15 13 37 37 H 1.08995 * 117.50336 * 0.02562 * 21 12 11 38 38 H 1.09009 * 117.49797 * 145.02180 * 21 12 11 39 39 H 1.09005 * 117.49434 * 214.97812 * 22 12 11 40 40 H 1.08998 * 117.50221 * 359.97077 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3651 2.0479 -1.1913 5 6 2.8234 3.3553 -1.1431 6 6 2.9332 3.9858 0.0821 7 7 2.6076 3.3583 1.1950 8 6 2.1673 2.1152 1.1870 9 6 1.8082 1.4439 2.4875 10 7 0.3912 1.6871 2.7893 11 6 0.0043 1.0455 4.0528 12 6 -1.5018 1.2082 4.2673 13 6 -2.3808 0.5056 3.2650 14 1 -2.7491 1.0397 2.4016 15 6 -2.7147 -0.8193 3.4502 16 7 -2.1690 -1.5040 4.4316 17 14 -3.9422 -1.6418 2.3073 18 1 -4.4067 -0.6622 1.2924 19 1 -3.2916 -2.7896 1.6256 20 1 -5.1035 -2.1274 3.0950 21 6 -1.9954 2.5445 4.8255 22 6 -2.0046 1.2950 5.7097 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 2.2692 1.5300 -2.1342 29 1 3.0912 3.8747 -2.0514 30 1 3.2855 5.0057 0.1278 31 1 1.9827 0.3713 2.4031 32 1 2.4252 1.8504 3.2889 33 1 0.1902 2.6756 2.8090 34 1 0.2532 -0.0150 4.0129 35 1 0.5416 1.5139 4.8776 36 1 -2.4042 -2.4360 4.5621 37 1 -1.2474 3.3078 5.0395 38 1 -2.9563 2.9152 4.4681 39 1 -2.9714 0.8440 5.9336 40 1 -1.2626 1.2357 6.5059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159119429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:57 Heat of formation + Delta-G solvation = 36.757076 kcal Electronic energy + Delta-G solvation = -19673.000868 eV Core-core repulsion = 16873.377287 eV Total energy + Delta-G solvation = -2799.623581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30283 -38.77818 -36.32712 -35.28692 -33.86593 -32.83290 -30.73213 -28.21051 -27.26253 -25.14832 -24.92696 -23.05916 -22.72342 -21.83295 -20.86657 -18.26753 -17.69291 -17.25208 -16.66157 -16.26401 -15.92736 -15.73249 -15.20704 -15.00550 -14.52297 -14.40313 -14.28264 -13.84976 -13.65737 -13.22645 -13.10758 -12.94215 -12.82170 -12.78502 -12.55496 -12.31922 -12.03213 -11.93134 -11.55236 -11.31065 -10.70643 -10.60287 -10.36572 -10.27661 -9.93267 -9.68128 -9.04635 -7.99765 -6.04709 0.22654 0.43011 1.41688 1.45730 1.55211 2.50162 2.81288 3.30413 3.33086 3.52754 3.76384 3.81910 3.98408 4.03483 4.18360 4.38588 4.47719 4.52387 4.60142 4.61939 4.67222 4.68085 4.76621 4.82445 4.86164 5.00795 5.01740 5.08601 5.18289 5.22368 5.29965 5.31416 5.50616 5.65486 5.76614 5.83945 5.88500 5.91639 6.31791 6.50546 6.67593 6.97762 7.13402 7.60050 9.09689 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.006422 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.111146 B = 4358.734412 C = 5223.493933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 C -0.118 4.118 4 C -0.082 4.082 5 C -0.165 4.165 6 C 0.077 3.923 7 N -0.508 5.508 8 C 0.117 3.883 9 C 0.111 3.889 10 N -0.658 5.658 11 C 0.124 3.876 12 C 0.029 3.971 13 C -0.470 4.470 14 H 0.046 0.954 15 C 0.029 3.971 16 N -0.911 5.911 17 Si 0.935 3.065 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.287 1.287 21 C -0.192 4.192 22 C -0.164 4.164 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.158 0.842 29 H 0.168 0.832 30 H 0.178 0.822 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.333 0.667 34 H 0.049 0.951 35 H 0.004 0.996 36 H 0.255 0.745 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.472 6.737 -10.640 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 C -0.121 4.121 4 C -0.108 4.108 5 C -0.184 4.184 6 C -0.080 4.080 7 N -0.218 5.218 8 C -0.020 4.020 9 C -0.018 4.018 10 N -0.288 5.288 11 C -0.005 4.005 12 C 0.028 3.972 13 C -0.508 4.508 14 H 0.064 0.936 15 C -0.170 4.170 16 N -0.550 5.550 17 Si 0.762 3.238 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.213 1.213 21 C -0.229 4.229 22 C -0.202 4.202 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.175 0.825 29 H 0.185 0.815 30 H 0.195 0.805 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.150 0.850 34 H 0.067 0.933 35 H 0.022 0.978 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.331 6.459 -10.138 15.850 hybrid contribution -0.516 -0.587 -0.245 0.819 sum 9.815 5.872 -10.383 15.447 Atomic orbital electron populations 1.21826 0.94827 1.01297 1.03199 1.20431 0.95992 0.91471 1.02843 1.20840 0.99108 0.98339 0.93767 1.21844 0.95475 0.95266 0.98194 1.22462 1.00246 0.95448 1.00276 1.23194 0.96279 1.00775 0.87758 1.67423 1.11678 1.09403 1.33300 1.20928 0.95731 0.90373 0.94979 1.20737 0.89438 0.99528 0.92109 1.60213 1.16177 1.17076 1.35321 1.21214 0.94553 0.97308 0.87386 1.18931 0.91667 0.94172 0.92391 1.20455 1.28276 0.95117 1.06960 0.93571 1.25457 0.97360 0.97749 0.96460 1.70109 1.43662 1.08790 1.32432 0.85867 0.79704 0.78654 0.79601 1.19529 1.20884 1.21287 1.22968 1.01854 0.91467 1.06658 1.22427 1.00947 1.01610 0.95207 0.93194 0.93822 0.90719 0.89511 0.91621 0.82475 0.81456 0.80527 0.89903 0.94926 0.84958 0.93262 0.97827 0.93580 0.89763 0.90705 0.92340 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.90 71.98 0.71 -4.45 16 2 C -0.07 -1.93 5.58 29.85 0.17 -1.76 16 3 C -0.12 -3.28 5.15 -19.77 -0.10 -3.38 16 4 C -0.08 -1.77 9.84 22.47 0.22 -1.55 16 5 C -0.16 -3.10 10.11 22.36 0.23 -2.87 16 6 C 0.08 1.76 11.18 84.69 0.95 2.71 16 7 N -0.51 -15.41 10.27 -183.90 -1.89 -17.30 16 8 C 0.12 3.69 6.29 42.54 0.27 3.95 16 9 C 0.11 3.82 5.49 85.56 0.47 4.29 16 10 N -0.66 -25.76 4.75 -517.93 -2.46 -28.22 16 11 C 0.12 5.51 5.51 86.30 0.48 5.99 16 12 C 0.03 1.41 1.55 -52.93 -0.08 1.33 16 13 C -0.47 -25.29 8.74 25.60 0.22 -25.07 16 14 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 15 C 0.03 1.57 5.39 84.66 0.46 2.02 16 16 N -0.91 -51.68 12.91 21.45 0.28 -51.40 16 17 Si 0.93 43.75 29.54 68.60 2.03 45.78 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 21 C -0.19 -8.25 9.96 30.62 0.30 -7.94 16 22 C -0.16 -7.73 9.40 30.62 0.29 -7.44 16 23 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 3.05 6.38 -2.39 -0.02 3.03 16 26 H 0.09 1.91 8.06 -2.39 -0.02 1.89 16 27 H 0.07 1.94 6.17 -2.38 -0.01 1.92 16 28 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 30 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.08 2.85 6.02 -2.39 -0.01 2.84 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.33 13.00 8.78 -89.70 -0.79 12.21 16 34 H 0.05 2.45 8.13 -2.38 -0.02 2.43 16 35 H 0.00 0.16 8.09 -2.38 -0.02 0.14 16 36 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 37 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 39 H 0.06 2.99 8.14 -2.38 -0.02 2.97 16 40 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -60.99 331.82 2.76 -58.23 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.23 Total: 27.07 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 4.57 Total: -34.16 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -4.07 Total: -96.92 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -60.99 2.76 -58.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159119429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.990 kcal (2) G-P(sol) polarization free energy of solvation -60.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds