Wall clock time and date at job start Mon Mar 30 2020 06:39:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86804 * 119.99580 * 2 1
4 4 H 1.48502 * 109.47049 * 180.02562 * 3 2 1
5 5 H 1.48495 * 109.47411 * 300.00396 * 3 2 1
6 6 H 1.48503 * 109.46845 * 60.00734 * 3 2 1
7 7 C 1.37872 * 120.00461 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00100 * 179.97438 * 7 2 1
9 9 C 1.50700 * 119.99691 * 359.97438 * 7 2 1
10 10 N 1.46505 * 109.46947 * 179.97438 * 9 7 2
11 11 C 1.39673 * 120.00491 * 270.00408 * 10 9 7
12 12 C 1.38907 * 120.07603 * 185.43643 * 11 10 9
13 13 C 1.38102 * 119.92206 * 179.76479 * 12 11 10
14 14 C 1.38291 * 120.07626 * 0.51182 * 13 12 11
15 15 C 1.38278 * 120.14742 * 359.74327 * 14 13 12
16 16 C 1.38110 * 120.07709 * 359.97438 * 15 14 13
17 17 C 1.46505 * 119.99407 * 90.00195 * 10 9 7
18 18 H 1.09002 * 110.01200 * 176.52227 * 17 10 9
19 19 C 1.53875 * 110.03345 * 55.13006 * 17 10 9
20 20 C 1.54260 * 106.59799 * 240.66278 * 19 17 10
21 21 C 1.54892 * 104.19768 * 336.39061 * 20 19 17
22 22 C 1.54466 * 110.16451 * 297.77464 * 17 10 9
23 23 H 1.08999 * 110.39970 * 24.17386 * 22 17 10
24 24 N 1.46900 * 110.66351 * 261.46218 * 22 17 10
25 25 H 0.96997 * 120.00238 * 359.97438 * 1 2 3
26 26 H 1.08999 * 109.47025 * 60.00525 * 9 7 2
27 27 H 1.08997 * 109.47595 * 300.00413 * 9 7 2
28 28 H 1.07998 * 120.03896 * 0.02562 * 12 11 10
29 29 H 1.08002 * 119.96024 * 180.25000 * 13 12 11
30 30 H 1.08000 * 119.92262 * 179.76300 * 14 13 12
31 31 H 1.07998 * 119.96396 * 179.97438 * 15 14 13
32 32 H 1.08002 * 120.03741 * 179.97438 * 16 15 14
33 33 H 1.08998 * 110.03124 * 121.37732 * 19 17 10
34 34 H 1.09001 * 110.06998 * 359.97438 * 19 17 10
35 35 H 1.09001 * 110.48596 * 217.71262 * 20 19 17
36 36 H 1.08998 * 110.48646 * 95.06787 * 20 19 17
37 37 H 1.09000 * 110.75678 * 156.25266 * 21 20 19
38 38 H 1.09004 * 110.75578 * 279.44372 * 21 20 19
39 39 H 1.00896 * 110.99615 * 183.78254 * 24 22 17
40 40 H 1.00896 * 110.99922 * 307.73976 * 24 22 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.7091 1.3466 -0.0006
5 1 1.8902 2.3966 -1.2124
6 1 1.8903 2.3964 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 7 2.2032 -3.6126 -0.0018
11 6 2.6563 -4.1429 -1.2119
12 6 3.4694 -5.2691 -1.2175
13 6 3.9115 -5.7936 -2.4161
14 6 3.5544 -5.1927 -3.6093
15 6 2.7494 -4.0684 -3.6070
16 6 2.2989 -3.5420 -2.4123
17 6 2.6801 -4.1698 1.2665
18 1 3.3294 -5.0248 1.0776
19 6 1.4854 -4.5973 2.1369
20 6 1.5645 -3.7650 3.4333
21 6 3.0579 -3.3676 3.5390
22 6 3.4485 -3.0940 2.0653
23 1 3.1281 -2.0965 1.7647
24 7 4.8977 -3.2476 1.8806
25 1 -0.4850 0.8400 0.0004
26 1 0.6242 -2.5567 -0.8903
27 1 0.6247 -2.5571 0.8896
28 1 3.7520 -5.7364 -0.2858
29 1 4.5405 -6.6716 -2.4213
30 1 3.9047 -5.6027 -4.5450
31 1 2.4726 -3.6013 -4.5406
32 1 1.6706 -2.6636 -2.4112
33 1 1.5548 -5.6597 2.3704
34 1 0.5503 -4.3900 1.6165
35 1 1.2684 -4.3674 4.2920
36 1 0.9380 -2.8765 3.3550
37 1 3.1764 -2.4683 4.1433
38 1 3.6477 -4.1874 3.9491
39 1 5.4066 -2.5867 2.4483
40 1 5.1891 -4.1933 2.0775
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000226925567.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:39:14
Heat of formation + Delta-G solvation = 11.242268 kcal
Electronic energy + Delta-G solvation = -20250.370751 eV
Core-core repulsion = 17449.640765 eV
Total energy + Delta-G solvation = -2800.729986 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.75946 -39.08628 -36.18285 -34.57652 -33.45012 -31.76716 -30.59157 -29.57580
-27.62609 -26.80709 -24.69726 -23.05672 -21.95390 -21.54561 -20.21232 -18.68340
-18.49499 -17.25313 -16.71056 -16.32443 -15.88905 -15.84183 -15.25060 -14.98112
-14.77272 -14.32709 -14.14207 -13.84495 -13.79795 -13.16711 -13.12346 -13.08889
-12.74404 -12.54761 -12.49811 -12.19398 -12.00209 -11.95968 -11.77252 -11.55197
-11.44745 -11.02618 -10.58783 -10.41818 -9.61776 -9.40443 -8.30994 -7.72910
-6.27458 0.75355 0.97983 1.33550 1.36958 1.48541 2.35890 2.62921
3.10703 3.22453 3.54747 3.76529 3.97317 4.08810 4.24297 4.31227
4.41509 4.56573 4.59984 4.64731 4.68720 4.76882 4.81192 4.87767
4.95859 4.98059 5.12160 5.17553 5.20394 5.33451 5.38776 5.43163
5.55873 5.68607 5.76884 5.82412 5.93545 6.16537 6.29222 6.38934
6.60938 6.77023 6.94275 7.05880 7.42036 8.88425
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.013280 B = 0.009635 C = 0.006740
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2107.880778 B = 2905.478814 C = 4153.144933
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.013 3.987
3 Si 0.950 3.050
4 H -0.272 1.272
5 H -0.282 1.282
6 H -0.277 1.277
7 C -0.516 4.516
8 H 0.051 0.949
9 C 0.272 3.728
10 N -0.608 5.608
11 C 0.217 3.783
12 C -0.215 4.215
13 C -0.074 4.074
14 C -0.200 4.200
15 C -0.083 4.083
16 C -0.222 4.222
17 C 0.155 3.845
18 H 0.097 0.903
19 C -0.133 4.133
20 C -0.114 4.114
21 C -0.146 4.146
22 C 0.063 3.937
23 H 0.082 0.918
24 N -0.842 5.842
25 H 0.264 0.736
26 H -0.001 1.001
27 H 0.015 0.985
28 H 0.129 0.871
29 H 0.146 0.854
30 H 0.139 0.861
31 H 0.125 0.875
32 H 0.093 0.907
33 H 0.090 0.910
34 H 0.047 0.953
35 H 0.087 0.913
36 H 0.041 0.959
37 H 0.061 0.939
38 H 0.087 0.913
39 H 0.344 0.656
40 H 0.343 0.657
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.436 -11.245 3.594 13.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.186 4.186
3 Si 0.776 3.224
4 H -0.197 1.197
5 H -0.207 1.207
6 H -0.203 1.203
7 C -0.555 4.555
8 H 0.069 0.931
9 C 0.151 3.849
10 N -0.314 5.314
11 C 0.112 3.888
12 C -0.238 4.238
13 C -0.092 4.092
14 C -0.220 4.220
15 C -0.102 4.102
16 C -0.245 4.245
17 C 0.050 3.950
18 H 0.115 0.885
19 C -0.172 4.172
20 C -0.153 4.153
21 C -0.186 4.186
22 C -0.050 4.050
23 H 0.100 0.900
24 N -0.371 5.371
25 H 0.073 0.927
26 H 0.017 0.983
27 H 0.033 0.967
28 H 0.147 0.853
29 H 0.164 0.836
30 H 0.156 0.844
31 H 0.143 0.857
32 H 0.111 0.889
33 H 0.108 0.892
34 H 0.066 0.934
35 H 0.105 0.895
36 H 0.060 0.940
37 H 0.080 0.920
38 H 0.105 0.895
39 H 0.157 0.843
40 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 7.078 -10.841 3.009 13.292
hybrid contribution -0.204 1.384 0.900 1.664
sum 6.874 -9.457 3.909 12.328
Atomic orbital electron populations
1.70039 1.07172 1.27578 1.51910 1.25667 0.95516 1.02159 0.95224
0.85622 0.78955 0.80105 0.77710 1.19691 1.20743 1.20269 1.21740
0.92997 0.91599 1.49160 0.93110 1.18642 0.87458 0.83556 0.95286
1.46939 1.46820 1.35362 1.02261 1.18196 0.92316 0.91992 0.86275
1.20799 1.05124 0.98381 0.99467 1.21133 0.97599 0.99079 0.91404
1.21050 1.03613 0.98449 0.98856 1.21054 0.96469 0.96101 0.96582
1.20830 1.07878 1.02901 0.92855 1.21712 0.94673 0.95408 0.83195
0.88500 1.22516 0.97948 1.00679 0.96085 1.22183 0.96539 0.99155
0.97383 1.23193 0.96764 1.01483 0.97146 1.22961 0.87949 1.00973
0.93111 0.90043 1.58639 1.04033 1.10062 1.64392 0.92747 0.98269
0.96671 0.85322 0.83615 0.84367 0.85684 0.88880 0.89161 0.93380
0.89477 0.94019 0.91971 0.89469 0.84254 0.84297
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16
2 C 0.01 0.73 5.46 84.65 0.46 1.19 16
3 Si 0.95 44.84 29.54 68.60 2.03 46.87 16
4 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16
5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
7 C -0.52 -28.60 7.44 25.60 0.19 -28.41 16
8 H 0.05 2.94 7.18 -2.91 -0.02 2.91 16
9 C 0.27 14.11 4.21 85.63 0.36 14.47 16
10 N -0.61 -26.22 2.53 -673.24 -1.70 -27.93 16
11 C 0.22 9.09 6.54 38.21 0.25 9.34 16
12 C -0.22 -7.36 9.31 22.40 0.21 -7.15 16
13 C -0.07 -2.16 10.04 22.25 0.22 -1.94 16
14 C -0.20 -6.02 10.04 22.29 0.22 -5.79 16
15 C -0.08 -2.98 10.04 22.25 0.22 -2.76 16
16 C -0.22 -9.69 9.16 22.40 0.21 -9.48 16
17 C 0.15 5.37 2.96 45.78 0.14 5.50 16
18 H 0.10 2.98 5.07 -2.39 -0.01 2.97 16
19 C -0.13 -4.18 5.97 31.32 0.19 -3.99 16
20 C -0.11 -3.33 6.83 31.67 0.22 -3.11 16
21 C -0.15 -3.96 6.56 31.89 0.21 -3.75 16
22 C 0.06 2.15 3.62 46.06 0.17 2.32 16
23 H 0.08 3.66 4.95 -2.39 -0.01 3.65 16
24 N -0.84 -24.72 9.35 -163.94 -1.53 -26.25 16
25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16
26 H 0.00 -0.04 6.45 -2.39 -0.02 -0.05 16
27 H 0.02 0.84 6.56 -2.39 -0.02 0.82 16
28 H 0.13 3.85 5.75 -2.91 -0.02 3.83 16
29 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16
30 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16
31 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16
32 H 0.09 4.69 6.26 -2.91 -0.02 4.67 16
33 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16
34 H 0.05 1.78 6.67 -2.39 -0.02 1.77 16
35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16
36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
38 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16
39 H 0.34 9.02 9.07 -89.70 -0.81 8.21 16
40 H 0.34 8.05 8.80 -89.70 -0.79 7.26 16
Total: -1.00 -63.91 314.15 1.79 -62.12
By element:
Atomic # 1 Polarization: 33.45 SS G_CDS: -0.55 Total: 32.91 kcal
Atomic # 6 Polarization: -36.83 SS G_CDS: 3.26 Total: -33.57 kcal
Atomic # 7 Polarization: -105.37 SS G_CDS: -2.95 Total: -108.32 kcal
Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal
Total: -63.91 1.79 -62.12 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226925567.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.363 kcal
(2) G-P(sol) polarization free energy of solvation -63.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.451 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.121 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.242 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds