Wall clock time and date at job start Mon Mar 30 2020 07:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.09001 * 109.46675 * 179.87252 * 3 2 1 5 5 C 1.50703 * 109.47151 * 299.87183 * 3 2 1 6 6 H 1.07992 * 119.99853 * 119.99981 * 5 3 2 7 7 C 1.37872 * 119.99740 * 299.99966 * 5 3 2 8 8 N 1.31512 * 120.00477 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99832 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.46763 * 60.00440 * 9 7 5 11 11 H 1.48494 * 109.47252 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47339 * 300.00622 * 9 7 5 13 13 N 1.46893 * 109.47110 * 59.87318 * 3 2 1 14 14 C 1.46901 * 111.00216 * 85.94690 * 13 3 2 15 15 C 1.50701 * 109.47258 * 175.53913 * 14 13 3 16 16 C 1.37944 * 119.90667 * 260.00347 * 15 14 13 17 17 C 1.38263 * 120.26541 * 179.73156 * 16 15 14 18 18 C 1.38338 * 119.88675 * 0.12460 * 17 16 15 19 19 C 1.37879 * 120.08250 * 0.02562 * 18 17 16 20 20 C 1.39009 * 120.47366 * 0.28040 * 19 18 17 21 21 N 1.40045 * 110.93943 * 179.24486 * 20 19 18 22 22 C 1.47912 * 107.85566 * 18.64575 * 21 20 19 23 23 C 1.51565 * 131.57612 * 180.65946 * 19 18 17 24 24 H 1.08997 * 109.47776 * 55.59493 * 1 2 3 25 25 H 1.08999 * 109.47176 * 175.59365 * 1 2 3 26 26 H 1.09003 * 109.47301 * 295.59004 * 1 2 3 27 27 H 1.09003 * 109.46922 * 239.99942 * 2 1 3 28 28 H 1.08997 * 109.46999 * 120.00189 * 2 1 3 29 29 H 0.97005 * 120.00256 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00514 * 209.89984 * 13 3 2 31 31 H 1.09002 * 109.46954 * 55.53994 * 14 13 3 32 32 H 1.09000 * 109.46989 * 295.54070 * 14 13 3 33 33 H 1.08009 * 119.86838 * 359.97438 * 16 15 14 34 34 H 1.08008 * 120.05666 * 180.15644 * 17 16 15 35 35 H 1.08003 * 119.96519 * 179.97438 * 18 17 16 36 36 H 1.00896 * 110.99622 * 256.84346 * 21 20 19 37 37 H 1.09004 * 110.77684 * 90.88720 * 22 21 20 38 38 H 1.08993 * 110.77737 * 214.12581 * 22 21 20 39 39 H 1.08996 * 110.73792 * 282.23974 * 23 19 18 40 40 H 1.09006 * 110.73333 * 45.55072 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0023 5 6 1.5402 2.1520 -1.2321 6 1 0.9191 3.0301 -1.1349 7 6 1.8760 1.6800 -2.4832 8 7 2.6319 0.6104 -2.6015 9 14 1.2559 2.5591 -4.0105 10 1 1.7505 3.9594 -4.0107 11 1 1.7541 1.8586 -5.2213 12 1 -0.2290 2.5586 -4.0134 13 7 1.5478 2.1359 1.1978 14 6 2.4412 1.9092 2.3417 15 6 1.9660 2.7214 3.5189 16 6 2.5808 3.9185 3.8216 17 6 2.1473 4.6723 4.8966 18 6 1.0944 4.2232 5.6735 19 6 0.4784 3.0259 5.3771 20 6 0.9109 2.2576 4.3024 21 7 0.1602 1.0802 4.1946 22 6 -1.0936 1.2705 4.9558 23 6 -0.6832 2.3037 6.0301 24 1 -0.3634 0.5806 -0.8478 25 1 -0.3633 -1.0246 -0.0790 26 1 -0.3634 0.4439 0.9269 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.8684 0.2786 -3.4818 30 1 1.4291 3.1222 1.0217 31 1 3.4544 2.2117 2.0769 32 1 2.4346 0.8512 2.6038 33 1 3.4017 4.2704 3.2142 34 1 2.6295 5.6104 5.1291 35 1 0.7550 4.8108 6.5137 36 1 0.6784 0.2879 4.5434 37 1 -1.8786 1.6708 4.3142 38 1 -1.4121 0.3353 5.4162 39 1 -0.3622 1.8036 6.9438 40 1 -1.5015 2.9943 6.2340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163345388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:15 Heat of formation + Delta-G solvation = 12.268779 kcal Electronic energy + Delta-G solvation = -19572.560070 eV Core-core repulsion = 16771.874597 eV Total energy + Delta-G solvation = -2800.685473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37794 -38.22604 -37.15311 -34.87455 -33.22017 -31.75729 -30.04589 -29.56809 -28.18691 -25.78192 -24.86718 -23.38990 -22.30361 -21.38556 -20.80366 -18.50764 -17.91920 -16.95439 -16.70999 -16.19850 -16.03475 -15.71110 -15.25906 -15.06490 -14.67452 -14.20160 -14.02981 -13.85846 -13.49701 -13.41328 -13.27477 -12.80593 -12.80114 -12.66950 -12.39983 -12.31698 -12.10884 -11.95193 -11.75325 -11.46868 -11.22419 -10.78701 -10.53011 -10.50277 -9.57878 -8.89091 -8.67818 -8.07439 -6.19845 0.45867 0.49796 1.42548 1.44219 1.51518 2.43737 2.80440 3.02846 3.20676 3.73449 3.82467 3.90158 4.11051 4.23121 4.26901 4.44899 4.51817 4.60786 4.66144 4.77497 4.79841 4.84410 4.88635 5.00358 5.03054 5.09436 5.27600 5.35559 5.45108 5.54353 5.57148 5.61638 5.67500 5.74325 5.86145 5.90629 5.94399 6.26592 6.31305 6.46040 6.54927 6.84220 7.05820 7.48699 8.97276 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.005191 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.066876 B = 5392.680757 C = 5869.201207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.092 4.092 3 C 0.223 3.777 4 H -0.040 1.040 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.661 5.661 14 C 0.116 3.884 15 C -0.096 4.096 16 C -0.111 4.111 17 C -0.138 4.138 18 C -0.093 4.093 19 C -0.165 4.165 20 C 0.104 3.896 21 N -0.639 5.639 22 C 0.054 3.946 23 C -0.100 4.100 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.016 0.984 29 H 0.261 0.739 30 H 0.324 0.676 31 H 0.012 0.988 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.355 0.645 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 4.195 18.395 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C 0.115 3.885 4 H -0.022 1.022 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.291 5.291 14 C -0.013 4.013 15 C -0.099 4.099 16 C -0.130 4.130 17 C -0.156 4.156 18 C -0.112 4.112 19 C -0.168 4.168 20 C 0.006 3.994 21 N -0.267 5.267 22 C -0.074 4.074 23 C -0.138 4.138 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.181 0.819 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.123 3.575 17.767 18.833 hybrid contribution 1.158 0.686 -0.737 1.535 sum -3.965 4.260 17.029 17.996 Atomic orbital electron populations 1.21245 0.95972 0.97933 1.00749 1.21237 0.96234 0.97533 0.98046 1.18938 0.90427 0.92315 0.86836 1.02212 1.21398 1.31394 1.11920 0.91439 0.92820 1.25616 0.95223 0.95656 1.01648 1.70017 1.37673 1.23904 1.24007 0.85668 0.78755 0.78672 0.78859 1.19781 1.20999 1.19808 1.60642 1.48767 1.14942 1.04747 1.20612 0.92702 0.98370 0.89662 1.19404 0.97591 0.96512 0.96345 1.21038 1.00075 0.93649 0.98271 1.21252 0.97905 1.00758 0.95691 1.20673 0.95603 0.94705 1.00196 1.21404 1.00768 0.97972 0.96617 1.19401 0.93500 0.93223 0.93305 1.58172 1.06524 1.04151 1.57884 1.23068 0.91215 1.00105 0.93017 1.21701 0.95531 0.97823 0.98752 0.95006 0.95229 0.92790 0.92605 0.96524 0.93024 0.85897 0.96987 0.92258 0.85771 0.83444 0.83815 0.81901 0.90805 0.87522 0.88696 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.76 9.52 71.98 0.69 -4.07 16 2 C -0.09 -4.68 5.59 30.59 0.17 -4.51 16 3 C 0.22 11.71 2.30 44.17 0.10 11.81 16 4 H -0.04 -2.32 7.71 -2.39 -0.02 -2.34 16 5 C -0.52 -29.18 7.26 25.60 0.19 -28.99 16 6 H 0.05 2.97 7.60 -2.91 -0.02 2.95 16 7 C 0.02 0.99 5.30 84.65 0.45 1.44 16 8 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 N -0.66 -29.58 5.64 -499.46 -2.82 -32.39 16 14 C 0.12 4.51 5.61 85.56 0.48 4.99 16 15 C -0.10 -3.17 5.37 -19.66 -0.11 -3.27 16 16 C -0.11 -3.18 9.64 22.21 0.21 -2.97 16 17 C -0.14 -3.19 10.06 22.30 0.22 -2.96 16 18 C -0.09 -2.05 10.03 22.21 0.22 -1.83 16 19 C -0.16 -4.05 6.23 -19.49 -0.12 -4.17 16 20 C 0.10 3.13 6.50 38.28 0.25 3.38 16 21 N -0.64 -17.76 7.12 -332.87 -2.37 -20.13 16 22 C 0.05 1.10 7.80 86.65 0.68 1.77 16 23 C -0.10 -1.79 7.03 30.67 0.22 -1.57 16 24 H 0.03 1.59 7.07 -2.39 -0.02 1.57 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 2.45 7.74 -2.39 -0.02 2.43 16 27 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 28 H 0.02 0.78 7.61 -2.39 -0.02 0.77 16 29 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 30 H 0.32 14.72 8.13 -89.69 -0.73 13.99 16 31 H 0.01 0.48 7.79 -2.39 -0.02 0.47 16 32 H 0.06 2.37 7.61 -2.39 -0.02 2.36 16 33 H 0.12 3.38 8.03 -2.91 -0.02 3.36 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.35 8.80 8.85 -89.70 -0.79 8.01 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -63.92 322.54 0.25 -63.67 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.49 Total: 26.85 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.65 Total: -30.96 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.94 Total: -105.94 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.92 0.25 -63.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163345388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.938 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds