Wall clock time and date at job start Mon Mar 30 2020 06:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99770 * 2 1 4 4 H 1.48499 * 109.47405 * 267.01298 * 3 2 1 5 5 H 1.48502 * 109.47423 * 27.01293 * 3 2 1 6 6 H 1.48502 * 109.47317 * 147.01381 * 3 2 1 7 7 C 1.37876 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99811 * 359.19624 * 7 2 1 9 9 C 1.50694 * 120.00188 * 179.20215 * 7 2 1 10 10 H 1.08999 * 109.47051 * 355.30984 * 9 7 2 11 11 N 1.46898 * 109.47244 * 235.30975 * 9 7 2 12 12 N 1.45395 * 111.00042 * 1.67195 * 11 9 7 13 13 C 1.46855 * 111.00145 * 238.87578 * 12 11 9 14 14 C 1.53039 * 109.52023 * 174.15966 * 13 12 11 15 15 C 1.53117 * 109.27971 * 59.18148 * 14 13 12 16 16 C 1.53120 * 109.15797 * 302.33932 * 15 14 13 17 17 C 1.46845 * 110.99952 * 114.66195 * 12 11 9 18 18 C 1.50703 * 109.47158 * 115.30609 * 9 7 2 19 19 C 1.38242 * 119.99936 * 72.38720 * 18 9 7 20 20 C 1.38233 * 119.99934 * 179.80845 * 19 18 9 21 21 C 1.38233 * 120.00242 * 0.39890 * 20 19 18 22 22 C 1.38240 * 119.99745 * 359.85206 * 21 20 19 23 23 C 1.38237 * 120.00304 * 359.95701 * 22 21 20 24 24 H 0.97005 * 120.00429 * 359.97438 * 1 2 3 25 25 H 1.00902 * 110.99861 * 237.72160 * 11 9 7 26 26 H 1.09004 * 109.45924 * 294.17183 * 13 12 11 27 27 H 1.08996 * 109.46130 * 54.14509 * 13 12 11 28 28 H 1.08997 * 109.50626 * 299.23750 * 14 13 12 29 29 H 1.09001 * 109.49873 * 179.11498 * 14 13 12 30 30 H 1.09001 * 109.52601 * 182.44163 * 15 14 13 31 31 H 1.09001 * 109.52709 * 62.24294 * 15 14 13 32 32 H 1.08995 * 109.50903 * 297.71708 * 16 15 14 33 33 H 1.08998 * 109.50427 * 177.59494 * 16 15 14 34 34 H 1.09000 * 109.46510 * 305.85749 * 17 12 11 35 35 H 1.09002 * 109.45914 * 65.82614 * 17 12 11 36 36 H 1.08000 * 119.99552 * 359.97438 * 19 18 9 37 37 H 1.07998 * 119.99818 * 180.22348 * 20 19 18 38 38 H 1.07989 * 120.00167 * 179.83103 * 21 20 19 39 39 H 1.08003 * 120.00198 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.00559 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5597 2.0100 -1.3981 5 1 1.4163 2.6701 0.6359 6 1 3.5136 1.4593 0.7622 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 0.0122 9 6 3.5114 -1.1940 -0.0187 10 1 3.8736 -0.1704 -0.1138 11 7 3.9873 -1.9897 -1.1581 12 7 2.8723 -2.4993 -1.9398 13 6 2.8990 -3.9663 -2.0004 14 6 1.6374 -4.4721 -2.7036 15 6 1.5766 -3.8854 -4.1166 16 6 1.5987 -2.3570 -4.0274 17 6 2.8615 -1.9124 -3.2858 18 6 4.0292 -1.7930 1.2636 19 6 3.9207 -3.1534 1.4843 20 6 4.3993 -3.7033 2.6587 21 6 4.9789 -2.8919 3.6161 22 6 5.0827 -1.5308 3.3976 23 6 4.6077 -0.9813 2.2214 24 1 -0.4851 0.8401 0.0004 25 1 4.5859 -2.7411 -0.8496 26 1 3.7792 -4.2909 -2.5555 27 1 2.9380 -4.3709 -0.9890 28 1 0.7573 -4.1596 -2.1416 29 1 1.6650 -5.5602 -2.7624 30 1 0.6576 -4.2083 -4.6059 31 1 2.4366 -4.2293 -4.6912 32 1 0.7181 -2.0111 -3.4862 33 1 1.5987 -1.9338 -5.0319 34 1 2.8732 -0.8252 -3.2081 35 1 3.7418 -2.2466 -3.8348 36 1 3.4645 -3.7867 0.7379 37 1 4.3178 -4.7666 2.8296 38 1 5.3503 -3.3212 4.5347 39 1 5.5352 -0.8968 4.1457 40 1 4.6884 0.0820 2.0509 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214889894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:04 Heat of formation + Delta-G solvation = 59.440481 kcal Electronic energy + Delta-G solvation = -20221.697643 eV Core-core repulsion = 17423.057688 eV Total energy + Delta-G solvation = -2798.639955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.86704 -37.86250 -34.79252 -32.27222 -31.22258 -30.37764 -30.15908 -28.41790 -26.13082 -23.13255 -22.57212 -22.06330 -21.69282 -19.67437 -19.18477 -16.94427 -16.35686 -15.80391 -14.70429 -14.49885 -14.35262 -14.20833 -13.93250 -13.44559 -13.22158 -12.83673 -12.74164 -12.64210 -12.46029 -12.06356 -11.89302 -11.65866 -11.02118 -10.88115 -10.68568 -10.58039 -10.31791 -10.12194 -9.94850 -9.82996 -9.79561 -9.32256 -8.81947 -8.32635 -8.28490 -7.84171 -6.87701 -5.98413 -3.90576 2.01512 2.06030 3.32547 3.38899 3.40994 4.16133 4.46249 4.50600 5.16362 5.26184 5.33017 5.38851 5.46474 5.48515 5.61977 5.73607 5.83109 5.87237 5.91379 6.03161 6.08718 6.12572 6.21656 6.22589 6.32437 6.43226 6.49876 6.53891 6.64846 6.67248 6.81761 6.86261 6.92157 7.06874 7.09818 7.46221 7.53416 7.68951 7.78712 8.10107 8.46071 8.77682 9.13947 9.62605 11.14308 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.009232 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.103967 B = 3032.187206 C = 4218.528553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.207 3.793 10 H 0.059 0.941 11 N -0.531 5.531 12 N -0.333 5.333 13 C 0.035 3.965 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.116 4.116 17 C 0.079 3.921 18 C -0.052 4.052 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.120 4.120 23 C -0.128 4.128 24 H 0.261 0.739 25 H 0.313 0.687 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.016 0.984 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 -6.455 -2.057 9.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.492 4.492 8 H 0.101 0.899 9 C 0.099 3.901 10 H 0.076 0.924 11 N -0.252 5.252 12 N -0.147 5.147 13 C -0.094 4.094 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.155 4.155 17 C -0.050 4.050 18 C -0.054 4.054 19 C -0.140 4.140 20 C -0.140 4.140 21 C -0.168 4.168 22 C -0.138 4.138 23 C -0.147 4.147 24 H 0.071 0.929 25 H 0.130 0.870 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.034 0.966 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.687 -5.621 -2.247 9.020 hybrid contribution 0.778 -0.028 0.354 0.855 sum 7.465 -5.648 -1.893 9.551 Atomic orbital electron populations 1.69874 1.06041 1.26494 1.51049 1.24974 0.94676 0.98334 0.94965 0.87004 0.79972 0.84512 0.78603 1.20270 1.21882 1.19266 1.20679 0.86705 0.94751 1.47063 0.89937 1.19043 0.96727 0.92848 0.81433 0.92388 1.64499 1.11595 1.23437 1.25636 1.65310 1.35110 1.02064 1.12187 1.22486 0.96564 0.90776 0.99611 1.21510 0.99028 0.98449 0.96012 1.21543 1.00695 0.96466 0.96710 1.21589 0.99869 0.94901 0.99153 1.21855 0.94885 1.00255 0.87975 1.21141 0.91907 0.93254 0.99144 1.20928 1.00318 0.95249 0.97547 1.20994 0.99502 0.98949 0.94522 1.20863 1.02794 0.93993 0.99133 1.21005 1.00610 0.95044 0.97176 1.21054 0.99651 0.99666 0.94284 0.92914 0.87033 0.96156 0.91578 0.90513 0.92522 0.92446 0.93054 0.90266 0.92377 0.90775 0.96632 0.86941 0.87220 0.87289 0.87144 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.96 55.43 0.77 -25.88 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 21.33 27.14 -169.99 -4.61 16.72 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.20 5.84 56.52 0.33 -5.87 16 7 C -0.45 -12.05 7.32 -34.44 -0.25 -12.30 16 8 H 0.08 2.44 7.79 -52.49 -0.41 2.03 16 9 C 0.21 4.75 3.14 -70.02 -0.22 4.53 16 10 H 0.06 1.40 4.38 -51.93 -0.23 1.17 16 11 N -0.53 -10.98 6.94 -6.65 -0.05 -11.02 16 12 N -0.33 -6.71 2.81 -113.81 -0.32 -7.03 16 13 C 0.04 0.60 5.40 -3.83 -0.02 0.58 16 14 C -0.11 -1.72 6.09 -26.65 -0.16 -1.88 16 15 C -0.12 -1.68 6.00 -26.61 -0.16 -1.84 16 16 C -0.12 -1.93 6.09 -26.65 -0.16 -2.09 16 17 C 0.08 1.49 5.90 -3.83 -0.02 1.46 16 18 C -0.05 -1.10 4.74 -104.62 -0.50 -1.59 16 19 C -0.12 -2.33 8.63 -39.58 -0.34 -2.68 16 20 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 21 C -0.15 -2.39 10.05 -39.58 -0.40 -2.79 16 22 C -0.12 -2.04 10.05 -39.58 -0.40 -2.44 16 23 C -0.13 -2.52 9.67 -39.58 -0.38 -2.90 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.31 5.93 6.52 -174.66 -1.14 4.79 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 1.14 6.25 -51.93 -0.32 0.81 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.11 2.13 5.86 -52.49 -0.31 1.82 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 40 H 0.11 2.24 7.32 -52.49 -0.38 1.85 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -28.93 313.37 -10.06 -38.99 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.07 Total: 7.96 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.51 Total: -24.45 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.41 Total: -43.94 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.61 Total: 16.72 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.93 -10.06 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214889894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.430 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds