Wall clock time and date at job start Mon Mar 30 2020 07:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46858 * 2 1 4 4 H 1.09004 * 109.47504 * 53.16418 * 3 2 1 5 5 C 1.50703 * 109.46863 * 173.15765 * 3 2 1 6 6 H 1.08008 * 119.99759 * 114.16865 * 5 3 2 7 7 C 1.37873 * 120.00069 * 294.17098 * 5 3 2 8 8 N 1.31512 * 120.00494 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99915 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46906 * 119.99863 * 9 7 5 12 12 H 1.48500 * 109.46934 * 240.00166 * 9 7 5 13 13 N 1.46900 * 109.47305 * 293.15555 * 3 2 1 14 14 C 1.47163 * 110.99574 * 76.91013 * 13 3 2 15 15 C 1.52887 * 108.66906 * 52.09945 * 14 13 3 16 16 C 1.51177 * 109.73215 * 50.33327 * 15 14 13 17 17 C 1.38748 * 118.37678 * 163.32696 * 16 15 14 18 18 C 1.38083 * 120.50301 * 179.66897 * 17 16 15 19 19 C 1.38126 * 119.91276 * 0.02562 * 18 17 16 20 20 C 1.38696 * 119.78414 * 0.09185 * 19 18 17 21 21 N 1.39672 * 119.88904 * 179.97438 * 20 19 18 22 22 C 1.37694 * 121.72246 * 343.18153 * 16 15 14 23 23 C 1.46634 * 110.99959 * 199.88520 * 13 3 2 24 24 H 1.09007 * 109.46738 * 326.30041 * 1 2 3 25 25 H 1.08998 * 109.47006 * 86.30235 * 1 2 3 26 26 H 1.09002 * 109.46921 * 206.30463 * 1 2 3 27 27 H 1.08993 * 109.46746 * 240.00108 * 2 1 3 28 28 H 1.09001 * 109.46844 * 120.00161 * 2 1 3 29 29 H 0.96993 * 120.00655 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.63407 * 171.90109 * 14 13 3 31 31 H 1.09005 * 109.63234 * 292.29363 * 14 13 3 32 32 H 1.08999 * 109.39441 * 170.66743 * 15 14 13 33 33 H 1.09005 * 109.39029 * 290.36398 * 15 14 13 34 34 H 1.07993 * 119.74847 * 359.64083 * 17 16 15 35 35 H 1.08006 * 120.03839 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.10775 * 180.02562 * 19 18 17 37 37 H 0.96996 * 119.99820 * 180.02562 * 21 20 19 38 38 H 0.96998 * 120.00079 * 0.02562 * 21 20 19 39 39 H 1.08997 * 109.26752 * 49.34251 * 23 13 3 40 40 H 1.09004 * 109.26333 * 168.85080 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 1.9905 0.8225 5 6 3.5375 1.4459 0.1693 6 1 4.1708 1.7959 -0.6326 7 6 4.0990 1.0021 1.3477 8 7 3.3280 0.5755 2.3239 9 14 5.9553 1.0057 1.5572 10 1 6.5919 1.5290 0.3218 11 1 6.3220 1.8709 2.7071 12 1 6.4276 -0.3794 1.8094 13 7 1.6897 2.0857 -1.2734 14 6 0.2677 2.4637 -1.2996 15 6 -0.0449 3.2800 -0.0453 16 6 0.9691 4.3910 0.1065 17 6 0.6716 5.4431 0.9608 18 6 1.5690 6.4775 1.1376 19 6 2.7727 6.4685 0.4602 20 6 3.0733 5.4201 -0.3966 21 7 4.2896 5.4091 -1.0830 22 6 2.1657 4.3771 -0.5745 23 6 2.5317 3.2612 -1.5174 24 1 -0.3633 0.8550 0.5702 25 1 -0.3633 0.0663 -1.0255 26 1 -0.3633 -0.9213 0.4554 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.7231 0.2630 3.1528 30 1 0.0644 3.0634 -2.1868 31 1 -0.3497 1.5655 -1.3154 32 1 -1.0448 3.7054 -0.1302 33 1 -0.0028 2.6304 0.8291 34 1 -0.2692 5.4532 1.4910 35 1 1.3299 7.2926 1.8047 36 1 3.4771 7.2758 0.5965 37 1 4.5013 4.6768 -1.6829 38 1 4.9226 6.1336 -0.9598 39 1 3.5773 2.9920 -1.3677 40 1 2.3904 3.5978 -2.5445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230054017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:39 Heat of formation + Delta-G solvation = 23.295628 kcal Electronic energy + Delta-G solvation = -20782.203506 eV Core-core repulsion = 17981.996192 eV Total energy + Delta-G solvation = -2800.207313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38484 -38.72865 -35.77749 -35.01487 -33.50732 -32.20306 -30.84170 -29.41234 -28.14975 -26.02557 -24.54132 -23.52723 -22.31022 -22.08175 -19.89453 -18.41099 -17.96201 -17.34193 -16.94208 -16.19601 -16.09139 -15.72470 -15.39144 -14.87008 -14.51475 -14.35295 -14.31499 -13.84402 -13.49254 -13.31073 -13.12651 -12.86211 -12.78366 -12.63609 -12.40415 -12.27446 -12.00281 -11.88417 -11.59217 -11.40253 -11.18133 -10.95575 -10.46304 -10.37931 -9.29751 -8.76065 -8.22133 -8.06841 -6.13340 0.65881 0.85163 1.37116 1.39606 1.48539 2.43237 3.04555 3.16500 3.24984 3.54235 3.93798 4.14721 4.25477 4.39302 4.47898 4.52161 4.61376 4.65877 4.67294 4.73803 4.85065 4.91693 5.02983 5.08743 5.11619 5.14448 5.27494 5.36510 5.46797 5.53795 5.59733 5.71120 5.76978 5.78387 5.96195 6.00306 6.16126 6.33628 6.48567 6.71917 6.86211 7.04608 7.09967 7.53770 9.00809 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015251 B = 0.010665 C = 0.007711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.463871 B = 2624.848039 C = 3630.355539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C 0.219 3.781 4 H -0.006 1.006 5 C -0.511 4.511 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.918 5.918 9 Si 0.944 3.056 10 H -0.264 1.264 11 H -0.291 1.291 12 H -0.284 1.284 13 N -0.529 5.529 14 C 0.035 3.965 15 C -0.113 4.113 16 C -0.048 4.048 17 C -0.198 4.198 18 C -0.084 4.084 19 C -0.220 4.220 20 C 0.209 3.791 21 N -0.869 5.869 22 C -0.180 4.180 23 C 0.101 3.899 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.256 0.744 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.399 0.601 38 H 0.405 0.595 39 H 0.083 0.917 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 9.142 -5.800 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.550 4.550 6 H 0.080 0.920 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.771 3.229 10 H -0.188 1.188 11 H -0.217 1.217 12 H -0.210 1.210 13 N -0.251 5.251 14 C -0.093 4.093 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.218 4.218 18 C -0.103 4.103 19 C -0.243 4.243 20 C 0.103 3.897 21 N -0.409 5.409 22 C -0.186 4.186 23 C -0.027 4.027 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.229 0.771 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.580 8.693 -6.019 11.163 hybrid contribution 1.315 0.337 1.192 1.806 sum -2.266 9.030 -4.827 10.487 Atomic orbital electron populations 1.22064 0.96531 1.00346 1.00907 1.21371 0.94384 0.98944 0.99532 1.19138 0.93775 0.90693 0.85164 0.98805 1.21628 0.92840 1.41080 0.99431 0.92038 1.25565 1.01249 0.95587 0.95983 1.70054 1.35755 1.44562 1.05467 0.85722 0.82001 0.77299 0.77916 1.18755 1.21713 1.21024 1.62678 1.02898 1.23891 1.35589 1.22678 0.90829 0.99646 0.96117 1.21199 0.97763 0.95590 1.00593 1.19664 0.94460 0.95438 0.95360 1.21008 1.01667 0.96265 1.02887 1.21009 0.93125 0.98151 0.97979 1.20718 1.00108 1.00334 1.03136 1.17879 0.86613 0.93389 0.91773 1.42431 1.17706 1.29361 1.51439 1.19986 0.95406 0.98230 1.04968 1.20931 0.99348 0.86862 0.95564 0.93515 0.91370 0.93926 0.94776 0.93334 0.93486 0.90878 0.88307 0.89067 0.91947 0.85865 0.84115 0.84666 0.77134 0.76566 0.89949 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.32 71.98 0.60 -4.78 16 2 C -0.10 -4.91 5.49 30.60 0.17 -4.74 16 3 C 0.22 10.73 1.14 44.17 0.05 10.78 16 4 H -0.01 -0.31 5.00 -2.39 -0.01 -0.32 16 5 C -0.51 -27.45 7.66 25.60 0.20 -27.25 16 6 H 0.06 3.25 5.56 -2.91 -0.02 3.24 16 7 C 0.01 0.81 5.29 84.65 0.45 1.25 16 8 N -0.92 -53.51 11.75 21.45 0.25 -53.26 16 9 Si 0.94 44.16 29.54 68.60 2.03 46.19 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.53 -22.00 4.87 -880.33 -4.29 -26.29 16 14 C 0.04 1.23 5.35 86.22 0.46 1.69 16 15 C -0.11 -4.02 4.87 29.96 0.15 -3.88 16 16 C -0.05 -1.84 5.25 -19.72 -0.10 -1.95 16 17 C -0.20 -6.80 9.65 22.35 0.22 -6.59 16 18 C -0.08 -2.61 10.04 22.21 0.22 -2.38 16 19 C -0.22 -6.93 9.89 22.35 0.22 -6.71 16 20 C 0.21 7.28 6.73 38.28 0.26 7.54 16 21 N -0.87 -24.60 8.97 -51.20 -0.46 -25.06 16 22 C -0.18 -6.99 5.45 -19.74 -0.11 -7.10 16 23 C 0.10 3.97 4.36 85.58 0.37 4.34 16 24 H 0.05 1.78 5.24 -2.38 -0.01 1.76 16 25 H 0.07 2.26 6.22 -2.39 -0.01 2.24 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 2.62 6.42 -2.39 -0.02 2.61 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 31 H 0.10 3.23 4.22 -2.38 -0.01 3.22 16 32 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.06 2.55 4.85 -2.38 -0.01 2.54 16 34 H 0.12 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.40 11.17 6.94 -92.71 -0.64 10.53 16 38 H 0.40 8.96 8.84 -92.71 -0.82 8.15 16 39 H 0.08 3.49 4.05 -2.39 -0.01 3.48 16 40 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -62.98 296.38 0.30 -62.68 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.38 Total: 35.51 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 3.15 Total: -39.78 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.49 Total: -104.61 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -62.98 0.30 -62.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230054017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.979 kcal (2) G-P(sol) polarization free energy of solvation -62.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds