Wall clock time and date at job start Mon Mar 30 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00357 * 2 1 4 4 H 1.48499 * 109.46812 * 240.00213 * 3 2 1 5 5 H 1.48493 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46876 * 120.00301 * 3 2 1 7 7 C 1.37886 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99740 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46918 * 179.97438 * 9 7 2 11 11 C 1.39674 * 120.00006 * 89.99982 * 10 9 7 12 12 C 1.38912 * 120.07272 * 174.54598 * 11 10 9 13 13 C 1.38107 * 119.92030 * 180.29585 * 12 11 10 14 14 C 1.38283 * 120.07473 * 359.44841 * 13 12 11 15 15 C 1.38281 * 120.15230 * 0.27625 * 14 13 12 16 16 C 1.38111 * 120.07413 * 0.02562 * 15 14 13 17 17 C 1.46501 * 120.00051 * 270.00234 * 10 9 7 18 18 H 1.08997 * 110.01547 * 183.50210 * 17 10 9 19 19 C 1.54264 * 110.03362 * 62.05825 * 17 10 9 20 20 C 1.54889 * 104.19698 * 217.10811 * 19 17 10 21 21 C 1.54889 * 102.75025 * 37.94103 * 20 19 17 22 22 H 1.09001 * 110.59657 * 80.79231 * 21 20 19 23 23 N 1.46896 * 110.49078 * 203.38194 * 21 20 19 24 24 C 1.53874 * 110.03197 * 304.89105 * 17 10 9 25 25 H 0.96996 * 119.99080 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47097 * 60.00238 * 9 7 2 27 27 H 1.08994 * 109.47252 * 299.99807 * 9 7 2 28 28 H 1.07997 * 120.04355 * 0.02595 * 12 11 10 29 29 H 1.08002 * 119.95862 * 179.72881 * 13 12 11 30 30 H 1.08000 * 119.92384 * 180.29473 * 14 13 12 31 31 H 1.07996 * 119.96627 * 180.02562 * 15 14 13 32 32 H 1.07998 * 120.03722 * 180.02562 * 16 15 14 33 33 H 1.09003 * 110.48646 * 335.78163 * 19 17 10 34 34 H 1.09005 * 110.48675 * 98.42922 * 19 17 10 35 35 H 1.09008 * 110.75550 * 279.62982 * 20 19 17 36 36 H 1.09002 * 110.91853 * 156.33069 * 20 19 17 37 37 H 1.00901 * 110.99858 * 294.77878 * 23 21 20 38 38 H 1.00901 * 111.00218 * 58.72547 * 23 21 20 39 39 H 1.08998 * 110.03654 * 238.57359 * 24 17 10 40 40 H 1.09005 * 110.03154 * 0.02562 * 24 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0046 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0018 11 6 2.6576 -4.1442 1.2073 12 6 3.4703 -5.2707 1.2106 13 6 3.9131 -5.7971 2.4082 14 6 3.5577 -5.1974 3.6024 15 6 2.7535 -4.0724 3.6024 16 6 2.3020 -3.5445 2.4087 17 6 2.6779 -4.1690 -1.2711 18 1 3.3269 -5.0244 -1.0840 19 6 3.4400 -3.0905 -2.0684 20 6 3.0520 -3.3629 -3.5429 21 6 1.5588 -3.7605 -3.4356 22 1 0.9306 -2.8734 -3.3557 23 7 1.1578 -4.5705 -4.5936 24 6 1.4818 -4.5951 -2.1404 25 1 -0.4848 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6247 -2.5572 0.8896 28 1 3.7520 -5.7370 0.2781 29 1 4.5414 -6.6756 2.4117 30 1 3.9093 -5.6083 4.5372 31 1 2.4781 -3.6062 4.5368 32 1 1.6743 -2.6656 2.4094 33 1 3.1173 -2.0939 -1.7669 34 1 4.5155 -3.2025 -1.9300 35 1 3.6416 -4.1832 -3.9524 36 1 3.1699 -2.4644 -4.1488 37 1 1.2055 -4.0318 -5.4455 38 1 1.7193 -5.4060 -4.6623 39 1 1.5508 -5.6571 -2.3758 40 1 0.5479 -4.3876 -1.6180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223113263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:22 Heat of formation + Delta-G solvation = 10.393601 kcal Electronic energy + Delta-G solvation = -19994.114207 eV Core-core repulsion = 17193.347420 eV Total energy + Delta-G solvation = -2800.766787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76116 -39.15365 -36.50614 -34.70264 -32.95100 -31.73437 -30.51290 -29.68675 -28.18456 -26.66752 -24.66062 -23.12365 -22.04632 -21.44754 -20.13550 -18.72093 -18.50450 -17.33417 -16.80188 -16.43168 -16.23743 -15.83618 -15.00610 -14.83514 -14.77461 -14.36862 -14.29591 -13.95921 -13.67094 -13.22085 -13.12116 -13.02046 -12.74326 -12.63439 -12.51598 -12.24793 -12.01641 -11.98654 -11.73709 -11.64969 -11.53909 -11.01962 -10.59050 -10.45916 -9.65893 -9.53549 -8.32591 -7.78564 -6.29579 0.71138 0.93383 1.36108 1.37506 1.45141 2.34216 2.59444 3.09952 3.17778 3.55970 3.68090 3.85508 4.09218 4.25710 4.31583 4.38430 4.50922 4.56508 4.61238 4.65172 4.76495 4.78244 4.84748 4.92133 4.94807 5.09953 5.16247 5.21256 5.34681 5.36517 5.40558 5.59372 5.65040 5.73985 5.79293 5.90536 6.13738 6.25951 6.27167 6.56748 6.69116 6.89541 7.01909 7.39748 8.87310 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.009967 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.336305 B = 2808.696247 C = 4659.735831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.274 3.726 10 N -0.614 5.614 11 C 0.211 3.789 12 C -0.222 4.222 13 C -0.072 4.072 14 C -0.198 4.198 15 C -0.082 4.082 16 C -0.220 4.220 17 C 0.149 3.851 18 H 0.101 0.899 19 C -0.147 4.147 20 C -0.140 4.140 21 C 0.096 3.904 22 H 0.054 0.946 23 N -0.842 5.842 24 C -0.119 4.119 25 H 0.264 0.736 26 H 0.013 0.987 27 H -0.001 1.001 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.348 0.652 38 H 0.349 0.651 39 H 0.087 0.913 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -10.935 -3.275 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.320 5.320 11 C 0.106 3.894 12 C -0.244 4.244 13 C -0.091 4.091 14 C -0.218 4.218 15 C -0.101 4.101 16 C -0.243 4.243 17 C 0.045 3.955 18 H 0.119 0.881 19 C -0.186 4.186 20 C -0.180 4.180 21 C -0.016 4.016 22 H 0.072 0.928 23 N -0.373 5.373 24 C -0.158 4.158 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.017 0.983 28 H 0.150 0.850 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.106 0.894 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.994 -10.797 -3.119 13.237 hybrid contribution 0.768 1.771 -0.172 1.938 sum 7.762 -9.025 -3.291 12.350 Atomic orbital electron populations 1.70039 1.07301 1.27806 1.51470 1.25701 0.95526 1.02285 0.95065 0.85712 0.78463 0.79328 0.78826 1.19403 1.20818 1.20048 1.21677 0.92990 0.91606 1.49842 0.92964 1.18609 0.87431 0.83461 0.95224 1.47077 1.47145 1.35446 1.02362 1.18255 0.92588 0.92167 0.86342 1.20867 1.05448 0.98375 0.99726 1.21155 0.97558 0.99027 0.91351 1.21077 1.03471 0.98349 0.98911 1.21076 0.96330 0.96045 0.96623 1.20848 1.07707 1.02940 0.92791 1.21703 0.94862 0.95921 0.83052 0.88142 1.22910 0.99475 1.01076 0.95176 1.23148 0.97022 1.01735 0.96055 1.22024 0.93866 0.94983 0.90754 0.92795 1.58777 1.62364 1.10389 1.05725 1.22448 0.97873 1.00312 0.95139 0.92682 0.96893 0.98302 0.85003 0.83461 0.84264 0.85591 0.88769 0.91079 0.91638 0.89394 0.91878 0.83809 0.83669 0.89438 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 2 C 0.01 0.74 5.46 84.66 0.46 1.20 16 3 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.52 -28.53 7.42 25.60 0.19 -28.34 16 8 H 0.05 2.89 7.19 -2.91 -0.02 2.87 16 9 C 0.27 14.16 4.20 85.64 0.36 14.52 16 10 N -0.61 -26.17 2.53 -673.66 -1.70 -27.87 16 11 C 0.21 8.62 6.54 38.21 0.25 8.87 16 12 C -0.22 -7.29 9.31 22.40 0.21 -7.08 16 13 C -0.07 -2.03 10.04 22.25 0.22 -1.81 16 14 C -0.20 -5.73 10.04 22.29 0.22 -5.51 16 15 C -0.08 -2.84 10.04 22.25 0.22 -2.62 16 16 C -0.22 -9.37 9.16 22.40 0.21 -9.16 16 17 C 0.15 5.13 3.25 45.71 0.15 5.28 16 18 H 0.10 2.97 5.36 -2.39 -0.01 2.96 16 19 C -0.15 -5.06 6.42 31.67 0.20 -4.86 16 20 C -0.14 -3.82 6.56 31.89 0.21 -3.61 16 21 C 0.10 2.91 4.01 45.99 0.18 3.10 16 22 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 23 N -0.84 -19.93 9.31 -164.23 -1.53 -21.46 16 24 C -0.12 -3.87 5.68 31.32 0.18 -3.69 16 25 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.01 0.72 6.56 -2.39 -0.02 0.71 16 27 H 0.00 -0.06 6.46 -2.39 -0.02 -0.07 16 28 H 0.13 3.73 5.75 -2.91 -0.02 3.71 16 29 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.09 4.65 6.26 -2.91 -0.02 4.63 16 33 H 0.07 3.09 4.93 -2.39 -0.01 3.08 16 34 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.09 1.88 8.13 -2.38 -0.02 1.86 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.35 7.06 9.08 -89.69 -0.81 6.25 16 38 H 0.35 6.59 8.85 -89.69 -0.79 5.80 16 39 H 0.09 2.38 7.92 -2.39 -0.02 2.36 16 40 H 0.04 1.75 6.67 -2.38 -0.02 1.73 16 Total: -1.00 -62.72 314.17 1.80 -60.93 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.55 Total: 30.15 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 3.27 Total: -33.71 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -2.95 Total: -103.45 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -62.72 1.80 -60.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223113263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.322 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds