Wall clock time and date at job start Mon Mar 30 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00139 * 2 1 4 4 H 1.48500 * 109.46690 * 269.98962 * 3 2 1 5 5 H 1.48495 * 109.47015 * 29.99383 * 3 2 1 6 6 H 1.48504 * 109.46986 * 149.99597 * 3 2 1 7 7 C 1.37879 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00084 * 189.64133 * 7 2 1 9 9 C 1.50697 * 120.00057 * 9.63682 * 7 2 1 10 10 H 1.09004 * 109.47191 * 185.32355 * 9 7 2 11 11 N 1.46896 * 109.47491 * 305.32615 * 9 7 2 12 12 N 1.45396 * 111.00457 * 269.99762 * 11 9 7 13 13 C 1.46844 * 111.00282 * 244.21058 * 12 11 9 14 14 C 1.53038 * 109.52496 * 174.15656 * 13 12 11 15 15 C 1.53121 * 109.27677 * 59.17633 * 14 13 12 16 16 C 1.53120 * 109.16295 * 302.34795 * 15 14 13 17 17 C 1.46851 * 111.00163 * 119.99541 * 12 11 9 18 18 C 1.50703 * 109.46895 * 65.32682 * 9 7 2 19 19 C 1.38234 * 119.99693 * 272.61639 * 18 9 7 20 20 C 1.38239 * 119.99546 * 180.02562 * 19 18 9 21 21 C 1.38234 * 120.00271 * 0.07152 * 20 19 18 22 22 C 1.38236 * 120.00060 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.00052 * 92.75022 * 18 9 7 24 24 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 25 25 H 1.00901 * 111.00569 * 146.04100 * 11 9 7 26 26 H 1.08998 * 109.45810 * 294.16879 * 13 12 11 27 27 H 1.08993 * 109.46501 * 54.14107 * 13 12 11 28 28 H 1.08999 * 109.50555 * 299.24311 * 14 13 12 29 29 H 1.09000 * 109.50453 * 179.11872 * 14 13 12 30 30 H 1.09000 * 109.52575 * 182.43842 * 15 14 13 31 31 H 1.09005 * 109.52259 * 62.25341 * 15 14 13 32 32 H 1.09001 * 109.50235 * 297.70996 * 16 15 14 33 33 H 1.09002 * 109.50063 * 177.59340 * 16 15 14 34 34 H 1.09005 * 109.46413 * 305.86027 * 17 12 11 35 35 H 1.08999 * 109.46062 * 65.83030 * 17 12 11 36 36 H 1.07996 * 120.00259 * 0.11168 * 19 18 9 37 37 H 1.08007 * 119.99847 * 180.35106 * 20 19 18 38 38 H 1.07995 * 119.99955 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.00195 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.99733 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0731 -1.2007 0.1572 9 6 1.2670 -2.4900 -0.2174 10 1 1.9552 -3.3257 -0.0900 11 7 0.1748 -2.6021 0.7586 12 7 0.6259 -3.2648 1.9716 13 6 -0.0732 -4.5417 2.1648 14 6 0.5270 -5.2769 3.3653 15 6 0.3873 -4.4029 4.6148 16 6 1.0822 -3.0607 4.3697 17 6 0.4659 -2.3898 3.1401 18 6 0.6983 -2.5159 -1.6127 19 6 -0.5483 -1.9726 -1.8612 20 6 -1.0702 -1.9967 -3.1410 21 6 -0.3461 -2.5655 -4.1721 22 6 0.9001 -3.1096 -3.9235 23 6 1.4220 -3.0853 -2.6437 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6193 -3.0798 0.3596 26 1 -1.1311 -4.3525 2.3466 27 1 0.0375 -5.1552 1.2708 28 1 1.5818 -5.4784 3.1785 29 1 -0.0024 -6.2174 3.5180 30 1 0.8521 -4.9041 5.4638 31 1 -0.6689 -4.2333 4.8245 32 1 2.1457 -3.2275 4.1986 33 1 0.9494 -2.4179 5.2399 34 1 0.9682 -1.4404 2.9543 35 1 -0.5946 -2.2108 3.3173 36 1 -1.1139 -1.5280 -1.0557 37 1 -2.0417 -1.5672 -3.3363 38 1 -0.7540 -2.5847 -5.1719 39 1 1.4656 -3.5543 -4.7289 40 1 2.3952 -3.5113 -2.4492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214889848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:01 Heat of formation + Delta-G solvation = 59.195929 kcal Electronic energy + Delta-G solvation = -20081.922609 eV Core-core repulsion = 17283.272049 eV Total energy + Delta-G solvation = -2798.650559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.44549 -37.79505 -34.57176 -32.29143 -30.75896 -30.27226 -29.83921 -28.04935 -25.90020 -23.05009 -22.40895 -21.99392 -21.25989 -19.79956 -19.16775 -16.49462 -15.78873 -15.47432 -14.77261 -14.35300 -14.16387 -14.04307 -13.79901 -13.32236 -13.15717 -12.83252 -12.53177 -12.31641 -12.10136 -11.76616 -11.65013 -11.53558 -10.87992 -10.76553 -10.70344 -10.46339 -10.33478 -10.07420 -9.98055 -9.90726 -9.64704 -9.25691 -8.48127 -8.03403 -7.81750 -7.50851 -6.73524 -5.81890 -3.94491 2.39580 2.48543 3.35399 3.42178 3.45512 4.32644 4.50173 4.88694 5.14869 5.24370 5.30749 5.38819 5.70047 5.74742 5.82938 5.86242 5.92055 5.94885 5.97575 6.07670 6.18506 6.30189 6.32393 6.38620 6.49372 6.56518 6.58587 6.71673 6.82826 6.97865 7.00983 7.09759 7.22159 7.41509 7.58785 7.87218 7.90683 7.97787 8.14885 8.27803 8.51752 9.01104 9.09354 9.69392 11.13979 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.008260 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.537275 B = 3389.115998 C = 4608.133680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.087 3.913 3 Si 0.877 3.123 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.055 0.945 9 C 0.256 3.744 10 H 0.017 0.983 11 N -0.473 5.473 12 N -0.379 5.379 13 C 0.030 3.970 14 C -0.111 4.111 15 C -0.119 4.119 16 C -0.118 4.118 17 C 0.084 3.916 18 C -0.045 4.045 19 C -0.085 4.085 20 C -0.142 4.142 21 C -0.152 4.152 22 C -0.140 4.140 23 C -0.130 4.130 24 H 0.253 0.747 25 H 0.296 0.704 26 H 0.026 0.974 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.021 0.979 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 -7.235 2.541 7.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.119 4.119 3 Si 0.706 3.294 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.149 3.851 10 H 0.035 0.965 11 N -0.194 5.194 12 N -0.193 5.193 13 C -0.099 4.099 14 C -0.150 4.150 15 C -0.156 4.156 16 C -0.157 4.157 17 C -0.044 4.044 18 C -0.048 4.048 19 C -0.103 4.103 20 C -0.160 4.160 21 C -0.170 4.170 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.063 0.937 25 H 0.112 0.888 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.039 0.961 36 H 0.174 0.826 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.408 -6.562 2.761 7.257 hybrid contribution -0.349 0.351 -0.483 0.691 sum -1.756 -6.211 2.278 6.845 Atomic orbital electron populations 1.69960 1.05568 1.25166 1.46546 1.24841 0.94563 0.98223 0.94317 0.86853 0.80249 0.84410 0.77931 1.20949 1.21443 1.20077 1.20808 0.93226 0.89897 1.49969 0.92671 1.18168 0.88306 0.95904 0.82763 0.96481 1.64862 1.06590 1.45527 1.02405 1.65062 1.52469 1.00741 1.01057 1.22510 0.95944 0.93521 0.97959 1.21532 1.01560 0.97341 0.94541 1.21568 1.00230 0.96617 0.97226 1.21656 1.00715 0.95757 0.97566 1.21797 0.97891 0.96898 0.87829 1.20633 0.93052 0.93414 0.97677 1.21756 0.96174 0.95454 0.96965 1.21147 0.99484 1.01166 0.94186 1.20817 0.95912 1.02281 0.98039 1.20812 0.96284 1.02304 0.96383 1.20910 0.99483 1.01498 0.92963 0.93690 0.88754 0.95542 0.91919 0.91397 0.92480 0.92613 0.92711 0.91449 0.92219 0.89588 0.96109 0.82580 0.87904 0.88134 0.87906 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.00 9.23 55.43 0.51 -21.49 16 2 C 0.09 2.29 5.20 -17.82 -0.09 2.20 16 3 Si 0.88 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.50 -13.32 8.86 -34.44 -0.31 -13.63 16 8 H 0.06 1.51 7.83 -52.49 -0.41 1.10 16 9 C 0.26 6.17 2.77 -70.02 -0.19 5.98 16 10 H 0.02 0.43 7.93 -51.93 -0.41 0.01 16 11 N -0.47 -10.69 4.69 -6.65 -0.03 -10.72 16 12 N -0.38 -7.66 4.69 -113.82 -0.53 -8.20 16 13 C 0.03 0.51 5.41 -3.83 -0.02 0.49 16 14 C -0.11 -1.56 6.09 -26.65 -0.16 -1.72 16 15 C -0.12 -1.59 6.00 -26.61 -0.16 -1.75 16 16 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 17 C 0.08 1.63 5.90 -3.83 -0.02 1.61 16 18 C -0.05 -1.04 4.65 -104.62 -0.49 -1.53 16 19 C -0.08 -1.90 7.60 -39.58 -0.30 -2.20 16 20 C -0.14 -2.83 10.05 -39.58 -0.40 -3.22 16 21 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 22 C -0.14 -2.63 10.05 -39.58 -0.40 -3.03 16 23 C -0.13 -2.72 9.69 -39.58 -0.38 -3.10 16 24 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 25 H 0.30 6.50 6.81 -174.66 -1.19 5.31 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.16 3.75 5.50 -52.49 -0.29 3.46 16 37 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 38 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -26.77 317.93 -11.12 -37.89 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.35 Total: 6.88 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -3.48 Total: -25.12 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -0.05 Total: -40.41 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.77 -11.12 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214889848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.090 kcal (2) G-P(sol) polarization free energy of solvation -26.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds