Wall clock time and date at job start Mon Mar 30 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99770 * 2 1 4 4 H 1.48499 * 109.47405 * 267.01298 * 3 2 1 5 5 H 1.48502 * 109.47423 * 27.01293 * 3 2 1 6 6 H 1.48502 * 109.47317 * 147.01381 * 3 2 1 7 7 C 1.37876 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99811 * 359.19624 * 7 2 1 9 9 C 1.50694 * 120.00188 * 179.20215 * 7 2 1 10 10 H 1.08999 * 109.47051 * 355.30984 * 9 7 2 11 11 N 1.46898 * 109.47244 * 235.30975 * 9 7 2 12 12 N 1.45395 * 111.00042 * 1.67195 * 11 9 7 13 13 C 1.46855 * 111.00145 * 238.87578 * 12 11 9 14 14 C 1.53039 * 109.52023 * 174.15966 * 13 12 11 15 15 C 1.53117 * 109.27971 * 59.18148 * 14 13 12 16 16 C 1.53120 * 109.15797 * 302.33932 * 15 14 13 17 17 C 1.46845 * 110.99952 * 114.66195 * 12 11 9 18 18 C 1.50703 * 109.47158 * 115.30609 * 9 7 2 19 19 C 1.38242 * 119.99936 * 72.38720 * 18 9 7 20 20 C 1.38233 * 119.99934 * 179.80845 * 19 18 9 21 21 C 1.38233 * 120.00242 * 0.39890 * 20 19 18 22 22 C 1.38240 * 119.99745 * 359.85206 * 21 20 19 23 23 C 1.38237 * 120.00304 * 359.95701 * 22 21 20 24 24 H 0.97005 * 120.00429 * 359.97438 * 1 2 3 25 25 H 1.00902 * 110.99861 * 237.72160 * 11 9 7 26 26 H 1.09004 * 109.45924 * 294.17183 * 13 12 11 27 27 H 1.08996 * 109.46130 * 54.14509 * 13 12 11 28 28 H 1.08997 * 109.50626 * 299.23750 * 14 13 12 29 29 H 1.09001 * 109.49873 * 179.11498 * 14 13 12 30 30 H 1.09001 * 109.52601 * 182.44163 * 15 14 13 31 31 H 1.09001 * 109.52709 * 62.24294 * 15 14 13 32 32 H 1.08995 * 109.50903 * 297.71708 * 16 15 14 33 33 H 1.08998 * 109.50427 * 177.59494 * 16 15 14 34 34 H 1.09000 * 109.46510 * 305.85749 * 17 12 11 35 35 H 1.09002 * 109.45914 * 65.82614 * 17 12 11 36 36 H 1.08000 * 119.99552 * 359.97438 * 19 18 9 37 37 H 1.07998 * 119.99818 * 180.22348 * 20 19 18 38 38 H 1.07989 * 120.00167 * 179.83103 * 21 20 19 39 39 H 1.08003 * 120.00198 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.00559 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5597 2.0100 -1.3981 5 1 1.4163 2.6701 0.6359 6 1 3.5136 1.4593 0.7622 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 0.0122 9 6 3.5114 -1.1940 -0.0187 10 1 3.8736 -0.1704 -0.1138 11 7 3.9873 -1.9897 -1.1581 12 7 2.8723 -2.4993 -1.9398 13 6 2.8990 -3.9663 -2.0004 14 6 1.6374 -4.4721 -2.7036 15 6 1.5766 -3.8854 -4.1166 16 6 1.5987 -2.3570 -4.0274 17 6 2.8615 -1.9124 -3.2858 18 6 4.0292 -1.7930 1.2636 19 6 3.9207 -3.1534 1.4843 20 6 4.3993 -3.7033 2.6587 21 6 4.9789 -2.8919 3.6161 22 6 5.0827 -1.5308 3.3976 23 6 4.6077 -0.9813 2.2214 24 1 -0.4851 0.8401 0.0004 25 1 4.5859 -2.7411 -0.8496 26 1 3.7792 -4.2909 -2.5555 27 1 2.9380 -4.3709 -0.9890 28 1 0.7573 -4.1596 -2.1416 29 1 1.6650 -5.5602 -2.7624 30 1 0.6576 -4.2083 -4.6059 31 1 2.4366 -4.2293 -4.6912 32 1 0.7181 -2.0111 -3.4862 33 1 1.5987 -1.9338 -5.0319 34 1 2.8732 -0.8252 -3.2081 35 1 3.7418 -2.2466 -3.8348 36 1 3.4645 -3.7867 0.7379 37 1 4.3178 -4.7666 2.8296 38 1 5.3503 -3.3212 4.5347 39 1 5.5352 -0.8968 4.1457 40 1 4.6884 0.0820 2.0509 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214889894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:03 Heat of formation + Delta-G solvation = 43.032413 kcal Electronic energy + Delta-G solvation = -20222.409150 eV Core-core repulsion = 17423.057688 eV Total energy + Delta-G solvation = -2799.351462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35598 -39.27313 -36.39913 -34.20268 -32.80583 -31.77559 -31.54873 -29.92284 -28.01233 -24.72957 -23.99717 -23.50234 -23.12620 -21.34541 -20.57763 -18.92734 -17.82411 -17.34424 -16.35092 -16.11559 -15.91339 -15.67404 -15.34937 -15.00108 -14.64801 -14.47312 -14.28174 -14.14955 -13.91972 -13.63757 -13.47022 -13.03718 -12.84440 -12.57828 -12.12765 -12.07212 -11.77270 -11.65336 -11.56409 -11.45314 -11.28669 -11.16879 -10.73542 -10.08100 -9.70317 -9.35599 -8.48372 -8.12905 -6.07151 0.60905 0.63637 1.34284 1.36537 1.43060 2.40937 2.63699 3.03718 3.24982 3.87520 3.98518 4.10048 4.12415 4.20058 4.29463 4.34427 4.36737 4.47283 4.51241 4.62965 4.71084 4.74378 4.80601 4.91558 4.97777 5.02361 5.04520 5.16866 5.25874 5.28171 5.30666 5.39131 5.52517 5.63705 5.68529 5.69997 5.91947 6.19766 6.27450 6.42192 6.49602 6.87499 7.15552 7.48687 9.03156 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.009232 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.103967 B = 3032.187206 C = 4218.528553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.015 3.985 3 Si 0.924 3.076 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.247 1.247 7 C -0.432 4.432 8 H 0.041 0.959 9 C 0.213 3.787 10 H 0.045 0.955 11 N -0.530 5.530 12 N -0.363 5.363 13 C 0.037 3.963 14 C -0.109 4.109 15 C -0.109 4.109 16 C -0.113 4.113 17 C 0.079 3.921 18 C -0.082 4.082 19 C -0.134 4.134 20 C -0.120 4.120 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.147 4.147 24 H 0.258 0.742 25 H 0.323 0.677 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.105 0.895 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.547 -8.013 -1.449 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.182 4.182 3 Si 0.751 3.249 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.171 1.171 7 C -0.471 4.471 8 H 0.060 0.940 9 C 0.105 3.895 10 H 0.062 0.938 11 N -0.250 5.250 12 N -0.178 5.178 13 C -0.092 4.092 14 C -0.147 4.147 15 C -0.147 4.147 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.084 4.084 19 C -0.153 4.153 20 C -0.138 4.138 21 C -0.156 4.156 22 C -0.136 4.136 23 C -0.166 4.166 24 H 0.067 0.933 25 H 0.141 0.859 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.123 0.877 37 H 0.159 0.841 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.092 -7.195 -1.636 11.710 hybrid contribution 0.121 0.293 0.212 0.381 sum 9.213 -6.903 -1.423 11.600 Atomic orbital electron populations 1.70024 1.07675 1.26926 1.54354 1.25638 0.95260 1.01622 0.95646 0.86117 0.79509 0.80623 0.78630 1.20386 1.22137 1.17122 1.20670 0.88805 0.92745 1.44910 0.94041 1.18814 0.94079 0.93106 0.83524 0.93753 1.64287 1.12016 1.24104 1.24619 1.65226 1.35213 1.04287 1.13040 1.22516 0.98154 0.88679 0.99873 1.21512 0.96688 1.00380 0.96165 1.21518 1.02694 0.94197 0.96249 1.21560 0.96979 0.97103 0.99490 1.21845 0.96726 0.98477 0.87880 1.20938 0.94509 0.94468 0.98450 1.20980 1.00963 0.94506 0.98822 1.21367 0.98227 1.00777 0.93402 1.21361 1.00778 0.93474 1.00003 1.21375 0.99538 0.96146 0.96549 1.21181 1.00625 0.99438 0.95368 0.93313 0.85933 0.94166 0.92275 0.93830 0.89321 0.90582 0.90723 0.94097 0.89879 0.93865 0.94787 0.87672 0.84125 0.83287 0.83957 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.01 0.85 5.47 84.66 0.46 1.31 16 3 Si 0.92 45.55 27.14 68.60 1.86 47.41 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.25 -11.21 5.84 99.48 0.58 -10.63 16 7 C -0.43 -24.06 7.32 25.60 0.19 -23.87 16 8 H 0.04 2.61 7.79 -2.91 -0.02 2.59 16 9 C 0.21 10.01 3.14 43.42 0.14 10.14 16 10 H 0.04 2.19 4.38 -2.39 -0.01 2.18 16 11 N -0.53 -22.21 6.94 -174.96 -1.21 -23.43 16 12 N -0.36 -14.98 2.81 -513.98 -1.45 -16.43 16 13 C 0.04 1.23 5.40 86.32 0.47 1.70 16 14 C -0.11 -3.28 6.09 30.65 0.19 -3.09 16 15 C -0.11 -2.94 6.00 30.67 0.18 -2.75 16 16 C -0.11 -3.74 6.09 30.65 0.19 -3.55 16 17 C 0.08 3.02 5.90 86.33 0.51 3.53 16 18 C -0.08 -3.42 4.74 -19.86 -0.09 -3.51 16 19 C -0.13 -5.03 8.63 22.27 0.19 -4.84 16 20 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 21 C -0.14 -3.83 10.05 22.27 0.22 -3.60 16 22 C -0.12 -3.62 10.05 22.27 0.22 -3.39 16 23 C -0.15 -5.63 9.67 22.27 0.22 -5.41 16 24 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 25 H 0.32 12.24 6.52 -204.85 -1.34 10.91 16 26 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.06 2.04 6.25 -2.39 -0.01 2.03 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 4.01 5.86 -2.91 -0.02 3.99 16 37 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.15 2.99 8.06 -2.92 -0.02 2.97 16 39 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.11 4.16 7.32 -2.91 -0.02 4.14 16 Total: -1.00 -66.67 313.37 2.36 -64.30 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.44 Total: 28.11 kcal Atomic # 6 Polarization: -44.06 SS G_CDS: 3.30 Total: -40.76 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -2.36 Total: -99.07 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.86 Total: 47.41 kcal Total: -66.67 2.36 -64.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214889894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.336 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds