Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00275 * 2 1 4 4 H 1.48495 * 109.47282 * 270.00327 * 3 2 1 5 5 H 1.48509 * 109.46725 * 30.00050 * 3 2 1 6 6 H 1.48501 * 109.47195 * 149.99340 * 3 2 1 7 7 C 1.37882 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00190 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47121 * 180.02562 * 9 7 2 11 11 C 1.39674 * 119.99882 * 263.57258 * 10 9 7 12 12 C 1.38907 * 120.07401 * 182.29339 * 11 10 9 13 13 C 1.38113 * 119.92422 * 179.76990 * 12 11 10 14 14 C 1.38280 * 120.07094 * 0.50638 * 13 12 11 15 15 C 1.38282 * 120.15208 * 359.74943 * 14 13 12 16 16 C 1.38098 * 120.07670 * 359.97438 * 15 14 13 17 17 C 1.46502 * 120.00061 * 83.57622 * 10 9 7 18 18 H 1.09001 * 110.04874 * 232.48945 * 17 10 9 19 19 C 1.54265 * 110.03401 * 353.90283 * 17 10 9 20 20 C 1.54886 * 104.19739 * 142.89665 * 19 17 10 21 21 C 1.54899 * 102.74770 * 322.06153 * 20 19 17 22 22 C 1.53871 * 110.03239 * 111.07343 * 17 10 9 23 23 H 1.08998 * 110.03167 * 121.38203 * 22 17 10 24 24 N 1.46894 * 110.03282 * 359.97438 * 22 17 10 25 25 H 0.96999 * 120.00094 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47138 * 60.00056 * 9 7 2 27 27 H 1.09003 * 109.46827 * 300.00363 * 9 7 2 28 28 H 1.07998 * 120.04222 * 0.02562 * 12 11 10 29 29 H 1.07996 * 119.96075 * 180.25649 * 13 12 11 30 30 H 1.08001 * 119.92400 * 179.72093 * 14 13 12 31 31 H 1.08006 * 119.96500 * 179.97438 * 15 14 13 32 32 H 1.08004 * 120.03949 * 180.02562 * 16 15 14 33 33 H 1.09000 * 110.48665 * 261.58045 * 19 17 10 34 34 H 1.09006 * 110.48463 * 24.08298 * 19 17 10 35 35 H 1.08997 * 110.75404 * 80.37268 * 20 19 17 36 36 H 1.08999 * 110.76085 * 203.56483 * 20 19 17 37 37 H 1.08998 * 110.48504 * 279.26427 * 21 20 19 38 38 H 1.08999 * 110.48568 * 156.62025 * 21 20 19 39 39 H 1.00902 * 110.99955 * 174.84061 * 24 22 17 40 40 H 1.00897 * 111.00198 * 298.78813 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 2.5549 -4.2309 -1.2035 12 6 3.4205 -5.3173 -1.2002 13 6 3.7626 -5.9293 -2.3902 14 6 3.2526 -5.4551 -3.5848 15 6 2.3949 -4.3705 -3.5921 16 6 2.0442 -3.7574 -2.4054 17 6 2.7860 -4.0778 1.2596 18 1 3.8729 -4.1048 1.1813 19 6 2.3623 -3.1455 2.4133 20 6 2.1546 -4.0994 3.6157 21 6 1.5152 -5.3465 2.9562 22 6 2.2474 -5.4772 1.6048 23 1 3.0728 -6.1836 1.6933 24 7 1.3102 -5.9259 0.5665 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5564 -0.8919 27 1 0.6240 -2.5575 0.8880 28 1 3.8224 -5.6857 -0.2679 29 1 4.4323 -6.7766 -2.3879 30 1 3.5253 -5.9327 -4.5144 31 1 1.9987 -4.0024 -4.5270 32 1 1.3739 -2.9106 -2.4118 33 1 3.1503 -2.4243 2.6300 34 1 1.4333 -2.6313 2.1666 35 1 3.1091 -4.3529 4.0769 36 1 1.4790 -3.6568 4.3478 37 1 0.4481 -5.1897 2.7983 38 1 1.6850 -6.2316 3.5693 39 1 1.0123 -6.8753 0.7340 40 1 0.5179 -5.3046 0.5016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226925557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = 27.402451 kcal Electronic energy + Delta-G solvation = -20378.847867 eV Core-core repulsion = 17578.818639 eV Total energy + Delta-G solvation = -2800.029228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85811 -38.92844 -36.15024 -34.47941 -33.44302 -31.56049 -30.57568 -29.38392 -27.62884 -26.81996 -24.69809 -22.84715 -21.93686 -21.51943 -19.85946 -18.67461 -18.07366 -17.48004 -16.98239 -16.57053 -15.81720 -15.36564 -15.21806 -14.88874 -14.75536 -14.35428 -14.23963 -13.82480 -13.69116 -13.33782 -13.05768 -12.87283 -12.54288 -12.39304 -12.34195 -12.20263 -11.91725 -11.86779 -11.64397 -11.51626 -11.36736 -11.19306 -10.55003 -10.25289 -9.54442 -9.28056 -8.28459 -7.59598 -6.28882 0.90074 1.14589 1.36000 1.38024 1.47102 2.36778 2.69336 3.12055 3.38683 3.63589 3.80010 3.87183 4.19671 4.32719 4.41478 4.49809 4.54364 4.56498 4.63601 4.69579 4.76139 4.92663 4.98391 5.01804 5.06521 5.17654 5.21828 5.29384 5.29651 5.39273 5.49719 5.58988 5.72164 5.86767 5.93378 6.04603 6.17170 6.34696 6.40878 6.66154 6.75760 6.99865 7.17744 7.43120 8.88125 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.009191 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.601870 B = 3045.600207 C = 4449.559762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.015 3.985 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.043 0.957 9 C 0.271 3.729 10 N -0.601 5.601 11 C 0.248 3.752 12 C -0.175 4.175 13 C -0.084 4.084 14 C -0.203 4.203 15 C -0.089 4.089 16 C -0.230 4.230 17 C 0.158 3.842 18 H 0.057 0.943 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.147 4.147 22 C 0.083 3.917 23 H 0.095 0.905 24 N -0.829 5.829 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.017 0.983 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.342 0.658 40 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -12.645 3.328 14.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.565 4.565 8 H 0.062 0.938 9 C 0.150 3.850 10 N -0.307 5.307 11 C 0.143 3.857 12 C -0.197 4.197 13 C -0.103 4.103 14 C -0.224 4.224 15 C -0.107 4.107 16 C -0.253 4.253 17 C 0.053 3.947 18 H 0.075 0.925 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.186 4.186 22 C -0.031 4.031 23 H 0.113 0.887 24 N -0.357 5.357 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.035 0.965 28 H 0.137 0.863 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.156 0.844 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.431 -12.319 3.008 13.795 hybrid contribution -0.731 1.475 0.659 1.773 sum 4.700 -10.844 3.666 12.374 Atomic orbital electron populations 1.70023 1.07123 1.27675 1.51706 1.25646 0.95550 1.02133 0.95068 0.85671 0.78781 0.79798 0.78115 1.20548 1.20537 1.19512 1.21741 0.92844 0.92115 1.49850 0.93822 1.18708 0.87761 0.83226 0.95338 1.46664 1.46918 1.34144 1.03012 1.17819 0.91689 0.90744 0.85442 1.20522 1.02745 0.97919 0.98521 1.21042 0.98528 0.98922 0.91798 1.20915 1.03048 0.99869 0.98537 1.20927 0.97382 0.95899 0.96515 1.20763 1.07532 1.03938 0.93041 1.21573 0.96131 0.93322 0.83681 0.92465 1.22729 1.02211 0.97630 0.94640 1.22382 1.01433 0.95059 0.96220 1.23147 0.99111 0.98769 0.97589 1.22460 0.96053 0.95706 0.88864 0.88665 1.58753 1.21105 1.06574 1.49287 0.92711 0.97636 0.96526 0.86327 0.84589 0.85163 0.86293 0.89265 0.92732 0.91532 0.89795 0.91462 0.92909 0.89511 0.84416 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 13.29 21.45 0.28 -53.47 16 2 C 0.01 0.83 5.46 84.66 0.46 1.29 16 3 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -28.96 8.61 25.60 0.22 -28.74 16 8 H 0.04 2.47 7.81 -2.91 -0.02 2.45 16 9 C 0.27 13.67 4.37 85.63 0.37 14.04 16 10 N -0.60 -25.06 1.79 -673.66 -1.20 -26.27 16 11 C 0.25 10.11 5.45 38.21 0.21 10.32 16 12 C -0.17 -5.99 7.94 22.40 0.18 -5.82 16 13 C -0.08 -2.56 10.04 22.25 0.22 -2.34 16 14 C -0.20 -6.36 10.04 22.29 0.22 -6.14 16 15 C -0.09 -3.21 10.04 22.25 0.22 -2.99 16 16 C -0.23 -9.92 9.20 22.40 0.21 -9.72 16 17 C 0.16 5.45 2.89 45.71 0.13 5.58 16 18 H 0.06 1.98 7.67 -2.39 -0.02 1.96 16 19 C -0.13 -4.74 5.55 31.67 0.18 -4.57 16 20 C -0.11 -2.89 6.91 31.89 0.22 -2.67 16 21 C -0.15 -3.45 6.51 31.67 0.21 -3.24 16 22 C 0.08 2.19 2.90 45.64 0.13 2.33 16 23 H 0.10 2.20 7.77 -2.39 -0.02 2.18 16 24 N -0.83 -23.26 6.36 -165.69 -1.05 -24.31 16 25 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.01 0.32 5.96 -2.39 -0.01 0.31 16 27 H 0.02 0.90 5.84 -2.39 -0.01 0.89 16 28 H 0.12 3.72 5.63 -2.91 -0.02 3.71 16 29 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.09 4.41 6.07 -2.91 -0.02 4.39 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 2.88 4.82 -2.38 -0.01 2.87 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.37 7.92 -2.39 -0.02 1.35 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.34 7.76 9.08 -89.69 -0.81 6.94 16 40 H 0.33 10.92 8.33 -89.70 -0.75 10.17 16 Total: -1.00 -60.61 310.14 2.73 -57.89 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.51 Total: 32.47 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 3.19 Total: -32.65 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -1.97 Total: -104.05 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -60.61 2.73 -57.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226925557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.288 kcal (2) G-P(sol) polarization free energy of solvation -60.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds