Wall clock time and date at job start Mon Mar 30 2020 07:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.09001 * 109.46675 * 179.87252 * 3 2 1 5 5 C 1.50703 * 109.47151 * 299.87183 * 3 2 1 6 6 H 1.07992 * 119.99853 * 119.99981 * 5 3 2 7 7 C 1.37872 * 119.99740 * 299.99966 * 5 3 2 8 8 N 1.31512 * 120.00477 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99832 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.46763 * 60.00440 * 9 7 5 11 11 H 1.48494 * 109.47252 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47339 * 300.00622 * 9 7 5 13 13 N 1.46893 * 109.47110 * 59.87318 * 3 2 1 14 14 C 1.46901 * 111.00216 * 85.94690 * 13 3 2 15 15 C 1.50701 * 109.47258 * 175.53913 * 14 13 3 16 16 C 1.37944 * 119.90667 * 260.00347 * 15 14 13 17 17 C 1.38263 * 120.26541 * 179.73156 * 16 15 14 18 18 C 1.38338 * 119.88675 * 0.12460 * 17 16 15 19 19 C 1.37879 * 120.08250 * 0.02562 * 18 17 16 20 20 C 1.39009 * 120.47366 * 0.28040 * 19 18 17 21 21 N 1.40045 * 110.93943 * 179.24486 * 20 19 18 22 22 C 1.47912 * 107.85566 * 18.64575 * 21 20 19 23 23 C 1.51565 * 131.57612 * 180.65946 * 19 18 17 24 24 H 1.08997 * 109.47776 * 55.59493 * 1 2 3 25 25 H 1.08999 * 109.47176 * 175.59365 * 1 2 3 26 26 H 1.09003 * 109.47301 * 295.59004 * 1 2 3 27 27 H 1.09003 * 109.46922 * 239.99942 * 2 1 3 28 28 H 1.08997 * 109.46999 * 120.00189 * 2 1 3 29 29 H 0.97005 * 120.00256 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00514 * 209.89984 * 13 3 2 31 31 H 1.09002 * 109.46954 * 55.53994 * 14 13 3 32 32 H 1.09000 * 109.46989 * 295.54070 * 14 13 3 33 33 H 1.08009 * 119.86838 * 359.97438 * 16 15 14 34 34 H 1.08008 * 120.05666 * 180.15644 * 17 16 15 35 35 H 1.08003 * 119.96519 * 179.97438 * 18 17 16 36 36 H 1.00896 * 110.99622 * 256.84346 * 21 20 19 37 37 H 1.09004 * 110.77684 * 90.88720 * 22 21 20 38 38 H 1.08993 * 110.77737 * 214.12581 * 22 21 20 39 39 H 1.08996 * 110.73792 * 282.23974 * 23 19 18 40 40 H 1.09006 * 110.73333 * 45.55072 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0023 5 6 1.5402 2.1520 -1.2321 6 1 0.9191 3.0301 -1.1349 7 6 1.8760 1.6800 -2.4832 8 7 2.6319 0.6104 -2.6015 9 14 1.2559 2.5591 -4.0105 10 1 1.7505 3.9594 -4.0107 11 1 1.7541 1.8586 -5.2213 12 1 -0.2290 2.5586 -4.0134 13 7 1.5478 2.1359 1.1978 14 6 2.4412 1.9092 2.3417 15 6 1.9660 2.7214 3.5189 16 6 2.5808 3.9185 3.8216 17 6 2.1473 4.6723 4.8966 18 6 1.0944 4.2232 5.6735 19 6 0.4784 3.0259 5.3771 20 6 0.9109 2.2576 4.3024 21 7 0.1602 1.0802 4.1946 22 6 -1.0936 1.2705 4.9558 23 6 -0.6832 2.3037 6.0301 24 1 -0.3634 0.5806 -0.8478 25 1 -0.3633 -1.0246 -0.0790 26 1 -0.3634 0.4439 0.9269 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.8684 0.2786 -3.4818 30 1 1.4291 3.1222 1.0217 31 1 3.4544 2.2117 2.0769 32 1 2.4346 0.8512 2.6038 33 1 3.4017 4.2704 3.2142 34 1 2.6295 5.6104 5.1291 35 1 0.7550 4.8108 6.5137 36 1 0.6784 0.2879 4.5434 37 1 -1.8786 1.6708 4.3142 38 1 -1.4121 0.3353 5.4162 39 1 -0.3622 1.8036 6.9438 40 1 -1.5015 2.9943 6.2340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163345388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:15 Heat of formation + Delta-G solvation = 30.336309 kcal Electronic energy + Delta-G solvation = -19571.776603 eV Core-core repulsion = 16771.874597 eV Total energy + Delta-G solvation = -2799.902006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34746 -36.66638 -35.81903 -33.21202 -31.46800 -30.18085 -28.95915 -28.46149 -26.34316 -24.14472 -22.94376 -22.39835 -21.25216 -20.19151 -18.86309 -17.10716 -16.30158 -15.70281 -15.20831 -14.97615 -14.73285 -14.08181 -13.71640 -13.54656 -13.23345 -12.84482 -12.66167 -12.49811 -12.15823 -11.92638 -11.69757 -11.54603 -11.32817 -11.01910 -10.89452 -10.81327 -10.53032 -10.28409 -9.95327 -9.64562 -9.46233 -9.23360 -8.71471 -8.46809 -8.37589 -7.63806 -7.04535 -5.94741 -3.99727 1.51610 1.57783 3.35146 3.39509 3.42674 3.87342 3.99713 4.46449 4.63599 4.84479 5.01675 5.12260 5.19968 5.36048 5.43766 5.53087 5.63386 5.67321 5.77085 5.90075 5.94202 6.11855 6.21893 6.45651 6.57544 6.63128 6.67263 6.75223 6.84151 6.96485 7.01175 7.24478 7.40429 7.44147 7.50865 7.62296 7.87729 7.88375 7.95914 8.37990 8.51974 8.78810 9.10677 9.64612 11.10965 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.005191 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.066876 B = 5392.680757 C = 5869.201207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.098 4.098 3 C 0.216 3.784 4 H -0.003 1.003 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.668 5.668 14 C 0.106 3.894 15 C -0.069 4.069 16 C -0.100 4.100 17 C -0.140 4.140 18 C -0.095 4.095 19 C -0.158 4.158 20 C 0.122 3.878 21 N -0.616 5.616 22 C 0.055 3.945 23 C -0.109 4.109 24 H 0.052 0.948 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.008 0.992 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.022 0.978 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.350 0.650 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 3.142 16.719 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.137 4.137 3 C 0.109 3.891 4 H 0.015 0.985 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.299 5.299 14 C -0.023 4.023 15 C -0.072 4.072 16 C -0.119 4.119 17 C -0.158 4.158 18 C -0.114 4.114 19 C -0.161 4.161 20 C 0.023 3.977 21 N -0.244 5.244 22 C -0.073 4.073 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.176 0.824 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.752 2.518 16.069 16.692 hybrid contribution 0.712 1.011 -0.298 1.272 sum -3.040 3.529 15.770 16.444 Atomic orbital electron populations 1.21431 0.97441 0.97073 1.01606 1.21374 0.95120 0.98102 0.99065 1.19144 0.92695 0.91621 0.85641 0.98514 1.21161 1.31417 1.11857 0.90395 0.92467 1.24870 0.95116 0.95013 0.98814 1.69882 1.36815 1.22751 1.23421 0.86658 0.79268 0.79616 0.82423 1.20462 1.21404 1.20251 1.60716 1.48248 1.15536 1.05364 1.20751 0.93665 0.98286 0.89596 1.19547 0.95674 0.95536 0.96407 1.20908 0.99856 0.93855 0.97278 1.20926 0.98003 1.00160 0.96759 1.20257 0.96376 0.94991 0.99809 1.20975 1.00138 0.97843 0.97136 1.19223 0.93497 0.92324 0.92623 1.58193 1.05501 1.04113 1.56560 1.22979 0.92841 0.98422 0.93087 1.21684 0.96274 0.98104 0.98696 0.92911 0.97202 0.93205 0.89892 0.97329 0.93014 0.85554 0.96014 0.91324 0.85891 0.86221 0.86870 0.82436 0.89541 0.90188 0.90676 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.52 37.16 0.35 -2.42 16 2 C -0.10 -2.44 5.59 -26.73 -0.15 -2.59 16 3 C 0.22 5.49 2.30 -68.87 -0.16 5.33 16 4 H 0.00 -0.08 7.71 -51.93 -0.40 -0.48 16 5 C -0.51 -13.93 7.26 -34.44 -0.25 -14.18 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -25.51 11.32 55.43 0.63 -24.89 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.67 -14.53 5.64 -109.22 -0.62 -15.15 16 14 C 0.11 2.00 5.61 -4.97 -0.03 1.97 16 15 C -0.07 -1.13 5.37 -104.31 -0.56 -1.69 16 16 C -0.10 -1.45 9.64 -39.68 -0.38 -1.84 16 17 C -0.14 -1.78 10.06 -39.54 -0.40 -2.18 16 18 C -0.10 -1.20 10.03 -39.68 -0.40 -1.60 16 19 C -0.16 -2.13 6.23 -104.04 -0.65 -2.78 16 20 C 0.12 1.88 6.50 -83.40 -0.54 1.34 16 21 N -0.62 -8.83 7.12 -56.56 -0.40 -9.23 16 22 C 0.06 0.62 7.80 -2.43 -0.02 0.60 16 23 C -0.11 -1.15 7.03 -26.62 -0.19 -1.34 16 24 H 0.05 1.33 7.07 -51.93 -0.37 0.96 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.05 1.14 7.74 -51.93 -0.40 0.74 16 27 H 0.08 2.29 6.07 -51.93 -0.31 1.97 16 28 H 0.01 0.19 7.61 -51.93 -0.39 -0.20 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.33 7.22 8.13 -39.29 -0.32 6.90 16 31 H 0.02 0.41 7.79 -51.93 -0.40 0.01 16 32 H 0.07 1.32 7.61 -51.93 -0.40 0.93 16 33 H 0.12 1.66 8.03 -52.48 -0.42 1.24 16 34 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.35 4.44 8.85 -39.29 -0.35 4.10 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -29.43 322.54 -10.27 -39.70 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.26 Total: 7.94 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -3.46 Total: -19.72 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.39 Total: -49.27 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.43 -10.27 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163345388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.040 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds