Wall clock time and date at job start Mon Mar 30 2020 07:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 H 1.09000 * 109.47444 * 305.20499 * 3 2 1 5 5 C 1.50705 * 109.47450 * 185.20211 * 3 2 1 6 6 H 1.07994 * 120.00425 * 245.41731 * 5 3 2 7 7 C 1.37877 * 119.99438 * 65.41126 * 5 3 2 8 8 N 1.31514 * 119.99533 * 196.40122 * 7 5 3 9 9 Si 1.86798 * 120.00396 * 16.40139 * 7 5 3 10 10 H 1.48500 * 109.47337 * 85.99409 * 9 7 5 11 11 H 1.48499 * 109.47063 * 205.99510 * 9 7 5 12 12 H 1.48504 * 109.46936 * 325.99467 * 9 7 5 13 13 N 1.46901 * 109.47245 * 65.20528 * 3 2 1 14 14 C 1.46900 * 110.99817 * 262.86078 * 13 3 2 15 15 H 1.08996 * 110.27086 * 26.08796 * 14 13 3 16 16 C 1.54348 * 110.38557 * 148.22498 * 14 13 3 17 17 C 1.54348 * 102.39194 * 92.61662 * 16 14 13 18 18 H 1.08997 * 110.30364 * 145.27105 * 17 16 14 19 19 N 1.46902 * 110.29873 * 267.42097 * 17 16 14 20 20 C 1.51362 * 105.17250 * 26.34734 * 17 16 14 21 21 C 1.38501 * 130.39931 * 162.81745 * 20 17 16 22 22 C 1.38100 * 120.22381 * 180.02562 * 21 20 17 23 23 C 1.38260 * 119.93264 * 359.97438 * 22 21 20 24 24 C 1.38108 * 119.93158 * 0.25519 * 23 22 21 25 25 C 1.38220 * 109.76004 * 342.81334 * 20 17 16 26 26 H 1.09008 * 109.47020 * 178.15071 * 1 2 3 27 27 H 1.08996 * 109.47524 * 298.15492 * 1 2 3 28 28 H 1.09007 * 109.47002 * 58.15805 * 1 2 3 29 29 H 1.09001 * 109.47617 * 240.00071 * 2 1 3 30 30 H 1.09005 * 109.47181 * 119.99625 * 2 1 3 31 31 H 0.97008 * 120.00119 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00263 * 138.90324 * 13 3 2 33 33 H 1.09008 * 110.82145 * 210.84064 * 16 14 13 34 34 H 1.08993 * 110.82566 * 334.19014 * 16 14 13 35 35 H 1.00901 * 110.99411 * 177.20410 * 19 17 16 36 36 H 1.00899 * 110.99945 * 301.15489 * 19 17 16 37 37 H 1.08008 * 119.88425 * 359.97438 * 21 20 17 38 38 H 1.07990 * 120.03734 * 180.02562 * 22 21 20 39 39 H 1.07994 * 120.03235 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.88773 * 179.74469 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6025 1.9826 -0.8397 5 6 3.5414 1.4446 -0.1288 6 1 4.1527 1.8085 0.6837 7 6 4.1348 0.9817 -1.2841 8 7 5.4144 0.6781 -1.2900 9 14 3.1212 0.7858 -2.8409 10 1 3.0829 2.0776 -3.5725 11 1 3.7363 -0.2540 -3.7044 12 1 1.7387 0.3782 -2.4835 13 7 1.6555 2.0978 1.2573 14 6 0.4291 2.8879 1.0856 15 1 -0.1699 2.4830 0.2700 16 6 -0.3886 2.9028 2.3946 17 6 0.1228 4.1823 3.0901 18 1 -0.6853 4.6609 3.6431 19 7 1.2381 3.8616 3.9908 20 6 0.5957 5.0812 1.9679 21 6 0.8519 6.4422 1.9554 22 6 1.2816 7.0581 0.7964 23 6 1.4575 6.3143 -0.3557 24 6 1.1980 4.9578 -0.3465 25 6 0.7716 4.3376 0.8161 26 1 -0.3633 -1.0272 -0.0332 27 1 -0.3634 0.4849 0.9060 28 1 -0.3633 0.5422 -0.8731 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 5.8318 0.3521 -2.1027 32 1 2.4075 2.6697 1.6117 33 1 -1.4556 2.9763 2.1841 34 1 -0.1740 2.0192 2.9956 35 1 1.6105 4.6971 4.4168 36 1 0.9560 3.1932 4.6920 37 1 0.7143 7.0240 2.8549 38 1 1.4809 8.1194 0.7902 39 1 1.7931 6.7943 -1.2630 40 1 1.3317 4.3782 -1.2480 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227540463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:45 Heat of formation + Delta-G solvation = 6.754345 kcal Electronic energy + Delta-G solvation = -20172.809485 eV Core-core repulsion = 17371.884888 eV Total energy + Delta-G solvation = -2800.924597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28815 -38.13186 -36.74589 -34.48086 -33.45094 -31.45402 -31.32404 -29.83787 -28.45457 -25.64415 -24.18397 -23.54917 -21.66106 -21.36273 -21.10105 -18.96820 -17.46804 -17.07237 -16.56705 -16.52213 -15.94096 -15.66023 -15.54359 -14.92077 -14.75736 -14.37641 -14.07219 -13.97661 -13.66576 -13.46298 -13.40948 -12.94182 -12.77778 -12.52581 -12.31846 -12.21130 -12.06386 -11.90221 -11.69458 -11.45420 -11.15335 -11.06295 -10.54946 -9.78749 -9.70900 -9.31901 -8.88356 -8.32472 -6.29675 0.46611 0.49903 1.30038 1.32965 1.43258 2.32820 2.84726 3.02173 3.51285 3.56539 3.73608 4.01920 4.13778 4.19108 4.26345 4.31790 4.49427 4.51232 4.56757 4.63646 4.66574 4.79133 4.92221 4.93678 5.06693 5.11772 5.17536 5.22065 5.30539 5.35624 5.45463 5.56228 5.59502 5.63608 5.79930 5.85342 6.07405 6.13724 6.41327 6.57622 6.75715 6.76981 6.94077 7.35198 8.84531 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.007630 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.774608 B = 3668.910842 C = 4275.878885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.200 3.800 4 H -0.007 1.007 5 C -0.528 4.528 6 H 0.031 0.969 7 C 0.023 3.977 8 N -0.939 5.939 9 Si 0.922 3.078 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.229 1.229 13 N -0.647 5.647 14 C 0.124 3.876 15 H 0.069 0.931 16 C -0.102 4.102 17 C 0.140 3.860 18 H 0.061 0.939 19 N -0.842 5.842 20 C -0.093 4.093 21 C -0.109 4.109 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.126 4.126 25 C -0.127 4.127 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.336 0.664 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.345 0.655 36 H 0.353 0.647 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.134 0.866 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.142 10.125 7.033 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C 0.090 3.910 4 H 0.011 0.989 5 C -0.566 4.566 6 H 0.049 0.951 7 C -0.175 4.175 8 N -0.579 5.579 9 Si 0.746 3.254 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.151 1.151 13 N -0.276 5.276 14 C 0.013 3.987 15 H 0.087 0.913 16 C -0.140 4.140 17 C 0.030 3.970 18 H 0.079 0.921 19 N -0.375 5.375 20 C -0.095 4.095 21 C -0.127 4.127 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.129 4.129 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.978 9.169 6.549 18.743 hybrid contribution 0.427 0.890 -0.974 1.387 sum -14.551 10.059 5.574 18.547 Atomic orbital electron populations 1.21790 0.95332 1.01204 1.01369 1.21759 0.95616 0.97833 0.99572 1.19315 0.92132 0.91925 0.87655 0.98920 1.21469 0.91878 1.42099 1.01188 0.95079 1.25701 0.95726 0.94029 1.02072 1.70132 1.13657 1.45077 1.29025 0.86246 0.81648 0.77953 0.79515 1.20388 1.21259 1.15141 1.60748 1.06159 1.32919 1.27765 1.21258 0.92806 0.86745 0.97855 0.91286 1.22436 0.98387 0.97912 0.95245 1.20646 0.91726 0.93214 0.91461 0.92093 1.58505 1.35280 1.18059 1.25619 1.20751 0.99482 0.93857 0.95380 1.20922 0.99497 0.93256 0.99059 1.21326 0.99554 1.00923 0.92272 1.21282 1.00288 0.93327 0.99829 1.20830 1.00534 0.95619 0.97545 1.21543 0.99299 0.97892 0.94187 0.92482 0.91294 0.94163 0.94677 0.93454 0.92660 0.84546 0.89224 0.89273 0.84194 0.83240 0.83936 0.83190 0.84816 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 8.66 71.98 0.62 -4.17 16 2 C -0.11 -4.79 4.95 30.59 0.15 -4.64 16 3 C 0.20 9.46 1.70 44.17 0.07 9.54 16 4 H -0.01 -0.33 6.18 -2.39 -0.01 -0.34 16 5 C -0.53 -30.81 8.98 25.60 0.23 -30.58 16 6 H 0.03 2.04 7.74 -2.91 -0.02 2.01 16 7 C 0.02 1.37 5.32 84.65 0.45 1.82 16 8 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16 9 Si 0.92 44.79 25.85 68.60 1.77 46.56 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.23 -10.15 5.58 99.48 0.56 -9.59 16 13 N -0.65 -26.67 5.98 -473.68 -2.83 -29.50 16 14 C 0.12 4.17 1.97 44.84 0.09 4.26 16 15 H 0.07 2.40 6.05 -2.39 -0.01 2.38 16 16 C -0.10 -2.60 6.33 31.51 0.20 -2.40 16 17 C 0.14 3.29 3.99 44.84 0.18 3.47 16 18 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 19 N -0.84 -19.42 9.27 -169.00 -1.57 -20.98 16 20 C -0.09 -2.62 5.76 -19.60 -0.11 -2.73 16 21 C -0.11 -2.64 10.04 22.30 0.22 -2.41 16 22 C -0.12 -2.99 10.05 22.24 0.22 -2.77 16 23 C -0.13 -3.77 10.05 22.24 0.22 -3.55 16 24 C -0.13 -4.46 10.04 22.30 0.22 -4.24 16 25 C -0.13 -4.31 5.41 -19.59 -0.11 -4.41 16 26 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.07 2.19 6.52 -2.39 -0.02 2.18 16 28 H 0.04 1.34 7.98 -2.38 -0.02 1.32 16 29 H 0.03 1.62 5.06 -2.39 -0.01 1.60 16 30 H 0.05 2.15 8.14 -2.38 -0.02 2.14 16 31 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 32 H 0.34 15.54 7.61 -89.70 -0.68 14.85 16 33 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.09 2.34 7.97 -2.39 -0.02 2.32 16 35 H 0.34 6.85 9.06 -89.69 -0.81 6.04 16 36 H 0.35 6.86 8.99 -89.69 -0.81 6.05 16 37 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.15 2.64 8.06 -2.92 -0.02 2.61 16 39 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 40 H 0.10 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -67.97 314.37 -1.04 -69.02 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -1.39 Total: 37.13 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 2.67 Total: -42.82 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.10 Total: -109.89 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.77 Total: 46.56 kcal Total: -67.97 -1.04 -69.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227540463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.770 kcal (2) G-P(sol) polarization free energy of solvation -67.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds