Wall clock time and date at job start Mon Mar 30 2020 07:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47485 * 2 1 4 4 H 1.08996 * 109.62751 * 54.35166 * 3 2 1 5 5 C 1.53239 * 109.62419 * 293.96950 * 3 2 1 6 6 N 1.46908 * 109.33942 * 186.46067 * 5 3 2 7 7 C 1.39673 * 110.99859 * 187.25548 * 6 5 3 8 8 C 1.38913 * 120.06932 * 180.02562 * 7 6 5 9 9 C 1.38104 * 119.91954 * 179.72005 * 8 7 6 10 10 C 1.38284 * 120.07775 * 0.27609 * 9 8 7 11 11 C 1.38284 * 120.14787 * 0.02562 * 10 9 8 12 12 C 1.38096 * 120.07808 * 359.97438 * 11 10 9 13 13 C 1.46893 * 111.26875 * 63.10064 * 6 5 3 14 14 C 1.53236 * 109.34406 * 296.89878 * 13 6 5 15 15 N 1.47071 * 109.62966 * 174.93914 * 3 2 1 16 16 C 1.36936 * 120.88567 * 350.91493 * 15 3 2 17 17 H 1.08002 * 119.99531 * 41.67719 * 16 15 3 18 18 C 1.38810 * 120.00047 * 221.68256 * 16 15 3 19 19 N 1.31624 * 119.99531 * 213.46639 * 18 16 15 20 20 Si 1.86793 * 120.00445 * 33.46490 * 18 16 15 21 21 H 1.48501 * 109.47063 * 86.25322 * 20 18 16 22 22 H 1.48497 * 109.47398 * 206.25444 * 20 18 16 23 23 H 1.48500 * 109.47066 * 326.25515 * 20 18 16 24 24 H 1.08999 * 109.47151 * 67.82758 * 1 2 3 25 25 H 1.08993 * 109.47595 * 187.82985 * 1 2 3 26 26 H 1.09007 * 109.47006 * 307.83585 * 1 2 3 27 27 H 1.08993 * 109.47286 * 239.99528 * 2 1 3 28 28 H 1.09001 * 109.46792 * 119.99425 * 2 1 3 29 29 H 1.09003 * 109.49803 * 66.50263 * 5 3 2 30 30 H 1.09004 * 109.49527 * 306.41638 * 5 3 2 31 31 H 1.08000 * 120.03923 * 359.97438 * 8 7 6 32 32 H 1.08004 * 119.96196 * 180.29452 * 9 8 7 33 33 H 1.08001 * 119.92413 * 179.97438 * 10 9 8 34 34 H 1.08007 * 119.95802 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.04376 * 180.02562 * 12 11 10 36 36 H 1.09006 * 109.49406 * 56.85659 * 13 6 5 37 37 H 1.09000 * 109.49159 * 176.93617 * 13 6 5 38 38 H 1.08997 * 109.62624 * 294.12204 * 14 13 6 39 39 H 1.08999 * 109.79700 * 173.63373 * 14 13 6 40 40 H 0.97000 * 119.99526 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5981 1.9871 0.8342 5 6 1.6589 2.1232 -1.3189 6 7 2.2819 3.4523 -1.3783 7 6 1.8278 4.1688 -2.4879 8 6 2.2981 5.4539 -2.7266 9 6 1.8513 6.1574 -3.8279 10 6 0.9327 5.5861 -4.6893 11 6 0.4579 4.3094 -4.4511 12 6 0.9003 3.6003 -3.3518 13 6 3.7475 3.3542 -1.3787 14 6 4.2144 2.7239 -0.0623 15 7 3.5057 1.4483 0.1222 16 6 4.1925 0.2966 0.3998 17 1 3.9128 -0.6284 -0.0825 18 6 5.2479 0.3180 1.3012 19 7 6.2802 -0.4794 1.1247 20 14 5.2034 1.4783 2.7643 21 1 4.4787 0.8311 3.8874 22 1 6.5911 1.7948 3.1876 23 1 4.5047 2.7314 2.3812 24 1 -0.3633 0.3878 -0.9517 25 1 -0.3634 -1.0180 0.1400 26 1 -0.3633 0.6304 0.8117 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5752 2.2267 -1.3750 30 1 2.0107 1.5189 -2.1551 31 1 3.0152 5.9008 -2.0541 32 1 2.2201 7.1548 -4.0168 33 1 0.5848 6.1386 -5.5496 34 1 -0.2599 3.8663 -5.1257 35 1 0.5294 2.6030 -3.1665 36 1 4.0703 2.7327 -2.2140 37 1 4.1787 4.3503 -1.4780 38 1 3.9842 3.3937 0.7662 39 1 5.2887 2.5437 -0.0998 40 1 7.0179 -0.4642 1.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184009546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:19 Heat of formation + Delta-G solvation = 43.707820 kcal Electronic energy + Delta-G solvation = -20045.866169 eV Core-core repulsion = 17246.543995 eV Total energy + Delta-G solvation = -2799.322174 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24314 -39.10421 -36.37749 -35.03383 -33.51991 -31.96713 -30.78398 -30.13947 -27.72808 -25.80340 -24.80475 -23.23841 -22.75069 -21.63185 -20.95662 -18.64942 -18.26490 -16.96963 -16.64820 -16.54785 -16.16229 -15.59913 -15.35085 -15.16089 -14.93822 -14.55490 -14.44676 -14.27934 -13.97584 -13.62011 -13.41990 -13.02607 -12.75264 -12.63664 -12.31211 -12.27538 -12.22310 -12.01293 -11.70753 -11.59309 -11.45317 -11.21427 -10.71878 -10.47135 -9.80481 -8.78403 -8.61395 -8.26422 -5.55756 0.51874 0.54145 1.35827 1.43566 1.53058 2.45654 2.67919 2.94500 3.03925 3.34406 3.93743 4.03257 4.09636 4.14989 4.26932 4.30723 4.34804 4.38019 4.50147 4.56712 4.62162 4.62992 4.65561 4.76936 4.81304 4.93438 4.97511 5.06129 5.15936 5.18840 5.25944 5.39229 5.45710 5.56796 5.59983 5.69767 5.91079 5.95354 6.10726 6.24678 6.44588 6.97852 7.62199 8.15383 8.93328 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.006350 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.680736 B = 4408.532071 C = 5125.332859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.167 3.833 4 H 0.032 0.968 5 C 0.058 3.942 6 N -0.495 5.495 7 C 0.096 3.904 8 C -0.159 4.159 9 C -0.098 4.098 10 C -0.155 4.155 11 C -0.098 4.098 12 C -0.187 4.187 13 C 0.058 3.942 14 C 0.143 3.857 15 N -0.610 5.610 16 C -0.258 4.258 17 H 0.046 0.954 18 C 0.002 3.998 19 N -0.928 5.928 20 Si 0.903 3.097 21 H -0.294 1.294 22 H -0.299 1.299 23 H -0.244 1.244 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.032 0.968 31 H 0.124 0.876 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.028 0.972 37 H 0.094 0.906 38 H 0.033 0.967 39 H 0.054 0.946 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.439 11.491 -9.681 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C 0.061 3.939 4 H 0.050 0.950 5 C -0.070 4.070 6 N -0.210 5.210 7 C -0.001 4.001 8 C -0.179 4.179 9 C -0.116 4.116 10 C -0.174 4.174 11 C -0.116 4.116 12 C -0.208 4.208 13 C -0.068 4.068 14 C 0.017 3.983 15 N -0.335 5.335 16 C -0.387 4.387 17 H 0.064 0.936 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.730 3.270 21 H -0.221 1.221 22 H -0.226 1.226 23 H -0.168 1.168 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.051 0.949 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.046 0.954 37 H 0.112 0.888 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.370 11.624 -9.135 19.276 hybrid contribution 0.858 -0.439 0.624 1.148 sum -11.512 11.185 -8.510 18.167 Atomic orbital electron populations 1.21745 0.93452 1.02278 1.02263 1.21452 0.96400 0.95325 1.01301 1.20877 0.83550 0.95121 0.94304 0.95037 1.22689 0.99372 0.87073 0.97823 1.58965 1.07452 1.17420 1.37155 1.19345 0.97234 0.94484 0.89086 1.20983 1.03432 0.93473 1.00017 1.21306 0.96496 1.00313 0.93474 1.21393 0.98960 0.95990 1.01028 1.21302 0.99112 0.94896 0.96311 1.21493 1.02158 1.01068 0.96109 1.22616 0.85378 1.00831 0.98020 1.21423 0.95639 0.86892 0.94338 1.44576 1.01577 1.04965 1.82416 1.18450 1.11697 0.89151 1.19436 0.93607 1.26063 0.95882 0.98030 0.99722 1.70141 1.06625 1.43633 1.36586 0.86431 0.76240 0.81672 0.82688 1.22103 1.22648 1.16812 0.91641 0.91779 0.92361 0.93467 0.93186 0.88507 0.94938 0.85802 0.83682 0.83683 0.83964 0.85560 0.95382 0.88783 0.94916 0.92755 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.51 71.98 0.68 -3.03 16 2 C -0.11 -3.90 4.27 30.59 0.13 -3.77 16 3 C 0.17 6.58 3.11 44.96 0.14 6.72 16 4 H 0.03 1.29 8.13 -2.39 -0.02 1.27 16 5 C 0.06 1.97 3.21 86.38 0.28 2.24 16 6 N -0.50 -16.80 4.67 -694.33 -3.24 -20.04 16 7 C 0.10 2.85 5.65 38.22 0.22 3.07 16 8 C -0.16 -4.11 9.14 22.40 0.20 -3.91 16 9 C -0.10 -2.01 10.04 22.25 0.22 -1.79 16 10 C -0.15 -2.96 10.04 22.29 0.22 -2.73 16 11 C -0.10 -2.06 10.04 22.25 0.22 -1.83 16 12 C -0.19 -4.90 8.83 22.40 0.20 -4.70 16 13 C 0.06 2.11 5.42 86.38 0.47 2.58 16 14 C 0.14 6.17 4.76 86.35 0.41 6.59 16 15 N -0.61 -28.80 2.49 -674.31 -1.68 -30.48 16 16 C -0.26 -14.28 8.36 84.03 0.70 -13.58 16 17 H 0.05 2.78 7.02 -2.91 -0.02 2.76 16 18 C 0.00 0.12 4.89 84.86 0.41 0.53 16 19 N -0.93 -56.80 13.97 21.65 0.30 -56.50 16 20 Si 0.90 44.89 27.40 68.60 1.88 46.76 16 21 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 23 H -0.24 -11.47 5.10 99.48 0.51 -10.96 16 24 H 0.06 1.50 7.16 -2.39 -0.02 1.49 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.48 8.12 -2.38 -0.02 1.46 16 27 H 0.05 1.83 7.81 -2.39 -0.02 1.81 16 28 H 0.05 2.10 7.38 -2.39 -0.02 2.08 16 29 H 0.10 2.78 5.86 -2.39 -0.01 2.77 16 30 H 0.03 1.17 7.83 -2.38 -0.02 1.15 16 31 H 0.12 3.07 7.15 -2.91 -0.02 3.05 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.13 3.17 5.80 -2.91 -0.02 3.15 16 36 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.09 2.92 6.66 -2.39 -0.02 2.91 16 38 H 0.03 1.43 6.51 -2.39 -0.02 1.42 16 39 H 0.05 2.53 7.17 -2.39 -0.02 2.51 16 40 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -64.54 306.49 2.59 -61.95 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.81 Total: 11.93 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 4.52 Total: -13.63 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -4.62 Total: -107.02 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.76 kcal Total: -64.54 2.59 -61.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184009546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.662 kcal (2) G-P(sol) polarization free energy of solvation -64.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds