Wall clock time and date at job start Mon Mar 30 2020 06:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48501 * 109.47089 * 269.99693 * 3 2 1 5 5 H 1.48498 * 109.47081 * 29.99860 * 3 2 1 6 6 H 1.48503 * 109.47046 * 149.99366 * 3 2 1 7 7 C 1.37880 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99637 * 190.81851 * 7 2 1 9 9 C 1.50697 * 120.00021 * 10.54407 * 7 2 1 10 10 H 1.09000 * 109.46810 * 185.66404 * 9 7 2 11 11 C 1.50700 * 109.47157 * 65.66689 * 9 7 2 12 12 C 1.38228 * 120.00129 * 94.83142 * 11 9 7 13 13 C 1.38246 * 119.99823 * 179.80847 * 12 11 9 14 14 C 1.38233 * 119.99553 * 0.40067 * 13 12 11 15 15 C 1.38228 * 120.00403 * 359.85465 * 14 13 12 16 16 C 1.38237 * 120.00230 * 359.95681 * 15 14 13 17 17 N 1.46898 * 109.46894 * 305.66363 * 9 7 2 18 18 C 1.46852 * 110.99567 * 170.79209 * 17 9 7 19 19 C 1.53040 * 109.51977 * 185.83834 * 18 17 9 20 20 C 1.53118 * 109.27990 * 300.81871 * 19 18 17 21 21 C 1.53118 * 109.15829 * 57.65864 * 20 19 18 22 22 H 1.08998 * 109.54085 * 62.30490 * 21 20 19 23 23 N 1.46907 * 109.50168 * 182.40692 * 21 20 19 24 24 C 1.46843 * 110.99981 * 294.99715 * 17 9 7 25 25 H 0.97007 * 120.00035 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00106 * 359.97438 * 12 11 9 27 27 H 1.08002 * 119.99462 * 180.23195 * 13 12 11 28 28 H 1.08002 * 119.99389 * 179.83711 * 14 13 12 29 29 H 1.08000 * 119.99858 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.00312 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.46286 * 305.85553 * 18 17 9 32 32 H 1.08996 * 109.46332 * 65.82625 * 18 17 9 33 33 H 1.09004 * 109.49996 * 180.87533 * 19 18 17 34 34 H 1.09002 * 109.50262 * 60.76267 * 19 18 17 35 35 H 1.08993 * 109.52438 * 297.75041 * 20 19 18 36 36 H 1.09001 * 109.52450 * 177.55927 * 20 19 18 37 37 H 1.00900 * 110.99744 * 299.79923 * 23 21 20 38 38 H 1.00898 * 111.00313 * 63.75389 * 23 21 20 39 39 H 1.08996 * 109.46945 * 294.17944 * 24 17 9 40 40 H 1.08996 * 109.46435 * 54.15290 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0701 -1.2023 0.1761 9 6 1.2700 -2.4882 -0.2377 10 1 1.9551 -3.3251 -0.1016 11 6 0.7277 -2.5066 -1.6436 12 6 1.4508 -3.1096 -2.6556 13 6 0.9514 -3.1299 -3.9445 14 6 -0.2673 -2.5398 -4.2228 15 6 -0.9880 -1.9321 -3.2118 16 6 -0.4904 -1.9153 -1.9222 17 7 0.1597 -2.6040 0.7171 18 6 -0.7087 -3.7390 0.3791 19 6 -1.9290 -3.7419 1.3027 20 6 -1.4620 -3.8480 2.7571 21 6 -0.5209 -2.6811 3.0690 22 1 -1.0595 -1.7396 2.9617 23 7 -0.0227 -2.8072 4.4453 24 6 0.6586 -2.7089 2.0942 25 1 -0.4850 0.8401 -0.0004 26 1 2.4047 -3.5673 -2.4388 27 1 1.5147 -3.6044 -4.7344 28 1 -0.6562 -2.5534 -5.2303 29 1 -1.9399 -1.4708 -3.4294 30 1 -1.0536 -1.4409 -1.1322 31 1 -1.0371 -3.6492 -0.6564 32 1 -0.1556 -4.6697 0.5052 33 1 -2.5656 -4.5934 1.0619 34 1 -2.4903 -2.8174 1.1671 35 1 -0.9343 -4.7905 2.9025 36 1 -2.3256 -3.8068 3.4209 37 1 -0.7835 -2.7915 5.1080 38 1 0.5338 -3.6418 4.5534 39 1 1.2054 -3.6444 2.2123 40 1 1.3233 -1.8710 2.3045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226761376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:58 Heat of formation + Delta-G solvation = 37.024060 kcal Electronic energy + Delta-G solvation = -20584.427514 eV Core-core repulsion = 17784.815510 eV Total energy + Delta-G solvation = -2799.612004 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.93953 -37.57767 -34.60833 -32.65198 -31.21303 -30.03826 -29.73546 -27.29844 -26.65018 -23.69403 -21.92208 -21.64509 -21.21075 -19.73133 -19.04295 -16.41076 -15.80891 -15.41190 -15.08595 -14.63886 -14.06291 -13.89189 -13.65311 -13.35740 -13.00043 -12.89996 -12.49149 -12.36091 -11.98534 -11.88002 -11.59375 -11.36142 -10.88854 -10.71152 -10.52004 -10.46597 -10.29519 -10.12775 -10.04576 -9.66432 -9.45015 -9.17156 -8.43325 -8.22431 -7.84434 -7.40602 -6.78008 -5.86628 -4.05021 2.43704 2.53422 3.33965 3.40726 3.43702 4.45389 4.76117 4.95917 5.21621 5.36012 5.39981 5.53001 5.70888 5.78100 5.89665 5.93224 6.00190 6.09324 6.17769 6.32077 6.32784 6.39755 6.40600 6.60143 6.74108 6.75253 6.79785 6.89041 7.00983 7.04626 7.18560 7.25878 7.46315 7.60221 7.65496 7.80795 7.86756 7.95566 8.14352 8.24716 8.49656 8.68262 9.03623 9.60776 11.05839 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.010199 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.105213 B = 2744.641995 C = 3969.376935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.092 3.908 3 Si 0.878 3.122 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.250 3.750 10 H -0.005 1.005 11 C -0.032 4.032 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.075 4.075 17 N -0.482 5.482 18 C 0.044 3.956 19 C -0.107 4.107 20 C -0.148 4.148 21 C 0.094 3.906 22 H 0.090 0.910 23 N -0.844 5.844 24 C 0.089 3.911 25 H 0.255 0.745 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.166 0.834 31 H 0.074 0.926 32 H 0.003 0.997 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.333 0.667 38 H 0.331 0.669 39 H -0.002 1.002 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 -6.412 1.176 7.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.117 4.117 3 Si 0.706 3.294 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.144 3.856 10 H 0.013 0.987 11 C -0.033 4.033 12 C -0.156 4.156 13 C -0.160 4.160 14 C -0.170 4.170 15 C -0.167 4.167 16 C -0.093 4.093 17 N -0.207 5.207 18 C -0.084 4.084 19 C -0.146 4.146 20 C -0.188 4.188 21 C -0.017 4.017 22 H 0.108 0.892 23 N -0.371 5.371 24 C -0.040 4.040 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.183 0.817 31 H 0.093 0.907 32 H 0.021 0.979 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.016 0.984 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.721 -5.157 1.023 6.441 hybrid contribution 0.438 -0.662 -0.163 0.810 sum -3.283 -5.819 0.861 6.736 Atomic orbital electron populations 1.70025 1.05467 1.25244 1.44631 1.24840 0.94594 0.98298 0.93944 0.86836 0.80298 0.84263 0.78009 1.20815 1.21260 1.20039 1.20792 0.93787 0.90111 1.51918 0.92479 1.18219 0.86983 0.95210 0.85184 0.98685 1.20357 0.93009 0.93069 0.96856 1.20906 0.99591 1.01904 0.93180 1.20771 0.96679 1.02296 0.96209 1.20805 0.96248 1.01909 0.98070 1.21188 0.99703 1.01409 0.94365 1.21931 0.96201 0.94732 0.96474 1.61999 1.20683 1.37355 1.00617 1.22222 0.94496 0.92195 0.99488 1.21455 0.97899 1.01206 0.94021 1.22407 0.99340 0.99320 0.97722 1.21535 0.95391 0.97691 0.87083 0.89222 1.58872 1.27071 1.45812 1.05366 1.21631 0.94597 0.99243 0.88530 0.93507 0.87838 0.88047 0.88253 0.87985 0.81691 0.90741 0.97856 0.93313 0.91032 0.93396 0.93286 0.85561 0.85695 0.98377 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.09 9.10 55.43 0.50 -20.58 16 2 C 0.09 2.37 5.17 -17.82 -0.09 2.28 16 3 Si 0.88 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -13.76 7.49 -34.44 -0.26 -14.02 16 8 H 0.06 1.52 7.84 -52.48 -0.41 1.11 16 9 C 0.25 5.96 1.97 -70.02 -0.14 5.82 16 10 H 0.00 -0.11 8.04 -51.93 -0.42 -0.53 16 11 C -0.03 -0.73 3.74 -104.63 -0.39 -1.12 16 12 C -0.14 -2.89 9.68 -39.58 -0.38 -3.27 16 13 C -0.14 -2.69 10.05 -39.58 -0.40 -3.08 16 14 C -0.15 -2.85 10.05 -39.59 -0.40 -3.25 16 15 C -0.15 -2.99 10.05 -39.59 -0.40 -3.38 16 16 C -0.08 -1.69 6.24 -39.58 -0.25 -1.93 16 17 N -0.48 -10.53 2.55 -229.48 -0.59 -11.11 16 18 C 0.04 0.87 4.87 -3.83 -0.02 0.85 16 19 C -0.11 -1.79 6.09 -26.65 -0.16 -1.96 16 20 C -0.15 -2.29 5.57 -26.61 -0.15 -2.43 16 21 C 0.09 1.66 3.41 -67.62 -0.23 1.42 16 22 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 23 N -0.84 -12.65 9.26 -4.59 -0.04 -12.69 16 24 C 0.09 1.84 4.85 -3.83 -0.02 1.82 16 25 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 26 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 27 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.17 4.00 5.43 -52.49 -0.28 3.71 16 31 H 0.07 1.52 5.27 -51.93 -0.27 1.25 16 32 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.33 4.21 9.04 -39.29 -0.36 3.85 16 38 H 0.33 4.53 8.98 -39.29 -0.35 4.18 16 39 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 40 H 0.09 2.15 7.07 -51.93 -0.37 1.78 16 LS Contribution 310.23 15.07 4.68 4.68 Total: -1.00 -26.05 310.23 -10.00 -36.05 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.25 Total: 10.25 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -3.28 Total: -22.27 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.12 Total: -44.39 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.05 -10.00 -36.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226761376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.078 kcal (2) G-P(sol) polarization free energy of solvation -26.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds