Wall clock time and date at job start Mon Mar 30 2020 07:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47508 * 2 1 4 4 N 1.46506 * 109.46879 * 120.00182 * 2 1 3 5 5 C 1.39855 * 119.99760 * 305.88294 * 4 2 1 6 6 C 1.39600 * 119.83944 * 172.12376 * 5 4 2 7 7 C 1.38051 * 120.54961 * 179.97438 * 6 5 4 8 8 C 1.38740 * 120.22185 * 359.78846 * 7 6 5 9 9 N 1.38859 * 120.16392 * 180.25609 * 8 7 6 10 10 C 1.41565 * 119.67069 * 0.48790 * 8 7 6 11 11 C 1.41021 * 120.26378 * 179.76830 * 10 8 7 12 12 H 1.08000 * 120.00340 * 328.95389 * 11 10 8 13 13 C 1.39887 * 119.99753 * 149.23073 * 11 10 8 14 14 N 1.30897 * 120.00184 * 346.82044 * 13 11 10 15 15 Si 1.86801 * 119.99916 * 166.82123 * 13 11 10 16 16 H 1.48503 * 109.47233 * 90.00247 * 15 13 11 17 17 H 1.48500 * 109.47408 * 209.99994 * 15 13 11 18 18 H 1.48501 * 109.47470 * 330.00087 * 15 13 11 19 19 C 1.38005 * 119.84124 * 352.15209 * 5 4 2 20 20 C 1.53004 * 109.47129 * 239.99671 * 2 1 3 21 21 C 1.53002 * 117.49856 * 123.74992 * 20 2 1 22 22 C 1.52995 * 117.49727 * 55.08618 * 20 2 1 23 23 H 1.08997 * 109.47052 * 297.45352 * 1 2 3 24 24 H 1.08999 * 109.47211 * 57.45089 * 1 2 3 25 25 H 1.08998 * 109.47359 * 177.45321 * 1 2 3 26 26 H 1.09004 * 109.47467 * 192.85030 * 3 2 1 27 27 H 1.09005 * 109.47030 * 312.84624 * 3 2 1 28 28 H 1.08995 * 109.47333 * 72.84475 * 3 2 1 29 29 H 0.96996 * 120.00118 * 125.89013 * 4 2 1 30 30 H 1.08004 * 119.72382 * 0.02562 * 6 5 4 31 31 H 1.08004 * 119.88606 * 180.02562 * 7 6 5 32 32 H 0.97001 * 119.99809 * 174.25233 * 9 8 7 33 33 H 0.96999 * 120.00366 * 354.25101 * 9 8 7 34 34 H 0.96998 * 119.99937 * 185.05285 * 14 13 11 35 35 H 1.08004 * 120.11603 * 359.97377 * 19 5 4 36 36 H 1.09004 * 115.55044 * 269.42160 * 20 2 1 37 37 H 1.08996 * 117.49671 * 359.97438 * 21 20 2 38 38 H 1.08994 * 117.49812 * 145.02516 * 21 20 2 39 39 H 1.08998 * 117.50422 * 214.97824 * 22 20 2 40 40 H 1.09006 * 117.49912 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5820 -0.2888 2.4627 6 6 1.9162 -1.0478 3.5857 7 6 1.4938 -0.6643 4.8429 8 6 0.7341 0.4853 5.0038 9 7 0.3143 0.8728 6.2695 10 6 0.3848 1.2588 3.8708 11 6 -0.3911 2.4270 4.0194 12 1 -1.1190 2.4943 4.8144 13 6 -0.2220 3.4963 3.1335 14 7 0.8159 3.5282 2.3366 15 14 -1.4774 4.8788 3.0879 16 1 -1.0826 5.9381 4.0509 17 1 -1.5342 5.4510 1.7187 18 1 -2.8136 4.3467 3.4577 19 6 0.8227 0.8558 2.5963 20 6 2.0400 -0.7213 -1.2492 21 6 2.9864 0.0485 -2.1727 22 6 1.5432 -0.2201 -2.6067 23 1 -0.3633 0.4738 0.9119 24 1 -0.3633 0.5529 -0.8662 25 1 -0.3634 -1.0266 -0.0457 26 1 3.1058 1.4510 -0.2286 27 1 1.5023 2.0179 -0.7535 28 1 1.8754 1.8860 0.9819 29 1 2.6442 -1.4266 1.1098 30 1 2.5109 -1.9419 3.4701 31 1 1.7589 -1.2593 5.7044 32 1 -0.1445 1.7188 6.3904 33 1 0.4799 0.2974 7.0327 34 1 0.9726 4.3035 1.7751 35 1 0.5660 1.4405 1.7252 36 1 2.2061 -1.7929 -1.1385 37 1 3.2453 1.0690 -1.8904 38 1 3.7747 -0.5166 -2.6697 39 1 1.3828 -0.9618 -3.3892 40 1 0.8533 0.6238 -2.6098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232536128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:13 Heat of formation + Delta-G solvation = 61.802501 kcal Electronic energy + Delta-G solvation = -20158.134463 eV Core-core repulsion = 17359.596933 eV Total energy + Delta-G solvation = -2798.537530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.15502 -37.45127 -34.90134 -33.47263 -32.11954 -29.85730 -29.07659 -26.69710 -26.54331 -24.67838 -22.79112 -22.01220 -21.13158 -19.70665 -18.34319 -17.33088 -16.21498 -15.65779 -15.20936 -15.08642 -14.59019 -14.05577 -13.89522 -13.02242 -12.70722 -12.63660 -12.27879 -12.18233 -11.67345 -11.51105 -11.44958 -11.28385 -11.03047 -10.99602 -10.83580 -10.59050 -10.36511 -10.34599 -10.11856 -9.86937 -9.53450 -9.44897 -9.07113 -8.90110 -7.66626 -7.12027 -6.55079 -5.47716 -4.06215 2.92762 3.14725 3.18823 3.31373 3.50251 3.95908 4.05718 4.47635 4.83965 4.98281 5.17110 5.27810 5.46004 5.55266 5.73296 5.78185 5.86748 5.99937 6.05919 6.20074 6.33189 6.40391 6.42088 6.53160 6.59136 6.64758 6.70202 7.02192 7.15319 7.23077 7.40231 7.41656 7.50492 7.81538 7.93053 8.02294 8.25180 8.50967 8.76006 8.90101 8.99141 9.12921 9.28739 9.37468 10.42850 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.008235 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.370224 B = 3399.225336 C = 4717.776265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.223 3.777 3 C -0.192 4.192 4 N -0.754 5.754 5 C 0.178 3.822 6 C -0.252 4.252 7 C -0.153 4.153 8 C 0.086 3.914 9 N -0.889 5.889 10 C 0.091 3.909 11 C -0.466 4.466 12 H 0.070 0.930 13 C 0.077 3.923 14 N -0.808 5.808 15 Si 0.900 3.100 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.210 4.210 20 C -0.149 4.149 21 C -0.186 4.186 22 C -0.174 4.174 23 H 0.091 0.909 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.124 0.876 29 H 0.380 0.620 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.389 0.611 33 H 0.373 0.627 34 H 0.274 0.726 35 H 0.145 0.855 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -3.695 -5.751 6.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.135 3.865 3 C -0.249 4.249 4 N -0.387 5.387 5 C 0.080 3.920 6 C -0.276 4.276 7 C -0.178 4.178 8 C -0.015 4.015 9 N -0.431 5.431 10 C 0.085 3.915 11 C -0.498 4.498 12 H 0.088 0.912 13 C -0.138 4.138 14 N -0.435 5.435 15 Si 0.726 3.274 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.234 4.234 20 C -0.168 4.168 21 C -0.223 4.223 22 C -0.212 4.212 23 H 0.110 0.890 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.142 0.858 29 H 0.213 0.787 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.217 0.783 33 H 0.198 0.802 34 H 0.085 0.915 35 H 0.162 0.838 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.026 -3.451 -6.172 7.145 hybrid contribution -0.230 0.412 0.192 0.510 sum 0.796 -3.039 -5.980 6.755 Atomic orbital electron populations 1.22511 0.95562 1.01469 1.03472 1.19314 0.92919 0.91482 0.82744 1.22880 0.99477 0.96038 1.06537 1.44415 1.52727 1.39274 1.02323 1.17504 0.96838 0.94280 0.83417 1.19593 1.13355 1.02727 0.91936 1.19693 1.04396 0.98076 0.95593 1.17925 1.00759 0.97183 0.85645 1.41805 1.70584 1.24926 1.05822 1.17070 0.93001 0.92150 0.89233 1.19111 1.19358 0.99122 1.12185 0.91206 1.25695 0.95075 0.99160 0.93843 1.69742 1.24268 1.28841 1.20674 0.86450 0.81985 0.80952 0.78062 1.19966 1.20418 1.18903 1.21134 1.07304 0.96706 0.98244 1.22509 1.03990 0.98906 0.91359 1.23210 0.92869 1.02498 1.03694 1.22902 0.97595 1.03416 0.97251 0.89015 0.93290 0.93440 0.93517 0.93802 0.85821 0.78744 0.89972 0.89835 0.78320 0.80206 0.91505 0.83801 0.88224 0.87680 0.89567 0.89334 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 7.92 37.16 0.29 -2.89 16 2 C 0.22 3.96 0.92 -131.82 -0.12 3.84 16 3 C -0.19 -3.65 7.04 37.15 0.26 -3.39 16 4 N -0.75 -14.66 5.25 -45.99 -0.24 -14.90 16 5 C 0.18 4.11 6.22 -83.77 -0.52 3.59 16 6 C -0.25 -5.75 9.89 -39.14 -0.39 -6.14 16 7 C -0.15 -3.53 9.87 -39.46 -0.39 -3.92 16 8 C 0.09 2.08 6.79 -83.23 -0.56 1.51 16 9 N -0.89 -18.24 8.97 32.75 0.29 -17.94 16 10 C 0.09 2.37 5.53 -106.66 -0.59 1.78 16 11 C -0.47 -12.02 8.32 -37.91 -0.32 -12.34 16 12 H 0.07 1.74 6.96 -52.49 -0.37 1.37 16 13 C 0.08 1.90 5.19 -17.33 -0.09 1.81 16 14 N -0.81 -20.27 9.97 55.54 0.55 -19.72 16 15 Si 0.90 18.77 29.58 -169.99 -5.03 13.74 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 19 C -0.21 -5.26 5.22 -38.75 -0.20 -5.46 16 20 C -0.15 -2.17 5.32 -90.62 -0.48 -2.65 16 21 C -0.19 -2.42 9.50 -26.69 -0.25 -2.67 16 22 C -0.17 -2.21 9.59 -26.69 -0.26 -2.47 16 23 H 0.09 1.99 4.60 -51.93 -0.24 1.75 16 24 H 0.05 0.81 7.08 -51.93 -0.37 0.44 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.84 6.28 -51.93 -0.33 0.51 16 27 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.12 2.80 3.70 -51.93 -0.19 2.61 16 29 H 0.38 6.67 8.46 -40.82 -0.35 6.33 16 30 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.39 7.84 7.21 -40.82 -0.29 7.54 16 33 H 0.37 6.50 8.84 -40.82 -0.36 6.14 16 34 H 0.27 6.41 8.30 -40.82 -0.34 6.07 16 35 H 0.14 3.57 2.22 -52.48 -0.12 3.45 16 36 H 0.10 1.37 8.08 -51.93 -0.42 0.96 16 37 H 0.11 1.45 5.72 -51.93 -0.30 1.15 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.25 7.32 -51.93 -0.38 0.86 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -26.90 305.79 -8.80 -35.71 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -5.37 Total: 27.90 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -3.62 Total: -29.39 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.61 Total: -52.56 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.90 -8.80 -35.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232536128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.509 kcal (2) G-P(sol) polarization free energy of solvation -26.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds