Wall clock time and date at job start Mon Mar 30 2020 06:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99580 * 2 1 4 4 H 1.48502 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47411 * 300.00396 * 3 2 1 6 6 H 1.48503 * 109.46845 * 60.00734 * 3 2 1 7 7 C 1.37872 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99691 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46947 * 179.97438 * 9 7 2 11 11 C 1.39673 * 120.00491 * 270.00408 * 10 9 7 12 12 C 1.38907 * 120.07603 * 185.43643 * 11 10 9 13 13 C 1.38102 * 119.92206 * 179.76479 * 12 11 10 14 14 C 1.38291 * 120.07626 * 0.51182 * 13 12 11 15 15 C 1.38278 * 120.14742 * 359.74327 * 14 13 12 16 16 C 1.38110 * 120.07709 * 359.97438 * 15 14 13 17 17 C 1.46505 * 119.99407 * 90.00195 * 10 9 7 18 18 H 1.09002 * 110.01200 * 176.52227 * 17 10 9 19 19 C 1.53875 * 110.03345 * 55.13006 * 17 10 9 20 20 C 1.54260 * 106.59799 * 240.66278 * 19 17 10 21 21 C 1.54892 * 104.19768 * 336.39061 * 20 19 17 22 22 C 1.54466 * 110.16451 * 297.77464 * 17 10 9 23 23 H 1.08999 * 110.39970 * 24.17386 * 22 17 10 24 24 N 1.46900 * 110.66351 * 261.46218 * 22 17 10 25 25 H 0.96997 * 120.00238 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47025 * 60.00525 * 9 7 2 27 27 H 1.08997 * 109.47595 * 300.00413 * 9 7 2 28 28 H 1.07998 * 120.03896 * 0.02562 * 12 11 10 29 29 H 1.08002 * 119.96024 * 180.25000 * 13 12 11 30 30 H 1.08000 * 119.92262 * 179.76300 * 14 13 12 31 31 H 1.07998 * 119.96396 * 179.97438 * 15 14 13 32 32 H 1.08002 * 120.03741 * 179.97438 * 16 15 14 33 33 H 1.08998 * 110.03124 * 121.37732 * 19 17 10 34 34 H 1.09001 * 110.06998 * 359.97438 * 19 17 10 35 35 H 1.09001 * 110.48596 * 217.71262 * 20 19 17 36 36 H 1.08998 * 110.48646 * 95.06787 * 20 19 17 37 37 H 1.09000 * 110.75678 * 156.25266 * 21 20 19 38 38 H 1.09004 * 110.75578 * 279.44372 * 21 20 19 39 39 H 1.00896 * 110.99615 * 183.78254 * 24 22 17 40 40 H 1.00896 * 110.99922 * 307.73976 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 2.6563 -4.1429 -1.2119 12 6 3.4694 -5.2691 -1.2175 13 6 3.9115 -5.7936 -2.4161 14 6 3.5544 -5.1927 -3.6093 15 6 2.7494 -4.0684 -3.6070 16 6 2.2989 -3.5420 -2.4123 17 6 2.6801 -4.1698 1.2665 18 1 3.3294 -5.0248 1.0776 19 6 1.4854 -4.5973 2.1369 20 6 1.5645 -3.7650 3.4333 21 6 3.0579 -3.3676 3.5390 22 6 3.4485 -3.0940 2.0653 23 1 3.1281 -2.0965 1.7647 24 7 4.8977 -3.2476 1.8806 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 3.7520 -5.7364 -0.2858 29 1 4.5405 -6.6716 -2.4213 30 1 3.9047 -5.6027 -4.5450 31 1 2.4726 -3.6013 -4.5406 32 1 1.6706 -2.6636 -2.4112 33 1 1.5548 -5.6597 2.3704 34 1 0.5503 -4.3900 1.6165 35 1 1.2684 -4.3674 4.2920 36 1 0.9380 -2.8765 3.3550 37 1 3.1764 -2.4683 4.1433 38 1 3.6477 -4.1874 3.9491 39 1 5.4066 -2.5867 2.4483 40 1 5.1891 -4.1933 2.0775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226925567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:14 Heat of formation + Delta-G solvation = 27.534852 kcal Electronic energy + Delta-G solvation = -20249.664251 eV Core-core repulsion = 17449.640765 eV Total energy + Delta-G solvation = -2800.023487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.31036 -37.72507 -34.59072 -32.62540 -32.18075 -30.28937 -29.05697 -27.95995 -26.21717 -25.25138 -22.90604 -21.59526 -20.51382 -20.24107 -18.76993 -17.20152 -16.44343 -15.82093 -15.15841 -14.83603 -14.54141 -14.19175 -13.88353 -13.57534 -13.10616 -12.80314 -12.73374 -12.37404 -12.06343 -11.90890 -11.65814 -11.25049 -11.17208 -10.88221 -10.79053 -10.69587 -10.58198 -10.38174 -10.26242 -10.13257 -9.82161 -9.35569 -8.82120 -8.48185 -8.18841 -8.17610 -6.40409 -5.97426 -4.12585 2.19666 2.41519 3.25999 3.35074 3.41084 4.11822 4.42512 4.66494 4.78614 5.03406 5.22779 5.23946 5.39619 5.53266 5.61488 5.73354 5.82771 5.88536 5.94808 5.97333 6.02426 6.17121 6.19606 6.28621 6.41013 6.45590 6.52279 6.66559 6.73990 6.93052 7.10641 7.18900 7.26742 7.34334 7.42742 7.59383 7.71293 7.84472 7.86294 8.21607 8.37208 8.60220 8.98769 9.53194 10.97893 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013280 B = 0.009635 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.880778 B = 2905.478814 C = 4153.144933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.248 3.752 10 N -0.600 5.600 11 C 0.244 3.756 12 C -0.215 4.215 13 C -0.080 4.080 14 C -0.206 4.206 15 C -0.079 4.079 16 C -0.187 4.187 17 C 0.159 3.841 18 H 0.080 0.920 19 C -0.136 4.136 20 C -0.117 4.117 21 C -0.159 4.159 22 C 0.062 3.938 23 H 0.131 0.869 24 N -0.834 5.834 25 H 0.262 0.738 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.335 0.665 40 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.126 -9.122 3.219 10.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.562 4.562 8 H 0.085 0.915 9 C 0.129 3.871 10 N -0.305 5.305 11 C 0.138 3.862 12 C -0.238 4.238 13 C -0.099 4.099 14 C -0.227 4.227 15 C -0.098 4.098 16 C -0.209 4.209 17 C 0.053 3.947 18 H 0.097 0.903 19 C -0.175 4.175 20 C -0.155 4.155 21 C -0.199 4.199 22 C -0.051 4.051 23 H 0.149 0.851 24 N -0.361 5.361 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.148 0.852 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.742 -8.695 2.633 10.249 hybrid contribution 0.467 0.815 1.107 1.452 sum 5.209 -7.881 3.740 10.160 Atomic orbital electron populations 1.69939 1.05947 1.26842 1.50620 1.24959 0.94776 0.99103 0.95237 0.86560 0.80397 0.83730 0.77546 1.19582 1.20985 1.21159 1.21682 0.93866 0.90452 1.50211 0.91531 1.19229 0.87385 0.82647 0.97876 1.47089 1.46830 1.35836 1.00710 1.17883 0.90962 0.90616 0.86716 1.20548 1.06072 0.99488 0.97707 1.20648 0.98404 0.98468 0.92365 1.20626 1.05246 0.99732 0.97075 1.20805 0.96510 0.95395 0.97053 1.20916 1.06310 1.02832 0.90887 1.21460 0.93860 0.95014 0.84363 0.90254 1.22527 1.00004 0.98724 0.96247 1.22206 0.96454 1.00094 0.96726 1.23283 0.97096 1.00336 0.99176 1.23268 0.86840 1.03714 0.91231 0.85146 1.58759 1.05044 1.08621 1.63670 0.92853 0.95035 0.94893 0.87151 0.87625 0.87837 0.87292 0.85079 0.92271 0.90499 0.92515 0.90858 0.91959 0.92630 0.85225 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -13.71 7.44 -34.44 -0.26 -13.97 16 8 H 0.07 1.83 7.18 -52.49 -0.38 1.45 16 9 C 0.25 6.00 4.21 -5.19 -0.02 5.97 16 10 N -0.60 -12.46 2.53 -164.15 -0.42 -12.88 16 11 C 0.24 5.04 6.54 -83.79 -0.55 4.49 16 12 C -0.22 -3.91 9.31 -39.38 -0.37 -4.28 16 13 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 14 C -0.21 -3.44 10.04 -39.55 -0.40 -3.84 16 15 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 16 C -0.19 -3.91 9.16 -39.38 -0.36 -4.27 16 17 C 0.16 2.79 2.96 -66.70 -0.20 2.59 16 18 H 0.08 1.31 5.07 -51.93 -0.26 1.05 16 19 C -0.14 -2.17 5.97 -25.62 -0.15 -2.32 16 20 C -0.12 -1.74 6.83 -25.07 -0.17 -1.92 16 21 C -0.16 -2.29 6.56 -24.74 -0.16 -2.46 16 22 C 0.06 1.06 3.62 -65.95 -0.24 0.83 16 23 H 0.13 2.82 4.95 -51.93 -0.26 2.57 16 24 N -0.83 -12.89 9.35 -3.17 -0.03 -12.92 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.03 0.83 6.45 -51.93 -0.34 0.49 16 27 H 0.03 0.83 6.56 -51.93 -0.34 0.49 16 28 H 0.11 1.83 5.75 -52.49 -0.30 1.53 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.13 3.01 6.26 -52.49 -0.33 2.68 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.37 6.67 -51.93 -0.35 1.03 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.34 4.64 9.07 -39.29 -0.36 4.29 16 40 H 0.33 4.30 8.80 -39.29 -0.35 3.96 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -27.84 314.15 -9.53 -37.37 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -5.77 Total: 13.08 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -3.77 Total: -21.17 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.29 Total: -50.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.84 -9.53 -37.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226925567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.908 kcal (2) G-P(sol) polarization free energy of solvation -27.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds