Wall clock time and date at job start Mon Mar 30 2020 06:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99580 * 2 1 4 4 H 1.48502 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47411 * 300.00396 * 3 2 1 6 6 H 1.48503 * 109.46845 * 60.00734 * 3 2 1 7 7 C 1.37872 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99691 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46947 * 179.97438 * 9 7 2 11 11 C 1.39673 * 120.00491 * 270.00408 * 10 9 7 12 12 C 1.38907 * 120.07603 * 185.43643 * 11 10 9 13 13 C 1.38102 * 119.92206 * 179.76479 * 12 11 10 14 14 C 1.38291 * 120.07626 * 0.51182 * 13 12 11 15 15 C 1.38278 * 120.14742 * 359.74327 * 14 13 12 16 16 C 1.38110 * 120.07709 * 359.97438 * 15 14 13 17 17 C 1.46505 * 119.99407 * 90.00195 * 10 9 7 18 18 H 1.09002 * 110.01200 * 176.52227 * 17 10 9 19 19 C 1.53875 * 110.03345 * 55.13006 * 17 10 9 20 20 C 1.54260 * 106.59799 * 240.66278 * 19 17 10 21 21 C 1.54892 * 104.19768 * 336.39061 * 20 19 17 22 22 C 1.54466 * 110.16451 * 297.77464 * 17 10 9 23 23 H 1.08999 * 110.39970 * 24.17386 * 22 17 10 24 24 N 1.46900 * 110.66351 * 261.46218 * 22 17 10 25 25 H 0.96997 * 120.00238 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47025 * 60.00525 * 9 7 2 27 27 H 1.08997 * 109.47595 * 300.00413 * 9 7 2 28 28 H 1.07998 * 120.03896 * 0.02562 * 12 11 10 29 29 H 1.08002 * 119.96024 * 180.25000 * 13 12 11 30 30 H 1.08000 * 119.92262 * 179.76300 * 14 13 12 31 31 H 1.07998 * 119.96396 * 179.97438 * 15 14 13 32 32 H 1.08002 * 120.03741 * 179.97438 * 16 15 14 33 33 H 1.08998 * 110.03124 * 121.37732 * 19 17 10 34 34 H 1.09001 * 110.06998 * 359.97438 * 19 17 10 35 35 H 1.09001 * 110.48596 * 217.71262 * 20 19 17 36 36 H 1.08998 * 110.48646 * 95.06787 * 20 19 17 37 37 H 1.09000 * 110.75678 * 156.25266 * 21 20 19 38 38 H 1.09004 * 110.75578 * 279.44372 * 21 20 19 39 39 H 1.00896 * 110.99615 * 183.78254 * 24 22 17 40 40 H 1.00896 * 110.99922 * 307.73976 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 2.6563 -4.1429 -1.2119 12 6 3.4694 -5.2691 -1.2175 13 6 3.9115 -5.7936 -2.4161 14 6 3.5544 -5.1927 -3.6093 15 6 2.7494 -4.0684 -3.6070 16 6 2.2989 -3.5420 -2.4123 17 6 2.6801 -4.1698 1.2665 18 1 3.3294 -5.0248 1.0776 19 6 1.4854 -4.5973 2.1369 20 6 1.5645 -3.7650 3.4333 21 6 3.0579 -3.3676 3.5390 22 6 3.4485 -3.0940 2.0653 23 1 3.1281 -2.0965 1.7647 24 7 4.8977 -3.2476 1.8806 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 3.7520 -5.7364 -0.2858 29 1 4.5405 -6.6716 -2.4213 30 1 3.9047 -5.6027 -4.5450 31 1 2.4726 -3.6013 -4.5406 32 1 1.6706 -2.6636 -2.4112 33 1 1.5548 -5.6597 2.3704 34 1 0.5503 -4.3900 1.6165 35 1 1.2684 -4.3674 4.2920 36 1 0.9380 -2.8765 3.3550 37 1 3.1764 -2.4683 4.1433 38 1 3.6477 -4.1874 3.9491 39 1 5.4066 -2.5867 2.4483 40 1 5.1891 -4.1933 2.0775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226925567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:14 Heat of formation + Delta-G solvation = 11.242268 kcal Electronic energy + Delta-G solvation = -20250.370751 eV Core-core repulsion = 17449.640765 eV Total energy + Delta-G solvation = -2800.729986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75946 -39.08628 -36.18285 -34.57652 -33.45012 -31.76716 -30.59157 -29.57580 -27.62609 -26.80709 -24.69726 -23.05672 -21.95390 -21.54561 -20.21232 -18.68340 -18.49499 -17.25313 -16.71056 -16.32443 -15.88905 -15.84183 -15.25060 -14.98112 -14.77272 -14.32709 -14.14207 -13.84495 -13.79795 -13.16711 -13.12346 -13.08889 -12.74404 -12.54761 -12.49811 -12.19398 -12.00209 -11.95968 -11.77252 -11.55197 -11.44745 -11.02618 -10.58783 -10.41818 -9.61776 -9.40443 -8.30994 -7.72910 -6.27458 0.75355 0.97983 1.33550 1.36958 1.48541 2.35890 2.62921 3.10703 3.22453 3.54747 3.76529 3.97317 4.08810 4.24297 4.31227 4.41509 4.56573 4.59984 4.64731 4.68720 4.76882 4.81192 4.87767 4.95859 4.98059 5.12160 5.17553 5.20394 5.33451 5.38776 5.43163 5.55873 5.68607 5.76884 5.82412 5.93545 6.16537 6.29222 6.38934 6.60938 6.77023 6.94275 7.05880 7.42036 8.88425 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013280 B = 0.009635 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.880778 B = 2905.478814 C = 4153.144933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.051 0.949 9 C 0.272 3.728 10 N -0.608 5.608 11 C 0.217 3.783 12 C -0.215 4.215 13 C -0.074 4.074 14 C -0.200 4.200 15 C -0.083 4.083 16 C -0.222 4.222 17 C 0.155 3.845 18 H 0.097 0.903 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.146 4.146 22 C 0.063 3.937 23 H 0.082 0.918 24 N -0.842 5.842 25 H 0.264 0.736 26 H -0.001 1.001 27 H 0.015 0.985 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.344 0.656 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 -11.245 3.594 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.151 3.849 10 N -0.314 5.314 11 C 0.112 3.888 12 C -0.238 4.238 13 C -0.092 4.092 14 C -0.220 4.220 15 C -0.102 4.102 16 C -0.245 4.245 17 C 0.050 3.950 18 H 0.115 0.885 19 C -0.172 4.172 20 C -0.153 4.153 21 C -0.186 4.186 22 C -0.050 4.050 23 H 0.100 0.900 24 N -0.371 5.371 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.033 0.967 28 H 0.147 0.853 29 H 0.164 0.836 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.157 0.843 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.078 -10.841 3.009 13.292 hybrid contribution -0.204 1.384 0.900 1.664 sum 6.874 -9.457 3.909 12.328 Atomic orbital electron populations 1.70039 1.07172 1.27578 1.51910 1.25667 0.95516 1.02159 0.95224 0.85622 0.78955 0.80105 0.77710 1.19691 1.20743 1.20269 1.21740 0.92997 0.91599 1.49160 0.93110 1.18642 0.87458 0.83556 0.95286 1.46939 1.46820 1.35362 1.02261 1.18196 0.92316 0.91992 0.86275 1.20799 1.05124 0.98381 0.99467 1.21133 0.97599 0.99079 0.91404 1.21050 1.03613 0.98449 0.98856 1.21054 0.96469 0.96101 0.96582 1.20830 1.07878 1.02901 0.92855 1.21712 0.94673 0.95408 0.83195 0.88500 1.22516 0.97948 1.00679 0.96085 1.22183 0.96539 0.99155 0.97383 1.23193 0.96764 1.01483 0.97146 1.22961 0.87949 1.00973 0.93111 0.90043 1.58639 1.04033 1.10062 1.64392 0.92747 0.98269 0.96671 0.85322 0.83615 0.84367 0.85684 0.88880 0.89161 0.93380 0.89477 0.94019 0.91971 0.89469 0.84254 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16 2 C 0.01 0.73 5.46 84.65 0.46 1.19 16 3 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.52 -28.60 7.44 25.60 0.19 -28.41 16 8 H 0.05 2.94 7.18 -2.91 -0.02 2.91 16 9 C 0.27 14.11 4.21 85.63 0.36 14.47 16 10 N -0.61 -26.22 2.53 -673.24 -1.70 -27.93 16 11 C 0.22 9.09 6.54 38.21 0.25 9.34 16 12 C -0.22 -7.36 9.31 22.40 0.21 -7.15 16 13 C -0.07 -2.16 10.04 22.25 0.22 -1.94 16 14 C -0.20 -6.02 10.04 22.29 0.22 -5.79 16 15 C -0.08 -2.98 10.04 22.25 0.22 -2.76 16 16 C -0.22 -9.69 9.16 22.40 0.21 -9.48 16 17 C 0.15 5.37 2.96 45.78 0.14 5.50 16 18 H 0.10 2.98 5.07 -2.39 -0.01 2.97 16 19 C -0.13 -4.18 5.97 31.32 0.19 -3.99 16 20 C -0.11 -3.33 6.83 31.67 0.22 -3.11 16 21 C -0.15 -3.96 6.56 31.89 0.21 -3.75 16 22 C 0.06 2.15 3.62 46.06 0.17 2.32 16 23 H 0.08 3.66 4.95 -2.39 -0.01 3.65 16 24 N -0.84 -24.72 9.35 -163.94 -1.53 -26.25 16 25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.00 -0.04 6.45 -2.39 -0.02 -0.05 16 27 H 0.02 0.84 6.56 -2.39 -0.02 0.82 16 28 H 0.13 3.85 5.75 -2.91 -0.02 3.83 16 29 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.09 4.69 6.26 -2.91 -0.02 4.67 16 33 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.05 1.78 6.67 -2.39 -0.02 1.77 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16 39 H 0.34 9.02 9.07 -89.70 -0.81 8.21 16 40 H 0.34 8.05 8.80 -89.70 -0.79 7.26 16 Total: -1.00 -63.91 314.15 1.79 -62.12 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.55 Total: 32.91 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 3.26 Total: -33.57 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -2.95 Total: -108.32 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -63.91 1.79 -62.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226925567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.363 kcal (2) G-P(sol) polarization free energy of solvation -63.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds