Wall clock time and date at job start Mon Mar 30 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00357 * 2 1 4 4 H 1.48499 * 109.46812 * 240.00213 * 3 2 1 5 5 H 1.48493 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46876 * 120.00301 * 3 2 1 7 7 C 1.37886 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99740 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46918 * 179.97438 * 9 7 2 11 11 C 1.39674 * 120.00006 * 89.99982 * 10 9 7 12 12 C 1.38912 * 120.07272 * 174.54598 * 11 10 9 13 13 C 1.38107 * 119.92030 * 180.29585 * 12 11 10 14 14 C 1.38283 * 120.07473 * 359.44841 * 13 12 11 15 15 C 1.38281 * 120.15230 * 0.27625 * 14 13 12 16 16 C 1.38111 * 120.07413 * 0.02562 * 15 14 13 17 17 C 1.46501 * 120.00051 * 270.00234 * 10 9 7 18 18 H 1.08997 * 110.01547 * 183.50210 * 17 10 9 19 19 C 1.54264 * 110.03362 * 62.05825 * 17 10 9 20 20 C 1.54889 * 104.19698 * 217.10811 * 19 17 10 21 21 C 1.54889 * 102.75025 * 37.94103 * 20 19 17 22 22 H 1.09001 * 110.59657 * 80.79231 * 21 20 19 23 23 N 1.46896 * 110.49078 * 203.38194 * 21 20 19 24 24 C 1.53874 * 110.03197 * 304.89105 * 17 10 9 25 25 H 0.96996 * 119.99080 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47097 * 60.00238 * 9 7 2 27 27 H 1.08994 * 109.47252 * 299.99807 * 9 7 2 28 28 H 1.07997 * 120.04355 * 0.02595 * 12 11 10 29 29 H 1.08002 * 119.95862 * 179.72881 * 13 12 11 30 30 H 1.08000 * 119.92384 * 180.29473 * 14 13 12 31 31 H 1.07996 * 119.96627 * 180.02562 * 15 14 13 32 32 H 1.07998 * 120.03722 * 180.02562 * 16 15 14 33 33 H 1.09003 * 110.48646 * 335.78163 * 19 17 10 34 34 H 1.09005 * 110.48675 * 98.42922 * 19 17 10 35 35 H 1.09008 * 110.75550 * 279.62982 * 20 19 17 36 36 H 1.09002 * 110.91853 * 156.33069 * 20 19 17 37 37 H 1.00901 * 110.99858 * 294.77878 * 23 21 20 38 38 H 1.00901 * 111.00218 * 58.72547 * 23 21 20 39 39 H 1.08998 * 110.03654 * 238.57359 * 24 17 10 40 40 H 1.09005 * 110.03154 * 0.02562 * 24 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0046 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0018 11 6 2.6576 -4.1442 1.2073 12 6 3.4703 -5.2707 1.2106 13 6 3.9131 -5.7971 2.4082 14 6 3.5577 -5.1974 3.6024 15 6 2.7535 -4.0724 3.6024 16 6 2.3020 -3.5445 2.4087 17 6 2.6779 -4.1690 -1.2711 18 1 3.3269 -5.0244 -1.0840 19 6 3.4400 -3.0905 -2.0684 20 6 3.0520 -3.3629 -3.5429 21 6 1.5588 -3.7605 -3.4356 22 1 0.9306 -2.8734 -3.3557 23 7 1.1578 -4.5705 -4.5936 24 6 1.4818 -4.5951 -2.1404 25 1 -0.4848 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6247 -2.5572 0.8896 28 1 3.7520 -5.7370 0.2781 29 1 4.5414 -6.6756 2.4117 30 1 3.9093 -5.6083 4.5372 31 1 2.4781 -3.6062 4.5368 32 1 1.6743 -2.6656 2.4094 33 1 3.1173 -2.0939 -1.7669 34 1 4.5155 -3.2025 -1.9300 35 1 3.6416 -4.1832 -3.9524 36 1 3.1699 -2.4644 -4.1488 37 1 1.2055 -4.0318 -5.4455 38 1 1.7193 -5.4060 -4.6623 39 1 1.5508 -5.6571 -2.3758 40 1 0.5479 -4.3876 -1.6180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223113263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:22 Heat of formation + Delta-G solvation = 26.036146 kcal Electronic energy + Delta-G solvation = -19993.435896 eV Core-core repulsion = 17193.347420 eV Total energy + Delta-G solvation = -2800.088475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.32348 -37.82297 -35.01608 -32.76061 -31.66705 -30.30483 -28.97930 -28.17111 -26.68097 -25.15478 -22.90701 -21.70138 -20.57922 -20.17979 -18.69398 -17.24348 -16.47749 -16.07135 -15.24992 -14.98591 -14.84736 -14.21133 -13.65698 -13.50374 -13.08482 -12.99773 -12.84519 -12.41892 -12.06118 -11.95274 -11.50595 -11.32281 -11.25881 -10.95195 -10.79425 -10.73306 -10.60191 -10.41768 -10.25035 -10.19221 -9.86686 -9.41615 -8.88438 -8.50343 -8.46397 -8.26022 -6.46969 -6.02251 -4.16701 2.11195 2.33339 3.25667 3.31100 3.33946 4.06947 4.38541 4.56198 4.72268 4.97943 5.12757 5.19673 5.41867 5.51863 5.55528 5.70755 5.82176 5.86246 5.93828 5.97182 6.01115 6.12607 6.16610 6.33370 6.35502 6.43728 6.58081 6.67170 6.70824 6.97381 7.10787 7.13025 7.20690 7.29239 7.32604 7.38064 7.58952 7.64418 7.80274 8.16626 8.31008 8.54220 8.91269 9.48653 10.94645 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.009967 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.336305 B = 2808.696247 C = 4659.735831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.250 3.750 10 N -0.605 5.605 11 C 0.239 3.761 12 C -0.223 4.223 13 C -0.079 4.079 14 C -0.206 4.206 15 C -0.077 4.077 16 C -0.186 4.186 17 C 0.151 3.849 18 H 0.077 0.923 19 C -0.146 4.146 20 C -0.154 4.154 21 C 0.089 3.911 22 H 0.092 0.908 23 N -0.844 5.844 24 C -0.124 4.124 25 H 0.264 0.736 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.337 0.663 38 H 0.334 0.666 39 H 0.062 0.938 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 -8.818 -2.952 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.079 0.921 9 C 0.130 3.870 10 N -0.310 5.310 11 C 0.133 3.867 12 C -0.246 4.246 13 C -0.098 4.098 14 C -0.226 4.226 15 C -0.096 4.096 16 C -0.209 4.209 17 C 0.046 3.954 18 H 0.095 0.905 19 C -0.185 4.185 20 C -0.194 4.194 21 C -0.023 4.023 22 H 0.110 0.890 23 N -0.371 5.371 24 C -0.163 4.163 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.151 0.849 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.081 0.919 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.420 -8.651 -2.792 10.108 hybrid contribution 1.537 1.221 -0.356 1.995 sum 5.957 -7.430 -3.148 10.030 Atomic orbital electron populations 1.69921 1.05924 1.27152 1.50031 1.24952 0.94798 0.99061 0.95133 0.86665 0.79625 0.83094 0.78736 1.20288 1.21251 1.20159 1.21530 0.93463 0.90607 1.51031 0.92117 1.19213 0.87351 0.82387 0.98007 1.47243 1.47094 1.35838 1.00800 1.17949 0.91152 0.90737 0.86892 1.20599 1.06533 0.99592 0.97884 1.20665 0.98366 0.98413 0.92335 1.20649 1.05175 0.99678 0.97116 1.20832 0.96357 0.95329 0.97118 1.20940 1.06194 1.02897 0.90836 1.21478 0.94284 0.95408 0.84273 0.90491 1.23007 0.98930 1.03449 0.93104 1.23224 0.97692 1.00531 0.98001 1.22312 0.93737 0.96154 0.90047 0.88983 1.58900 1.62045 1.10053 1.06140 1.22519 0.99909 0.98753 0.95151 0.92629 0.94715 0.95016 0.87005 0.87510 0.87727 0.87177 0.84942 0.86838 0.92808 0.92634 0.91970 0.85099 0.85374 0.91932 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 2 C 0.06 1.68 5.46 -17.81 -0.10 1.58 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -13.62 7.42 -34.43 -0.26 -13.88 16 8 H 0.06 1.60 7.19 -52.49 -0.38 1.23 16 9 C 0.25 5.99 4.20 -5.19 -0.02 5.97 16 10 N -0.60 -12.40 2.53 -164.28 -0.42 -12.81 16 11 C 0.24 4.81 6.54 -83.79 -0.55 4.27 16 12 C -0.22 -3.93 9.31 -39.38 -0.37 -4.30 16 13 C -0.08 -1.27 10.04 -39.61 -0.40 -1.66 16 14 C -0.21 -3.32 10.04 -39.55 -0.40 -3.72 16 15 C -0.08 -1.37 10.04 -39.61 -0.40 -1.76 16 16 C -0.19 -3.80 9.16 -39.38 -0.36 -4.16 16 17 C 0.15 2.63 3.25 -66.81 -0.22 2.41 16 18 H 0.08 1.24 5.36 -51.93 -0.28 0.96 16 19 C -0.15 -2.54 6.42 -25.07 -0.16 -2.70 16 20 C -0.15 -2.23 6.56 -24.74 -0.16 -2.40 16 21 C 0.09 1.36 4.01 -66.05 -0.26 1.10 16 22 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 23 N -0.84 -10.71 9.31 -3.26 -0.03 -10.74 16 24 C -0.12 -2.03 5.68 -25.61 -0.15 -2.18 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.03 0.88 6.56 -51.93 -0.34 0.54 16 27 H 0.03 0.83 6.46 -51.93 -0.34 0.49 16 28 H 0.11 1.79 5.75 -52.49 -0.30 1.48 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.10 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.13 2.97 6.26 -52.49 -0.33 2.65 16 33 H 0.11 2.39 4.93 -51.93 -0.26 2.13 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.70 8.13 -51.92 -0.42 0.28 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.34 3.73 9.08 -39.29 -0.36 3.37 16 38 H 0.33 3.67 8.85 -39.29 -0.35 3.32 16 39 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 40 H 0.08 1.47 6.67 -51.93 -0.35 1.12 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -27.17 314.17 -9.56 -36.73 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.77 Total: 11.85 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -3.79 Total: -21.44 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.29 Total: -47.70 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.17 -9.56 -36.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223113263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.765 kcal (2) G-P(sol) polarization free energy of solvation -27.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds