Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00275 * 2 1 4 4 H 1.48495 * 109.47282 * 270.00327 * 3 2 1 5 5 H 1.48509 * 109.46725 * 30.00050 * 3 2 1 6 6 H 1.48501 * 109.47195 * 149.99340 * 3 2 1 7 7 C 1.37882 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00190 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47121 * 180.02562 * 9 7 2 11 11 C 1.39674 * 119.99882 * 263.57258 * 10 9 7 12 12 C 1.38907 * 120.07401 * 182.29339 * 11 10 9 13 13 C 1.38113 * 119.92422 * 179.76990 * 12 11 10 14 14 C 1.38280 * 120.07094 * 0.50638 * 13 12 11 15 15 C 1.38282 * 120.15208 * 359.74943 * 14 13 12 16 16 C 1.38098 * 120.07670 * 359.97438 * 15 14 13 17 17 C 1.46502 * 120.00061 * 83.57622 * 10 9 7 18 18 H 1.09001 * 110.04874 * 232.48945 * 17 10 9 19 19 C 1.54265 * 110.03401 * 353.90283 * 17 10 9 20 20 C 1.54886 * 104.19739 * 142.89665 * 19 17 10 21 21 C 1.54899 * 102.74770 * 322.06153 * 20 19 17 22 22 C 1.53871 * 110.03239 * 111.07343 * 17 10 9 23 23 H 1.08998 * 110.03167 * 121.38203 * 22 17 10 24 24 N 1.46894 * 110.03282 * 359.97438 * 22 17 10 25 25 H 0.96999 * 120.00094 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47138 * 60.00056 * 9 7 2 27 27 H 1.09003 * 109.46827 * 300.00363 * 9 7 2 28 28 H 1.07998 * 120.04222 * 0.02562 * 12 11 10 29 29 H 1.07996 * 119.96075 * 180.25649 * 13 12 11 30 30 H 1.08001 * 119.92400 * 179.72093 * 14 13 12 31 31 H 1.08006 * 119.96500 * 179.97438 * 15 14 13 32 32 H 1.08004 * 120.03949 * 180.02562 * 16 15 14 33 33 H 1.09000 * 110.48665 * 261.58045 * 19 17 10 34 34 H 1.09006 * 110.48463 * 24.08298 * 19 17 10 35 35 H 1.08997 * 110.75404 * 80.37268 * 20 19 17 36 36 H 1.08999 * 110.76085 * 203.56483 * 20 19 17 37 37 H 1.08998 * 110.48504 * 279.26427 * 21 20 19 38 38 H 1.08999 * 110.48568 * 156.62025 * 21 20 19 39 39 H 1.00902 * 110.99955 * 174.84061 * 24 22 17 40 40 H 1.00897 * 111.00198 * 298.78813 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 2.5549 -4.2309 -1.2035 12 6 3.4205 -5.3173 -1.2002 13 6 3.7626 -5.9293 -2.3902 14 6 3.2526 -5.4551 -3.5848 15 6 2.3949 -4.3705 -3.5921 16 6 2.0442 -3.7574 -2.4054 17 6 2.7860 -4.0778 1.2596 18 1 3.8729 -4.1048 1.1813 19 6 2.3623 -3.1455 2.4133 20 6 2.1546 -4.0994 3.6157 21 6 1.5152 -5.3465 2.9562 22 6 2.2474 -5.4772 1.6048 23 1 3.0728 -6.1836 1.6933 24 7 1.3102 -5.9259 0.5665 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5564 -0.8919 27 1 0.6240 -2.5575 0.8880 28 1 3.8224 -5.6857 -0.2679 29 1 4.4323 -6.7766 -2.3879 30 1 3.5253 -5.9327 -4.5144 31 1 1.9987 -4.0024 -4.5270 32 1 1.3739 -2.9106 -2.4118 33 1 3.1503 -2.4243 2.6300 34 1 1.4333 -2.6313 2.1666 35 1 3.1091 -4.3529 4.0769 36 1 1.4790 -3.6568 4.3478 37 1 0.4481 -5.1897 2.7983 38 1 1.6850 -6.2316 3.5693 39 1 1.0123 -6.8753 0.7340 40 1 0.5179 -5.3046 0.5016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226925557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = 41.813355 kcal Electronic energy + Delta-G solvation = -20378.222963 eV Core-core repulsion = 17578.818639 eV Total energy + Delta-G solvation = -2799.404324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45255 -37.57911 -34.54858 -32.64111 -32.13164 -30.09798 -29.06157 -27.76653 -26.30040 -25.27911 -22.92733 -21.38619 -20.47974 -20.32594 -18.43666 -16.95846 -16.43506 -16.04538 -15.52742 -14.82238 -14.20618 -14.08528 -13.95252 -13.47364 -13.28477 -12.82186 -12.60649 -12.45732 -12.18353 -11.95620 -11.27733 -11.17907 -11.05203 -10.93060 -10.80768 -10.63580 -10.59604 -10.37746 -10.19932 -9.86773 -9.70895 -9.60618 -8.68130 -8.45676 -8.25983 -7.95837 -6.32314 -5.92188 -4.13566 2.36202 2.58392 3.27418 3.34319 3.37606 4.16600 4.42305 4.79699 4.86125 5.01759 5.04346 5.24349 5.33684 5.65341 5.71280 5.77102 5.81673 5.84695 5.93398 5.97325 6.00908 6.09185 6.23837 6.35322 6.39881 6.51859 6.65969 6.68936 6.82171 6.88442 7.12137 7.30446 7.38202 7.43653 7.52787 7.54856 7.82015 7.84364 7.86728 8.21589 8.45330 8.71336 8.97625 9.53227 10.97749 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.009191 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.601870 B = 3045.600207 C = 4449.559762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.247 3.753 10 N -0.597 5.597 11 C 0.266 3.734 12 C -0.177 4.177 13 C -0.089 4.089 14 C -0.208 4.208 15 C -0.083 4.083 16 C -0.197 4.197 17 C 0.165 3.835 18 H 0.059 0.941 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.156 4.156 22 C 0.073 3.927 23 H 0.075 0.925 24 N -0.823 5.823 25 H 0.262 0.738 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.328 0.672 40 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 -10.575 2.980 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.303 5.303 11 C 0.160 3.840 12 C -0.199 4.199 13 C -0.108 4.108 14 C -0.229 4.229 15 C -0.102 4.102 16 C -0.219 4.219 17 C 0.059 3.941 18 H 0.077 0.923 19 C -0.171 4.171 20 C -0.161 4.161 21 C -0.196 4.196 22 C -0.041 4.041 23 H 0.093 0.907 24 N -0.351 5.351 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.625 -10.213 2.657 11.158 hybrid contribution -0.209 0.880 0.838 1.232 sum 3.416 -9.334 3.494 10.535 Atomic orbital electron populations 1.69921 1.05904 1.26948 1.50718 1.24933 0.94795 0.99062 0.95234 0.86592 0.79813 0.83393 0.78217 1.20627 1.21298 1.19969 1.21578 0.93532 0.90676 1.50479 0.92421 1.19265 0.87725 0.82632 0.97603 1.46848 1.47073 1.34700 1.01658 1.17608 0.90711 0.89741 0.85954 1.20368 1.03553 0.98832 0.97197 1.20614 0.98970 0.98561 0.92605 1.20543 1.04457 1.00917 0.96953 1.20702 0.97141 0.95473 0.96879 1.20835 1.06282 1.03621 0.91198 1.21343 0.96287 0.91392 0.85115 0.92310 1.22842 1.04782 0.97075 0.92431 1.22416 1.00039 0.95857 0.97788 1.23218 1.00065 0.98099 0.98178 1.22550 0.95513 0.97592 0.88402 0.90692 1.58803 1.21499 1.05941 1.48857 0.92792 0.94616 0.95144 0.87629 0.88127 0.88281 0.87736 0.85735 0.91345 0.87770 0.92079 0.91855 0.91839 0.92452 0.86075 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.03 13.29 55.43 0.74 -24.30 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.73 8.61 -34.44 -0.30 -14.03 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.25 5.85 4.37 -5.19 -0.02 5.83 16 10 N -0.60 -12.03 1.79 -164.28 -0.29 -12.32 16 11 C 0.27 5.35 5.45 -83.79 -0.46 4.89 16 12 C -0.18 -3.20 7.94 -39.38 -0.31 -3.52 16 13 C -0.09 -1.50 10.04 -39.61 -0.40 -1.90 16 14 C -0.21 -3.56 10.04 -39.55 -0.40 -3.95 16 15 C -0.08 -1.53 10.04 -39.62 -0.40 -1.92 16 16 C -0.20 -4.09 9.20 -39.38 -0.36 -4.45 16 17 C 0.16 2.85 2.89 -66.81 -0.19 2.66 16 18 H 0.06 1.04 7.67 -51.93 -0.40 0.64 16 19 C -0.13 -2.32 5.55 -25.07 -0.14 -2.45 16 20 C -0.12 -1.67 6.91 -24.74 -0.17 -1.84 16 21 C -0.16 -2.01 6.51 -25.07 -0.16 -2.17 16 22 C 0.07 1.04 2.90 -66.60 -0.19 0.85 16 23 H 0.07 1.01 7.77 -51.93 -0.40 0.61 16 24 N -0.82 -12.00 6.36 -3.72 -0.02 -12.02 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 26 H 0.04 0.92 5.96 -51.93 -0.31 0.61 16 27 H 0.03 0.76 5.84 -51.93 -0.30 0.45 16 28 H 0.11 1.81 5.63 -52.49 -0.30 1.51 16 29 H 0.10 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.12 2.83 6.07 -52.48 -0.32 2.51 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.10 2.13 4.82 -51.93 -0.25 1.88 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.86 7.92 -51.93 -0.41 0.45 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.33 4.05 9.08 -39.29 -0.36 3.69 16 40 H 0.34 5.57 8.33 -39.29 -0.33 5.24 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -27.04 310.14 -9.41 -36.44 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.88 Total: 11.89 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -3.60 Total: -20.45 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.42 Total: -48.65 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.04 -9.41 -36.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226925557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.258 kcal (2) G-P(sol) polarization free energy of solvation -27.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds