Wall clock time and date at job start Mon Mar 30 2020 06:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48501 * 109.47089 * 269.99693 * 3 2 1 5 5 H 1.48498 * 109.47081 * 29.99860 * 3 2 1 6 6 H 1.48503 * 109.47046 * 149.99366 * 3 2 1 7 7 C 1.37880 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99637 * 190.81851 * 7 2 1 9 9 C 1.50697 * 120.00021 * 10.54407 * 7 2 1 10 10 H 1.09000 * 109.46810 * 185.66404 * 9 7 2 11 11 C 1.50700 * 109.47157 * 65.66689 * 9 7 2 12 12 C 1.38228 * 120.00129 * 94.83142 * 11 9 7 13 13 C 1.38246 * 119.99823 * 179.80847 * 12 11 9 14 14 C 1.38233 * 119.99553 * 0.40067 * 13 12 11 15 15 C 1.38228 * 120.00403 * 359.85465 * 14 13 12 16 16 C 1.38237 * 120.00230 * 359.95681 * 15 14 13 17 17 N 1.46898 * 109.46894 * 305.66363 * 9 7 2 18 18 C 1.46852 * 110.99567 * 170.79209 * 17 9 7 19 19 C 1.53040 * 109.51977 * 185.83834 * 18 17 9 20 20 C 1.53118 * 109.27990 * 300.81871 * 19 18 17 21 21 C 1.53118 * 109.15829 * 57.65864 * 20 19 18 22 22 H 1.08998 * 109.54085 * 62.30490 * 21 20 19 23 23 N 1.46907 * 109.50168 * 182.40692 * 21 20 19 24 24 C 1.46843 * 110.99981 * 294.99715 * 17 9 7 25 25 H 0.97007 * 120.00035 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00106 * 359.97438 * 12 11 9 27 27 H 1.08002 * 119.99462 * 180.23195 * 13 12 11 28 28 H 1.08002 * 119.99389 * 179.83711 * 14 13 12 29 29 H 1.08000 * 119.99858 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.00312 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.46286 * 305.85553 * 18 17 9 32 32 H 1.08996 * 109.46332 * 65.82625 * 18 17 9 33 33 H 1.09004 * 109.49996 * 180.87533 * 19 18 17 34 34 H 1.09002 * 109.50262 * 60.76267 * 19 18 17 35 35 H 1.08993 * 109.52438 * 297.75041 * 20 19 18 36 36 H 1.09001 * 109.52450 * 177.55927 * 20 19 18 37 37 H 1.00900 * 110.99744 * 299.79923 * 23 21 20 38 38 H 1.00898 * 111.00313 * 63.75389 * 23 21 20 39 39 H 1.08996 * 109.46945 * 294.17944 * 24 17 9 40 40 H 1.08996 * 109.46435 * 54.15290 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0701 -1.2023 0.1761 9 6 1.2700 -2.4882 -0.2377 10 1 1.9551 -3.3251 -0.1016 11 6 0.7277 -2.5066 -1.6436 12 6 1.4508 -3.1096 -2.6556 13 6 0.9514 -3.1299 -3.9445 14 6 -0.2673 -2.5398 -4.2228 15 6 -0.9880 -1.9321 -3.2118 16 6 -0.4904 -1.9153 -1.9222 17 7 0.1597 -2.6040 0.7171 18 6 -0.7087 -3.7390 0.3791 19 6 -1.9290 -3.7419 1.3027 20 6 -1.4620 -3.8480 2.7571 21 6 -0.5209 -2.6811 3.0690 22 1 -1.0595 -1.7396 2.9617 23 7 -0.0227 -2.8072 4.4453 24 6 0.6586 -2.7089 2.0942 25 1 -0.4850 0.8401 -0.0004 26 1 2.4047 -3.5673 -2.4388 27 1 1.5147 -3.6044 -4.7344 28 1 -0.6562 -2.5534 -5.2303 29 1 -1.9399 -1.4708 -3.4294 30 1 -1.0536 -1.4409 -1.1322 31 1 -1.0371 -3.6492 -0.6564 32 1 -0.1556 -4.6697 0.5052 33 1 -2.5656 -4.5934 1.0619 34 1 -2.4903 -2.8174 1.1671 35 1 -0.9343 -4.7905 2.9025 36 1 -2.3256 -3.8068 3.4209 37 1 -0.7835 -2.7915 5.1080 38 1 0.5338 -3.6418 4.5534 39 1 1.2054 -3.6444 2.2123 40 1 1.3233 -1.8710 2.3045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226761376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:58 Heat of formation + Delta-G solvation = 22.376910 kcal Electronic energy + Delta-G solvation = -20585.062662 eV Core-core repulsion = 17784.815510 eV Total energy + Delta-G solvation = -2800.247152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56057 -39.10054 -36.21325 -34.31959 -32.87472 -31.62285 -31.33182 -28.77515 -28.44253 -25.41514 -23.55200 -23.16986 -22.77761 -21.38147 -20.55414 -18.29037 -17.37472 -16.84071 -16.78200 -16.40877 -15.64555 -15.36466 -15.27059 -14.93107 -14.55862 -14.39961 -14.05892 -13.94586 -13.65010 -13.47947 -13.26516 -12.88716 -12.77079 -12.55950 -12.20262 -12.01299 -11.84948 -11.72859 -11.64618 -11.38820 -11.01837 -10.96004 -10.41042 -9.47928 -9.44860 -9.06823 -8.51347 -7.82035 -6.06833 0.82314 0.94627 1.42122 1.45866 1.51206 2.49319 3.14989 3.35284 3.46514 3.89726 4.02615 4.11533 4.27386 4.34288 4.36927 4.44013 4.50006 4.59015 4.68284 4.78190 4.80572 4.92697 4.98265 5.05283 5.12343 5.21933 5.24983 5.30341 5.40924 5.48095 5.57999 5.64851 5.78347 5.87518 6.04321 6.22023 6.31920 6.36560 6.55622 6.61867 6.73127 6.96409 7.15338 7.59451 9.06090 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.010199 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.105213 B = 2744.641995 C = 3969.376935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.063 3.937 3 Si 0.923 3.077 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.549 4.549 8 H 0.037 0.963 9 C 0.251 3.749 10 H -0.025 1.025 11 C -0.053 4.053 12 C -0.154 4.154 13 C -0.136 4.136 14 C -0.145 4.145 15 C -0.154 4.154 16 C -0.090 4.090 17 N -0.489 5.489 18 C 0.047 3.953 19 C -0.102 4.102 20 C -0.138 4.138 21 C 0.106 3.894 22 H 0.063 0.937 23 N -0.847 5.847 24 C 0.093 3.907 25 H 0.253 0.747 26 H 0.106 0.894 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.064 0.936 32 H 0.001 0.999 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.350 0.650 38 H 0.342 0.658 39 H -0.003 1.003 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.929 -7.266 0.383 8.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.145 4.145 3 Si 0.751 3.249 4 H -0.211 1.211 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.587 4.587 8 H 0.056 0.944 9 C 0.144 3.856 10 H -0.007 1.007 11 C -0.054 4.054 12 C -0.173 4.173 13 C -0.154 4.154 14 C -0.163 4.163 15 C -0.172 4.172 16 C -0.108 4.108 17 N -0.214 5.214 18 C -0.081 4.081 19 C -0.141 4.141 20 C -0.177 4.177 21 C -0.006 4.006 22 H 0.081 0.919 23 N -0.377 5.377 24 C -0.036 4.036 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.141 0.859 30 H 0.161 0.839 31 H 0.082 0.918 32 H 0.019 0.981 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.015 0.985 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.998 -6.019 0.247 7.828 hybrid contribution 0.857 -0.445 0.041 0.966 sum -4.141 -6.464 0.288 7.682 Atomic orbital electron populations 1.70136 1.05745 1.25297 1.44684 1.25230 0.95290 0.99944 0.93992 0.86134 0.79269 0.81940 0.77565 1.21061 1.20825 1.20478 1.20876 0.93125 0.91768 1.52953 0.94428 1.18115 0.87331 0.93357 0.86788 1.00734 1.20304 0.93906 0.94721 0.96469 1.21112 0.99846 1.02261 0.94057 1.21152 0.96930 1.01418 0.95941 1.21219 0.95627 1.00076 0.99375 1.21447 1.00684 1.01340 0.93688 1.21722 0.96179 0.95660 0.97239 1.61877 1.20115 1.38773 1.00590 1.22222 0.95063 0.91011 0.99804 1.21422 0.96643 1.01744 0.94250 1.22308 0.99725 0.98437 0.97244 1.21221 0.94076 0.97634 0.87630 0.91876 1.58728 1.27991 1.46687 1.04332 1.21540 0.95505 0.97394 0.89124 0.93739 0.87544 0.84648 0.84499 0.85942 0.83883 0.91790 0.98065 0.90551 0.92323 0.92362 0.90553 0.83618 0.84549 0.98479 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.53 9.10 21.45 0.20 -43.33 16 2 C 0.06 3.34 5.17 84.66 0.44 3.78 16 3 Si 0.92 43.43 29.55 68.60 2.03 45.46 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.55 -29.95 7.49 25.60 0.19 -29.76 16 8 H 0.04 2.12 7.84 -2.91 -0.02 2.09 16 9 C 0.25 12.48 1.97 43.42 0.09 12.57 16 10 H -0.02 -1.28 8.04 -2.39 -0.02 -1.30 16 11 C -0.05 -2.47 3.74 -19.87 -0.07 -2.54 16 12 C -0.15 -6.45 9.68 22.27 0.22 -6.24 16 13 C -0.14 -4.83 10.05 22.27 0.22 -4.61 16 14 C -0.15 -4.96 10.05 22.27 0.22 -4.74 16 15 C -0.15 -5.91 10.05 22.27 0.22 -5.68 16 16 C -0.09 -4.04 6.24 22.27 0.14 -3.90 16 17 N -0.49 -22.10 2.55 -879.93 -2.24 -24.34 16 18 C 0.05 1.85 4.87 86.33 0.42 2.27 16 19 C -0.10 -3.27 6.09 30.65 0.19 -3.09 16 20 C -0.14 -3.96 5.57 30.67 0.17 -3.79 16 21 C 0.11 3.70 3.41 44.97 0.15 3.85 16 22 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 23 N -0.85 -24.51 9.26 -168.44 -1.56 -26.06 16 24 C 0.09 4.00 4.85 86.33 0.42 4.42 16 25 H 0.25 12.98 8.31 -92.70 -0.77 12.21 16 26 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 27 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 28 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.14 7.09 5.43 -2.91 -0.02 7.07 16 31 H 0.06 2.64 5.27 -2.39 -0.01 2.63 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.08 2.04 8.14 -2.38 -0.02 2.03 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.35 8.15 9.04 -89.69 -0.81 7.34 16 38 H 0.34 8.87 8.98 -89.70 -0.81 8.06 16 39 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.05 2.58 7.07 -2.39 -0.02 2.56 16 Total: -1.00 -57.77 310.23 0.85 -56.92 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.58 Total: 28.81 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 3.02 Total: -37.45 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.61 Total: -93.74 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -57.77 0.85 -56.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226761376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.295 kcal (2) G-P(sol) polarization free energy of solvation -57.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds