Wall clock time and date at job start Mon Mar 30 2020 07:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47485 * 2 1 4 4 H 1.08996 * 109.62751 * 54.35166 * 3 2 1 5 5 C 1.53239 * 109.62419 * 293.96950 * 3 2 1 6 6 N 1.46908 * 109.33942 * 186.46067 * 5 3 2 7 7 C 1.39673 * 110.99859 * 187.25548 * 6 5 3 8 8 C 1.38913 * 120.06932 * 180.02562 * 7 6 5 9 9 C 1.38104 * 119.91954 * 179.72005 * 8 7 6 10 10 C 1.38284 * 120.07775 * 0.27609 * 9 8 7 11 11 C 1.38284 * 120.14787 * 0.02562 * 10 9 8 12 12 C 1.38096 * 120.07808 * 359.97438 * 11 10 9 13 13 C 1.46893 * 111.26875 * 63.10064 * 6 5 3 14 14 C 1.53236 * 109.34406 * 296.89878 * 13 6 5 15 15 N 1.47071 * 109.62966 * 174.93914 * 3 2 1 16 16 C 1.36936 * 120.88567 * 350.91493 * 15 3 2 17 17 H 1.08002 * 119.99531 * 41.67719 * 16 15 3 18 18 C 1.38810 * 120.00047 * 221.68256 * 16 15 3 19 19 N 1.31624 * 119.99531 * 213.46639 * 18 16 15 20 20 Si 1.86793 * 120.00445 * 33.46490 * 18 16 15 21 21 H 1.48501 * 109.47063 * 86.25322 * 20 18 16 22 22 H 1.48497 * 109.47398 * 206.25444 * 20 18 16 23 23 H 1.48500 * 109.47066 * 326.25515 * 20 18 16 24 24 H 1.08999 * 109.47151 * 67.82758 * 1 2 3 25 25 H 1.08993 * 109.47595 * 187.82985 * 1 2 3 26 26 H 1.09007 * 109.47006 * 307.83585 * 1 2 3 27 27 H 1.08993 * 109.47286 * 239.99528 * 2 1 3 28 28 H 1.09001 * 109.46792 * 119.99425 * 2 1 3 29 29 H 1.09003 * 109.49803 * 66.50263 * 5 3 2 30 30 H 1.09004 * 109.49527 * 306.41638 * 5 3 2 31 31 H 1.08000 * 120.03923 * 359.97438 * 8 7 6 32 32 H 1.08004 * 119.96196 * 180.29452 * 9 8 7 33 33 H 1.08001 * 119.92413 * 179.97438 * 10 9 8 34 34 H 1.08007 * 119.95802 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.04376 * 180.02562 * 12 11 10 36 36 H 1.09006 * 109.49406 * 56.85659 * 13 6 5 37 37 H 1.09000 * 109.49159 * 176.93617 * 13 6 5 38 38 H 1.08997 * 109.62624 * 294.12204 * 14 13 6 39 39 H 1.08999 * 109.79700 * 173.63373 * 14 13 6 40 40 H 0.97000 * 119.99526 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5981 1.9871 0.8342 5 6 1.6589 2.1232 -1.3189 6 7 2.2819 3.4523 -1.3783 7 6 1.8278 4.1688 -2.4879 8 6 2.2981 5.4539 -2.7266 9 6 1.8513 6.1574 -3.8279 10 6 0.9327 5.5861 -4.6893 11 6 0.4579 4.3094 -4.4511 12 6 0.9003 3.6003 -3.3518 13 6 3.7475 3.3542 -1.3787 14 6 4.2144 2.7239 -0.0623 15 7 3.5057 1.4483 0.1222 16 6 4.1925 0.2966 0.3998 17 1 3.9128 -0.6284 -0.0825 18 6 5.2479 0.3180 1.3012 19 7 6.2802 -0.4794 1.1247 20 14 5.2034 1.4783 2.7643 21 1 4.4787 0.8311 3.8874 22 1 6.5911 1.7948 3.1876 23 1 4.5047 2.7314 2.3812 24 1 -0.3633 0.3878 -0.9517 25 1 -0.3634 -1.0180 0.1400 26 1 -0.3633 0.6304 0.8117 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5752 2.2267 -1.3750 30 1 2.0107 1.5189 -2.1551 31 1 3.0152 5.9008 -2.0541 32 1 2.2201 7.1548 -4.0168 33 1 0.5848 6.1386 -5.5496 34 1 -0.2599 3.8663 -5.1257 35 1 0.5294 2.6030 -3.1665 36 1 4.0703 2.7327 -2.2140 37 1 4.1787 4.3503 -1.4780 38 1 3.9842 3.3937 0.7662 39 1 5.2887 2.5437 -0.0998 40 1 7.0179 -0.4642 1.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184009546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:19 Heat of formation + Delta-G solvation = 60.463660 kcal Electronic energy + Delta-G solvation = -20045.139581 eV Core-core repulsion = 17246.543995 eV Total energy + Delta-G solvation = -2798.595586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.99881 -37.75994 -34.93848 -33.36659 -31.62310 -30.92809 -29.39725 -28.81424 -26.12584 -24.40820 -23.09106 -22.09971 -21.40786 -20.32606 -19.29061 -17.41078 -16.44402 -15.53073 -15.36932 -14.99696 -14.44454 -14.23771 -14.01094 -13.86094 -13.51829 -13.32349 -12.91187 -12.67841 -12.40122 -12.29090 -11.99447 -11.67655 -11.37924 -11.15362 -10.88742 -10.67650 -10.63630 -10.47279 -10.18836 -9.93896 -9.84688 -9.47213 -9.44647 -8.82306 -8.39138 -7.53948 -6.72371 -6.10088 -3.43408 1.52128 1.55318 3.39608 3.50363 3.56770 3.83267 4.19608 4.55664 4.85628 4.97688 5.05497 5.18523 5.24334 5.49760 5.52550 5.56922 5.61768 5.67419 5.71859 5.85811 5.93850 5.95601 5.98293 6.05436 6.14381 6.19141 6.31835 6.42571 6.48487 6.53047 6.53551 6.65737 6.68035 6.82736 6.94852 7.02099 7.09569 7.41123 7.62716 8.00442 8.39319 8.95627 9.68549 10.18890 11.05230 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.006350 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.680736 B = 4408.532071 C = 5125.332859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.172 3.828 4 H 0.035 0.965 5 C 0.044 3.956 6 N -0.488 5.488 7 C 0.127 3.873 8 C -0.148 4.148 9 C -0.096 4.096 10 C -0.161 4.161 11 C -0.094 4.094 12 C -0.177 4.177 13 C 0.045 3.955 14 C 0.144 3.856 15 N -0.598 5.598 16 C -0.275 4.275 17 H 0.077 0.923 18 C 0.050 3.950 19 N -0.882 5.882 20 Si 0.844 3.156 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.257 1.257 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.186 9.090 -8.281 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C 0.066 3.934 4 H 0.053 0.947 5 C -0.084 4.084 6 N -0.201 5.201 7 C 0.027 3.973 8 C -0.169 4.169 9 C -0.115 4.115 10 C -0.181 4.181 11 C -0.113 4.113 12 C -0.198 4.198 13 C -0.081 4.081 14 C 0.018 3.982 15 N -0.322 5.322 16 C -0.403 4.403 17 H 0.094 0.906 18 C -0.152 4.152 19 N -0.520 5.520 20 Si 0.671 3.329 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.182 1.182 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.074 9.183 -7.716 15.664 hybrid contribution 0.236 0.267 0.351 0.500 sum -9.839 9.449 -7.366 15.503 Atomic orbital electron populations 1.21831 0.97097 1.00942 1.00925 1.21547 0.93276 0.96749 1.03446 1.20681 0.85874 0.93916 0.92931 0.94716 1.22893 0.98095 0.87171 1.00208 1.58941 1.08456 1.17542 1.35198 1.19231 0.95626 0.93810 0.88596 1.20807 1.03149 0.93786 0.99124 1.20950 0.96869 0.99283 0.94404 1.20956 1.00204 0.96243 1.00659 1.20956 0.98968 0.94609 0.96776 1.21353 1.02255 1.00670 0.95517 1.22873 0.83970 1.00330 1.00969 1.21471 0.96692 0.87514 0.92503 1.44420 0.99889 1.05498 1.82376 1.18576 1.12207 0.88809 1.20735 0.90593 1.25605 0.95917 0.96067 0.97656 1.70059 1.05643 1.40852 1.35478 0.87364 0.76579 0.82934 0.85985 1.21499 1.22398 1.18199 0.93524 0.93199 0.93080 0.92070 0.90253 0.90912 0.93740 0.85956 0.86369 0.86716 0.86514 0.85651 0.93761 0.91118 0.94756 0.90807 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.51 37.16 0.35 -1.78 16 2 C -0.11 -2.03 4.27 -26.73 -0.11 -2.15 16 3 C 0.17 3.41 3.11 -67.49 -0.21 3.20 16 4 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 5 C 0.04 0.77 3.21 -3.70 -0.01 0.76 16 6 N -0.49 -8.57 4.67 -170.81 -0.80 -9.36 16 7 C 0.13 1.99 5.65 -83.79 -0.47 1.52 16 8 C -0.15 -2.10 9.14 -39.38 -0.36 -2.46 16 9 C -0.10 -1.17 10.04 -39.61 -0.40 -1.57 16 10 C -0.16 -1.89 10.04 -39.55 -0.40 -2.29 16 11 C -0.09 -1.17 10.04 -39.62 -0.40 -1.56 16 12 C -0.18 -2.53 8.83 -39.38 -0.35 -2.88 16 13 C 0.05 0.82 5.42 -3.71 -0.02 0.80 16 14 C 0.14 3.10 4.76 -3.60 -0.02 3.09 16 15 N -0.60 -13.85 2.49 -164.49 -0.41 -14.26 16 16 C -0.28 -7.35 8.36 -15.06 -0.13 -7.47 16 17 H 0.08 2.17 7.02 -52.49 -0.37 1.80 16 18 C 0.05 1.40 4.89 -17.43 -0.09 1.32 16 19 N -0.88 -26.00 13.97 55.49 0.78 -25.23 16 20 Si 0.84 21.16 27.40 -169.99 -4.66 16.50 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.26 -6.23 5.10 56.52 0.29 -5.94 16 24 H 0.05 0.60 7.16 -51.93 -0.37 0.23 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 27 H 0.06 1.15 7.81 -51.93 -0.41 0.75 16 28 H 0.08 1.61 7.38 -51.93 -0.38 1.23 16 29 H 0.07 1.13 5.86 -51.93 -0.30 0.82 16 30 H 0.04 0.81 7.83 -51.93 -0.41 0.40 16 31 H 0.12 1.65 7.15 -52.49 -0.38 1.27 16 32 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.13 1.71 5.80 -52.49 -0.30 1.41 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 38 H 0.03 0.76 6.51 -51.93 -0.34 0.42 16 39 H 0.07 1.68 7.17 -51.93 -0.37 1.31 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -29.17 306.49 -9.26 -38.43 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.18 Total: 0.79 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.60 Total: -11.48 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.43 Total: -48.86 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.66 Total: 16.50 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.17 -9.26 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184009546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.896 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds