Wall clock time and date at job start Mon Mar 30 2020 07:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47508 * 2 1 4 4 N 1.46506 * 109.46879 * 120.00182 * 2 1 3 5 5 C 1.39855 * 119.99760 * 305.88294 * 4 2 1 6 6 C 1.39600 * 119.83944 * 172.12376 * 5 4 2 7 7 C 1.38051 * 120.54961 * 179.97438 * 6 5 4 8 8 C 1.38740 * 120.22185 * 359.78846 * 7 6 5 9 9 N 1.38859 * 120.16392 * 180.25609 * 8 7 6 10 10 C 1.41565 * 119.67069 * 0.48790 * 8 7 6 11 11 C 1.41021 * 120.26378 * 179.76830 * 10 8 7 12 12 H 1.08000 * 120.00340 * 328.95389 * 11 10 8 13 13 C 1.39887 * 119.99753 * 149.23073 * 11 10 8 14 14 N 1.30897 * 120.00184 * 346.82044 * 13 11 10 15 15 Si 1.86801 * 119.99916 * 166.82123 * 13 11 10 16 16 H 1.48503 * 109.47233 * 90.00247 * 15 13 11 17 17 H 1.48500 * 109.47408 * 209.99994 * 15 13 11 18 18 H 1.48501 * 109.47470 * 330.00087 * 15 13 11 19 19 C 1.38005 * 119.84124 * 352.15209 * 5 4 2 20 20 C 1.53004 * 109.47129 * 239.99671 * 2 1 3 21 21 C 1.53002 * 117.49856 * 123.74992 * 20 2 1 22 22 C 1.52995 * 117.49727 * 55.08618 * 20 2 1 23 23 H 1.08997 * 109.47052 * 297.45352 * 1 2 3 24 24 H 1.08999 * 109.47211 * 57.45089 * 1 2 3 25 25 H 1.08998 * 109.47359 * 177.45321 * 1 2 3 26 26 H 1.09004 * 109.47467 * 192.85030 * 3 2 1 27 27 H 1.09005 * 109.47030 * 312.84624 * 3 2 1 28 28 H 1.08995 * 109.47333 * 72.84475 * 3 2 1 29 29 H 0.96996 * 120.00118 * 125.89013 * 4 2 1 30 30 H 1.08004 * 119.72382 * 0.02562 * 6 5 4 31 31 H 1.08004 * 119.88606 * 180.02562 * 7 6 5 32 32 H 0.97001 * 119.99809 * 174.25233 * 9 8 7 33 33 H 0.96999 * 120.00366 * 354.25101 * 9 8 7 34 34 H 0.96998 * 119.99937 * 185.05285 * 14 13 11 35 35 H 1.08004 * 120.11603 * 359.97377 * 19 5 4 36 36 H 1.09004 * 115.55044 * 269.42160 * 20 2 1 37 37 H 1.08996 * 117.49671 * 359.97438 * 21 20 2 38 38 H 1.08994 * 117.49812 * 145.02516 * 21 20 2 39 39 H 1.08998 * 117.50422 * 214.97824 * 22 20 2 40 40 H 1.09006 * 117.49912 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5820 -0.2888 2.4627 6 6 1.9162 -1.0478 3.5857 7 6 1.4938 -0.6643 4.8429 8 6 0.7341 0.4853 5.0038 9 7 0.3143 0.8728 6.2695 10 6 0.3848 1.2588 3.8708 11 6 -0.3911 2.4270 4.0194 12 1 -1.1190 2.4943 4.8144 13 6 -0.2220 3.4963 3.1335 14 7 0.8159 3.5282 2.3366 15 14 -1.4774 4.8788 3.0879 16 1 -1.0826 5.9381 4.0509 17 1 -1.5342 5.4510 1.7187 18 1 -2.8136 4.3467 3.4577 19 6 0.8227 0.8558 2.5963 20 6 2.0400 -0.7213 -1.2492 21 6 2.9864 0.0485 -2.1727 22 6 1.5432 -0.2201 -2.6067 23 1 -0.3633 0.4738 0.9119 24 1 -0.3633 0.5529 -0.8662 25 1 -0.3634 -1.0266 -0.0457 26 1 3.1058 1.4510 -0.2286 27 1 1.5023 2.0179 -0.7535 28 1 1.8754 1.8860 0.9819 29 1 2.6442 -1.4266 1.1098 30 1 2.5109 -1.9419 3.4701 31 1 1.7589 -1.2593 5.7044 32 1 -0.1445 1.7188 6.3904 33 1 0.4799 0.2974 7.0327 34 1 0.9726 4.3035 1.7751 35 1 0.5660 1.4405 1.7252 36 1 2.2061 -1.7929 -1.1385 37 1 3.2453 1.0690 -1.8904 38 1 3.7747 -0.5166 -2.6697 39 1 1.3828 -0.9618 -3.3892 40 1 0.8533 0.6238 -2.6098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232536128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:13 Heat of formation + Delta-G solvation = 46.701147 kcal Electronic energy + Delta-G solvation = -20158.789307 eV Core-core repulsion = 17359.596933 eV Total energy + Delta-G solvation = -2799.192374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62073 -39.02855 -36.38682 -35.30467 -33.69982 -31.57460 -30.78781 -28.31801 -28.15024 -26.48728 -24.12043 -23.03877 -22.92827 -21.43300 -19.74687 -19.10361 -17.68989 -17.42283 -16.79139 -16.66673 -16.24730 -15.47610 -15.26415 -14.55400 -14.36179 -14.16269 -14.00628 -13.83762 -13.28398 -13.07539 -13.05110 -12.89740 -12.67899 -12.49867 -12.33970 -12.11341 -11.94723 -11.83162 -11.33661 -11.28516 -11.16798 -10.89909 -10.80873 -10.60657 -9.31787 -8.98296 -8.38395 -7.21524 -5.95552 1.17514 1.43816 1.52503 1.56174 1.69331 2.31089 2.78329 2.98728 3.12496 3.80721 3.82385 4.00267 4.10568 4.18312 4.31294 4.35772 4.60727 4.66168 4.78206 4.87707 4.89423 4.94364 5.04296 5.12013 5.14265 5.27090 5.32860 5.33673 5.45475 5.49580 5.61523 5.68711 5.87054 6.01367 6.17508 6.21992 6.46327 6.66406 7.02621 7.13137 7.16019 7.46742 7.55265 7.70683 8.60029 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.008235 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.370224 B = 3399.225336 C = 4717.776265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.223 3.777 3 C -0.187 4.187 4 N -0.747 5.747 5 C 0.170 3.830 6 C -0.258 4.258 7 C -0.163 4.163 8 C 0.068 3.932 9 N -0.880 5.880 10 C 0.051 3.949 11 C -0.493 4.493 12 H 0.068 0.932 13 C 0.038 3.962 14 N -0.829 5.829 15 Si 0.966 3.034 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.266 1.266 19 C -0.222 4.222 20 C -0.162 4.162 21 C -0.180 4.180 22 C -0.162 4.162 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.391 0.609 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.389 0.611 33 H 0.388 0.612 34 H 0.277 0.723 35 H 0.142 0.858 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 -4.391 -6.968 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.136 3.864 3 C -0.245 4.245 4 N -0.381 5.381 5 C 0.069 3.931 6 C -0.282 4.282 7 C -0.187 4.187 8 C -0.034 4.034 9 N -0.424 5.424 10 C 0.046 3.954 11 C -0.525 4.525 12 H 0.086 0.914 13 C -0.174 4.174 14 N -0.457 5.457 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.190 1.190 19 C -0.246 4.246 20 C -0.180 4.180 21 C -0.216 4.216 22 C -0.200 4.200 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.225 0.775 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.217 0.783 33 H 0.216 0.784 34 H 0.088 0.912 35 H 0.159 0.841 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.339 -4.169 -7.380 8.582 hybrid contribution -0.275 0.566 0.563 0.844 sum 1.064 -3.603 -6.817 7.784 Atomic orbital electron populations 1.22419 0.96323 1.01520 1.02222 1.19348 0.92356 0.91048 0.83650 1.22781 1.00071 0.96973 1.04682 1.44422 1.52537 1.39399 1.01692 1.17639 0.96488 0.93860 0.85075 1.19948 1.13114 1.03288 0.91882 1.20012 1.04008 0.97995 0.96677 1.18147 1.01187 0.97595 0.86462 1.41686 1.70154 1.25194 1.05326 1.17491 0.94271 0.93156 0.90457 1.19281 1.20073 0.99942 1.13162 0.91426 1.26388 0.96537 1.01157 0.93355 1.69835 1.25339 1.29520 1.21020 0.85444 0.79409 0.78091 0.78147 1.19426 1.19876 1.18998 1.21275 1.07812 0.97436 0.98073 1.22371 1.05912 0.99267 0.90455 1.23248 0.93678 1.01901 1.02791 1.22995 0.97183 1.03461 0.96330 0.92657 0.91787 0.92891 0.92864 0.93231 0.89195 0.77526 0.87768 0.87514 0.78265 0.78413 0.91231 0.84060 0.87031 0.88771 0.87408 0.86956 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.12 7.92 71.98 0.57 -5.55 16 2 C 0.22 7.73 0.92 3.60 0.00 7.73 16 3 C -0.19 -7.12 7.04 71.98 0.51 -6.62 16 4 N -0.75 -28.46 5.25 -299.42 -1.57 -30.03 16 5 C 0.17 7.85 6.22 38.13 0.24 8.09 16 6 C -0.26 -11.60 9.89 22.55 0.22 -11.38 16 7 C -0.16 -7.40 9.87 22.35 0.22 -7.18 16 8 C 0.07 3.33 6.79 38.97 0.26 3.59 16 9 N -0.88 -36.12 8.97 -50.31 -0.45 -36.57 16 10 C 0.05 2.76 5.53 -21.18 -0.12 2.64 16 11 C -0.49 -26.15 8.32 23.35 0.19 -25.96 16 12 H 0.07 3.47 6.96 -2.91 -0.02 3.45 16 13 C 0.04 1.91 5.19 85.23 0.44 2.35 16 14 N -0.83 -42.67 9.97 21.82 0.22 -42.45 16 15 Si 0.97 39.09 29.58 68.60 2.03 41.12 16 16 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 19 C -0.22 -11.40 5.22 22.81 0.12 -11.28 16 20 C -0.16 -4.30 5.32 -10.79 -0.06 -4.35 16 21 C -0.18 -4.16 9.50 30.62 0.29 -3.87 16 22 C -0.16 -3.63 9.59 30.62 0.29 -3.34 16 23 H 0.05 2.46 4.60 -2.39 -0.01 2.45 16 24 H 0.06 2.08 7.08 -2.39 -0.02 2.07 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.89 6.28 -2.38 -0.01 1.88 16 27 H 0.05 1.76 8.07 -2.38 -0.02 1.74 16 28 H 0.09 4.16 3.70 -2.39 -0.01 4.15 16 29 H 0.39 13.08 8.46 -92.71 -0.78 12.29 16 30 H 0.10 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 32 H 0.39 15.88 7.21 -92.71 -0.67 15.21 16 33 H 0.39 13.24 8.84 -92.71 -0.82 12.42 16 34 H 0.28 13.24 8.30 -92.71 -0.77 12.47 16 35 H 0.14 7.25 2.22 -2.91 -0.01 7.25 16 36 H 0.11 2.73 8.08 -2.39 -0.02 2.71 16 37 H 0.09 2.41 5.72 -2.39 -0.01 2.39 16 38 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.09 2.12 7.32 -2.38 -0.02 2.10 16 Total: -1.00 -58.43 305.79 2.24 -56.19 By element: Atomic # 1 Polarization: 68.04 SS G_CDS: -1.17 Total: 66.86 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 3.19 Total: -55.12 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -1.81 Total: -109.05 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -58.43 2.24 -56.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232536128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.894 kcal (2) G-P(sol) polarization free energy of solvation -58.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds