Wall clock time and date at job start Mon Mar 30 2020 07:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 H 1.09000 * 109.47444 * 305.20499 * 3 2 1 5 5 C 1.50705 * 109.47450 * 185.20211 * 3 2 1 6 6 H 1.07994 * 120.00425 * 245.41731 * 5 3 2 7 7 C 1.37877 * 119.99438 * 65.41126 * 5 3 2 8 8 N 1.31514 * 119.99533 * 196.40122 * 7 5 3 9 9 Si 1.86798 * 120.00396 * 16.40139 * 7 5 3 10 10 H 1.48500 * 109.47337 * 85.99409 * 9 7 5 11 11 H 1.48499 * 109.47063 * 205.99510 * 9 7 5 12 12 H 1.48504 * 109.46936 * 325.99467 * 9 7 5 13 13 N 1.46901 * 109.47245 * 65.20528 * 3 2 1 14 14 C 1.46900 * 110.99817 * 262.86078 * 13 3 2 15 15 H 1.08996 * 110.27086 * 26.08796 * 14 13 3 16 16 C 1.54348 * 110.38557 * 148.22498 * 14 13 3 17 17 C 1.54348 * 102.39194 * 92.61662 * 16 14 13 18 18 H 1.08997 * 110.30364 * 145.27105 * 17 16 14 19 19 N 1.46902 * 110.29873 * 267.42097 * 17 16 14 20 20 C 1.51362 * 105.17250 * 26.34734 * 17 16 14 21 21 C 1.38501 * 130.39931 * 162.81745 * 20 17 16 22 22 C 1.38100 * 120.22381 * 180.02562 * 21 20 17 23 23 C 1.38260 * 119.93264 * 359.97438 * 22 21 20 24 24 C 1.38108 * 119.93158 * 0.25519 * 23 22 21 25 25 C 1.38220 * 109.76004 * 342.81334 * 20 17 16 26 26 H 1.09008 * 109.47020 * 178.15071 * 1 2 3 27 27 H 1.08996 * 109.47524 * 298.15492 * 1 2 3 28 28 H 1.09007 * 109.47002 * 58.15805 * 1 2 3 29 29 H 1.09001 * 109.47617 * 240.00071 * 2 1 3 30 30 H 1.09005 * 109.47181 * 119.99625 * 2 1 3 31 31 H 0.97008 * 120.00119 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00263 * 138.90324 * 13 3 2 33 33 H 1.09008 * 110.82145 * 210.84064 * 16 14 13 34 34 H 1.08993 * 110.82566 * 334.19014 * 16 14 13 35 35 H 1.00901 * 110.99411 * 177.20410 * 19 17 16 36 36 H 1.00899 * 110.99945 * 301.15489 * 19 17 16 37 37 H 1.08008 * 119.88425 * 359.97438 * 21 20 17 38 38 H 1.07990 * 120.03734 * 180.02562 * 22 21 20 39 39 H 1.07994 * 120.03235 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.88773 * 179.74469 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6025 1.9826 -0.8397 5 6 3.5414 1.4446 -0.1288 6 1 4.1527 1.8085 0.6837 7 6 4.1348 0.9817 -1.2841 8 7 5.4144 0.6781 -1.2900 9 14 3.1212 0.7858 -2.8409 10 1 3.0829 2.0776 -3.5725 11 1 3.7363 -0.2540 -3.7044 12 1 1.7387 0.3782 -2.4835 13 7 1.6555 2.0978 1.2573 14 6 0.4291 2.8879 1.0856 15 1 -0.1699 2.4830 0.2700 16 6 -0.3886 2.9028 2.3946 17 6 0.1228 4.1823 3.0901 18 1 -0.6853 4.6609 3.6431 19 7 1.2381 3.8616 3.9908 20 6 0.5957 5.0812 1.9679 21 6 0.8519 6.4422 1.9554 22 6 1.2816 7.0581 0.7964 23 6 1.4575 6.3143 -0.3557 24 6 1.1980 4.9578 -0.3465 25 6 0.7716 4.3376 0.8161 26 1 -0.3633 -1.0272 -0.0332 27 1 -0.3634 0.4849 0.9060 28 1 -0.3633 0.5422 -0.8731 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 5.8318 0.3521 -2.1027 32 1 2.4075 2.6697 1.6117 33 1 -1.4556 2.9763 2.1841 34 1 -0.1740 2.0192 2.9956 35 1 1.6105 4.6971 4.4168 36 1 0.9560 3.1932 4.6920 37 1 0.7143 7.0240 2.8549 38 1 1.4809 8.1194 0.7902 39 1 1.7931 6.7943 -1.2630 40 1 1.3317 4.3782 -1.2480 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227540463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:46 Heat of formation + Delta-G solvation = 28.310256 kcal Electronic energy + Delta-G solvation = -20171.874751 eV Core-core repulsion = 17371.884888 eV Total energy + Delta-G solvation = -2799.989863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10028 -36.65211 -35.40977 -32.72901 -31.74054 -30.30595 -29.89727 -28.54414 -26.77020 -24.27266 -22.45413 -22.33967 -20.40878 -19.97782 -19.53499 -16.99403 -15.99479 -15.83824 -15.44425 -14.98348 -14.75519 -14.37076 -13.90829 -13.45065 -13.01292 -12.95878 -12.68301 -12.52968 -12.28970 -11.95769 -11.84955 -11.37520 -11.30485 -11.04065 -10.97001 -10.76098 -10.66504 -10.42578 -10.02244 -9.77691 -9.34219 -9.06231 -8.65445 -8.52240 -8.36890 -8.29997 -7.27475 -6.07844 -4.01197 1.61437 1.67551 3.29377 3.38755 3.41600 4.00771 4.44465 4.61762 4.77513 4.83636 5.20340 5.21944 5.23464 5.31125 5.35876 5.49925 5.74478 5.77179 5.92323 6.04992 6.07350 6.12275 6.23277 6.30174 6.32495 6.32901 6.45573 6.66532 6.72128 6.79582 6.84272 6.99113 7.10086 7.13191 7.25665 7.33285 7.53364 7.60664 7.74550 8.09104 8.52224 8.72575 9.04621 9.59193 11.05389 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.007630 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.774608 B = 3668.910842 C = 4275.878885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.191 3.809 4 H -0.001 1.001 5 C -0.526 4.526 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.860 3.140 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.252 1.252 13 N -0.653 5.653 14 C 0.128 3.872 15 H 0.077 0.923 16 C -0.108 4.108 17 C 0.135 3.865 18 H 0.034 0.966 19 N -0.826 5.826 20 C -0.090 4.090 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.096 4.096 25 C -0.099 4.099 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.263 0.737 32 H 0.351 0.649 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.336 0.664 36 H 0.343 0.657 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.489 8.909 6.318 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C 0.082 3.918 4 H 0.017 0.983 5 C -0.564 4.564 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.687 3.313 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.176 1.176 13 N -0.283 5.283 14 C 0.017 3.983 15 H 0.095 0.905 16 C -0.147 4.147 17 C 0.024 3.976 18 H 0.052 0.948 19 N -0.357 5.357 20 C -0.091 4.091 21 C -0.128 4.128 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.115 4.115 25 C -0.101 4.101 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.171 0.829 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.289 7.949 5.814 15.749 hybrid contribution -0.466 1.175 -0.838 1.516 sum -12.755 9.124 4.977 16.453 Atomic orbital electron populations 1.21901 0.98826 0.99454 1.00532 1.21860 0.92515 0.99531 1.00864 1.19490 0.95391 0.90607 0.86361 0.98336 1.21187 0.89455 1.43176 1.02537 0.90652 1.24880 0.94681 0.94175 0.98725 1.69998 1.11587 1.43173 1.28024 0.87262 0.82155 0.77919 0.83989 1.20733 1.21532 1.17601 1.60730 1.05624 1.32244 1.29694 1.21141 0.94267 0.86810 0.96082 0.90542 1.22447 0.97687 0.97316 0.97241 1.20685 0.91033 0.94072 0.91810 0.94781 1.58558 1.35003 1.17154 1.24997 1.20434 1.00011 0.93044 0.95626 1.20507 1.00873 0.93563 0.97844 1.20910 1.01156 0.99401 0.93090 1.21027 1.00338 0.94071 0.98250 1.20758 0.98491 0.94358 0.97860 1.21493 0.97651 0.97722 0.93234 0.94731 0.92487 0.94585 0.93224 0.92236 0.92769 0.82902 0.91536 0.89049 0.85163 0.84369 0.87134 0.86455 0.86283 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.66 37.16 0.32 -2.42 16 2 C -0.11 -2.42 4.95 -26.73 -0.13 -2.55 16 3 C 0.19 4.45 1.70 -68.86 -0.12 4.34 16 4 H 0.00 -0.02 6.18 -51.93 -0.32 -0.34 16 5 C -0.53 -14.70 8.98 -34.44 -0.31 -15.01 16 6 H 0.08 2.32 7.74 -52.49 -0.41 1.91 16 7 C 0.08 2.25 5.32 -17.82 -0.09 2.15 16 8 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 9 Si 0.86 21.31 25.85 -169.99 -4.39 16.91 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.25 -5.89 5.58 56.52 0.32 -5.58 16 13 N -0.65 -13.31 5.98 -101.07 -0.60 -13.91 16 14 C 0.13 2.21 1.97 -67.83 -0.13 2.07 16 15 H 0.08 1.36 6.05 -51.93 -0.31 1.05 16 16 C -0.11 -1.52 6.33 -25.32 -0.16 -1.68 16 17 C 0.13 1.77 3.99 -67.83 -0.27 1.50 16 18 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 19 N -0.83 -10.37 9.27 -4.77 -0.04 -10.42 16 20 C -0.09 -1.36 5.76 -104.21 -0.60 -1.96 16 21 C -0.11 -1.49 10.04 -39.54 -0.40 -1.89 16 22 C -0.13 -1.72 10.05 -39.62 -0.40 -2.12 16 23 C -0.12 -1.79 10.05 -39.62 -0.40 -2.18 16 24 C -0.10 -1.67 10.04 -39.53 -0.40 -2.07 16 25 C -0.10 -1.70 5.41 -104.20 -0.56 -2.26 16 26 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 27 H 0.06 0.97 6.52 -51.93 -0.34 0.64 16 28 H 0.04 0.64 7.98 -51.92 -0.41 0.23 16 29 H 0.05 1.16 5.06 -51.93 -0.26 0.90 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.35 7.84 7.61 -39.29 -0.30 7.54 16 33 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.09 1.31 7.97 -51.93 -0.41 0.89 16 35 H 0.34 3.73 9.06 -39.29 -0.36 3.38 16 36 H 0.34 3.70 8.99 -39.29 -0.35 3.34 16 37 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -30.14 314.37 -9.26 -39.41 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.08 Total: 13.82 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -3.65 Total: -24.08 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.13 Total: -50.80 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.39 Total: 16.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.14 -9.26 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227540463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.720 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds