Wall clock time and date at job start Mon Mar 30 2020 07:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46858 * 2 1 4 4 H 1.09004 * 109.47504 * 53.16418 * 3 2 1 5 5 C 1.50703 * 109.46863 * 173.15765 * 3 2 1 6 6 H 1.08008 * 119.99759 * 114.16865 * 5 3 2 7 7 C 1.37873 * 120.00069 * 294.17098 * 5 3 2 8 8 N 1.31512 * 120.00494 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99915 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46906 * 119.99863 * 9 7 5 12 12 H 1.48500 * 109.46934 * 240.00166 * 9 7 5 13 13 N 1.46900 * 109.47305 * 293.15555 * 3 2 1 14 14 C 1.47163 * 110.99574 * 76.91013 * 13 3 2 15 15 C 1.52887 * 108.66906 * 52.09945 * 14 13 3 16 16 C 1.51177 * 109.73215 * 50.33327 * 15 14 13 17 17 C 1.38748 * 118.37678 * 163.32696 * 16 15 14 18 18 C 1.38083 * 120.50301 * 179.66897 * 17 16 15 19 19 C 1.38126 * 119.91276 * 0.02562 * 18 17 16 20 20 C 1.38696 * 119.78414 * 0.09185 * 19 18 17 21 21 N 1.39672 * 119.88904 * 179.97438 * 20 19 18 22 22 C 1.37694 * 121.72246 * 343.18153 * 16 15 14 23 23 C 1.46634 * 110.99959 * 199.88520 * 13 3 2 24 24 H 1.09007 * 109.46738 * 326.30041 * 1 2 3 25 25 H 1.08998 * 109.47006 * 86.30235 * 1 2 3 26 26 H 1.09002 * 109.46921 * 206.30463 * 1 2 3 27 27 H 1.08993 * 109.46746 * 240.00108 * 2 1 3 28 28 H 1.09001 * 109.46844 * 120.00161 * 2 1 3 29 29 H 0.96993 * 120.00655 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.63407 * 171.90109 * 14 13 3 31 31 H 1.09005 * 109.63234 * 292.29363 * 14 13 3 32 32 H 1.08999 * 109.39441 * 170.66743 * 15 14 13 33 33 H 1.09005 * 109.39029 * 290.36398 * 15 14 13 34 34 H 1.07993 * 119.74847 * 359.64083 * 17 16 15 35 35 H 1.08006 * 120.03839 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.10775 * 180.02562 * 19 18 17 37 37 H 0.96996 * 119.99820 * 180.02562 * 21 20 19 38 38 H 0.96998 * 120.00079 * 0.02562 * 21 20 19 39 39 H 1.08997 * 109.26752 * 49.34251 * 23 13 3 40 40 H 1.09004 * 109.26333 * 168.85080 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 1.9905 0.8225 5 6 3.5375 1.4459 0.1693 6 1 4.1708 1.7959 -0.6326 7 6 4.0990 1.0021 1.3477 8 7 3.3280 0.5755 2.3239 9 14 5.9553 1.0057 1.5572 10 1 6.5919 1.5290 0.3218 11 1 6.3220 1.8709 2.7071 12 1 6.4276 -0.3794 1.8094 13 7 1.6897 2.0857 -1.2734 14 6 0.2677 2.4637 -1.2996 15 6 -0.0449 3.2800 -0.0453 16 6 0.9691 4.3910 0.1065 17 6 0.6716 5.4431 0.9608 18 6 1.5690 6.4775 1.1376 19 6 2.7727 6.4685 0.4602 20 6 3.0733 5.4201 -0.3966 21 7 4.2896 5.4091 -1.0830 22 6 2.1657 4.3771 -0.5745 23 6 2.5317 3.2612 -1.5174 24 1 -0.3633 0.8550 0.5702 25 1 -0.3633 0.0663 -1.0255 26 1 -0.3633 -0.9213 0.4554 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.7231 0.2630 3.1528 30 1 0.0644 3.0634 -2.1868 31 1 -0.3497 1.5655 -1.3154 32 1 -1.0448 3.7054 -0.1302 33 1 -0.0028 2.6304 0.8291 34 1 -0.2692 5.4532 1.4910 35 1 1.3299 7.2926 1.8047 36 1 3.4771 7.2758 0.5965 37 1 4.5013 4.6768 -1.6829 38 1 4.9226 6.1336 -0.9598 39 1 3.5773 2.9920 -1.3677 40 1 2.3904 3.5978 -2.5445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230054017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:40 Heat of formation + Delta-G solvation = 41.939720 kcal Electronic energy + Delta-G solvation = -20781.395037 eV Core-core repulsion = 17981.996192 eV Total energy + Delta-G solvation = -2799.398845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93370 -37.22146 -34.41230 -33.23837 -31.71201 -30.71434 -29.36369 -27.89459 -26.50919 -24.30705 -22.95807 -21.99208 -20.93363 -20.41706 -18.25042 -16.76720 -16.38920 -16.03595 -15.23147 -14.72440 -14.35752 -14.14555 -13.84261 -13.37866 -13.10641 -12.94010 -12.61244 -12.21572 -11.89698 -11.74371 -11.41727 -11.35799 -11.08730 -10.96544 -10.79324 -10.59514 -10.47436 -10.20413 -9.93502 -9.81201 -9.57922 -9.20392 -8.61206 -8.36931 -7.89537 -7.09610 -6.92016 -5.99476 -4.01728 2.02533 2.20522 3.29273 3.37294 3.38690 4.33542 4.42606 4.44105 5.11315 5.30562 5.34185 5.46228 5.60960 5.79249 5.84323 5.93330 6.04855 6.08556 6.20182 6.27090 6.36384 6.43141 6.45182 6.54348 6.56925 6.63657 6.74457 6.90094 7.01624 7.08697 7.21329 7.32304 7.41106 7.45670 7.60216 7.78865 7.89930 8.00827 8.16965 8.22086 8.36152 8.65092 9.04479 9.62102 11.08753 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015251 B = 0.010665 C = 0.007711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.463871 B = 2624.848039 C = 3630.355539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C 0.208 3.792 4 H 0.024 0.976 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.522 5.522 14 C 0.035 3.965 15 C -0.120 4.120 16 C -0.025 4.025 17 C -0.182 4.182 18 C -0.084 4.084 19 C -0.212 4.212 20 C 0.221 3.779 21 N -0.878 5.878 22 C -0.150 4.150 23 C 0.096 3.904 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.259 0.741 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.398 0.602 38 H 0.391 0.609 39 H 0.102 0.898 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 7.797 -5.058 9.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C 0.102 3.898 4 H 0.041 0.959 5 C -0.545 4.545 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.244 5.244 14 C -0.094 4.094 15 C -0.158 4.158 16 C -0.026 4.026 17 C -0.202 4.202 18 C -0.103 4.103 19 C -0.235 4.235 20 C 0.117 3.883 21 N -0.417 5.417 22 C -0.156 4.156 23 C -0.032 4.032 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.227 0.773 38 H 0.218 0.782 39 H 0.119 0.881 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.442 7.331 -5.248 9.651 hybrid contribution 1.270 0.691 0.988 1.751 sum -2.173 8.022 -4.260 9.340 Atomic orbital electron populations 1.22199 0.99701 0.99736 0.99314 1.21511 0.91469 0.99827 1.01634 1.19441 0.95282 0.90501 0.84611 0.95855 1.21263 0.91250 1.42283 0.99681 0.91951 1.24879 0.97582 0.95406 0.95944 1.69923 1.34343 1.43291 1.05133 0.86597 0.86244 0.77522 0.77955 1.19907 1.21296 1.21123 1.62743 1.01005 1.22881 1.37745 1.22604 0.92552 0.98924 0.95313 1.21275 0.96455 0.96135 1.01934 1.19374 0.94039 0.94556 0.94619 1.20727 1.00503 0.96144 1.02794 1.20594 0.93624 0.97852 0.98240 1.20342 0.99429 1.00034 1.03738 1.17655 0.85999 0.93360 0.91334 1.42463 1.18295 1.28894 1.52077 1.19889 0.94414 0.97483 1.03813 1.21032 1.00699 0.87021 0.94459 0.93428 0.93655 0.95077 0.94123 0.89931 0.93151 0.92624 0.89179 0.91719 0.89339 0.87367 0.87137 0.87251 0.77263 0.78193 0.88075 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.32 37.16 0.31 -2.65 16 2 C -0.11 -2.48 5.49 -26.73 -0.15 -2.62 16 3 C 0.21 5.02 1.14 -68.87 -0.08 4.94 16 4 H 0.02 0.64 5.00 -51.93 -0.26 0.38 16 5 C -0.51 -13.41 7.66 -34.44 -0.26 -13.68 16 6 H 0.06 1.64 5.56 -52.48 -0.29 1.34 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.23 11.75 55.43 0.65 -24.58 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.52 -10.98 4.87 -229.60 -1.12 -12.10 16 14 C 0.03 0.63 5.35 -3.74 -0.02 0.61 16 15 C -0.12 -2.18 4.87 -27.71 -0.13 -2.31 16 16 C -0.02 -0.48 5.25 -104.40 -0.55 -1.03 16 17 C -0.18 -3.24 9.65 -39.45 -0.38 -3.63 16 18 C -0.08 -1.40 10.04 -39.68 -0.40 -1.80 16 19 C -0.21 -3.58 9.89 -39.45 -0.39 -3.97 16 20 C 0.22 3.99 6.73 -83.68 -0.56 3.43 16 21 N -0.88 -13.07 8.97 32.47 0.29 -12.77 16 22 C -0.15 -2.97 5.45 -104.43 -0.57 -3.54 16 23 C 0.10 1.91 4.36 -5.17 -0.02 1.89 16 24 H 0.05 0.91 5.24 -51.93 -0.27 0.64 16 25 H 0.04 0.79 6.22 -51.93 -0.32 0.47 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 2.17 6.42 -51.93 -0.33 1.84 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 31 H 0.09 1.56 4.22 -51.93 -0.22 1.34 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.79 4.85 -51.93 -0.25 1.54 16 34 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.40 5.77 6.94 -40.82 -0.28 5.49 16 38 H 0.39 4.72 8.84 -40.82 -0.36 4.36 16 39 H 0.10 2.14 4.05 -51.93 -0.21 1.93 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -29.18 296.38 -9.35 -38.52 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.32 Total: 12.89 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.30 Total: -22.72 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.18 Total: -49.46 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.18 -9.35 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230054017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.464 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds