Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99731 * 2 1 4 4 C 1.53002 * 109.47085 * 124.99875 * 3 2 1 5 5 C 1.52992 * 109.47174 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47248 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47216 * 180.02562 * 6 5 4 8 8 O 1.42901 * 109.46850 * 179.97438 * 7 6 5 9 9 C 1.35671 * 116.99781 * 179.97438 * 8 7 6 10 10 C 1.39316 * 119.81769 * 0.25218 * 9 8 7 11 11 C 1.36441 * 120.18282 * 180.25688 * 10 9 8 12 12 C 1.40835 * 119.81132 * 359.46844 * 11 10 9 13 13 C 1.41216 * 120.17483 * 180.29815 * 12 11 10 14 14 H 1.07997 * 120.00438 * 24.54125 * 13 12 11 15 15 C 1.39897 * 119.99576 * 204.53835 * 13 12 11 16 16 N 1.30875 * 120.00270 * 17.93189 * 15 13 12 17 17 Si 1.86801 * 119.99742 * 197.93556 * 15 13 12 18 18 H 1.48504 * 109.47145 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47431 * 120.00060 * 17 15 13 20 20 H 1.48499 * 109.46661 * 240.00011 * 17 15 13 21 21 C 1.40823 * 119.64107 * 0.28458 * 12 11 10 22 22 C 1.36436 * 119.81465 * 359.97438 * 21 12 11 23 23 H 1.08001 * 120.00473 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.99740 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99764 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47279 * 5.00595 * 3 2 1 27 27 H 1.08993 * 109.47256 * 244.99856 * 3 2 1 28 28 H 1.09004 * 109.46615 * 59.99863 * 4 3 2 29 29 H 1.08997 * 109.47253 * 300.00563 * 4 3 2 30 30 H 1.09004 * 109.47302 * 60.00479 * 5 4 3 31 31 H 1.09006 * 109.47583 * 300.00278 * 5 4 3 32 32 H 1.08997 * 109.47243 * 60.00412 * 6 5 4 33 33 H 1.09004 * 109.47004 * 299.99688 * 6 5 4 34 34 H 1.08997 * 109.46763 * 60.00015 * 7 6 5 35 35 H 1.08994 * 109.46860 * 299.99949 * 7 6 5 36 36 H 1.07997 * 119.91004 * 0.03109 * 10 9 8 37 37 H 1.08001 * 120.09133 * 179.74824 * 11 10 9 38 38 H 0.97001 * 120.00621 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.09699 * 180.02562 * 21 12 11 40 40 H 1.08004 * 119.90886 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.8003 2.6579 1.1813 6 6 4.7723 2.6856 2.3626 7 6 5.5373 4.0107 2.3626 8 8 6.4446 4.0369 3.4663 9 6 7.2058 5.1505 3.6116 10 6 7.0748 6.2020 2.7071 11 6 7.8402 7.3233 2.8432 12 6 8.7566 7.4204 3.9082 13 6 9.5482 8.5800 4.0599 14 1 9.2121 9.5208 3.6496 15 6 10.7677 8.5100 4.7418 16 7 11.3464 7.3514 4.9307 17 14 11.5702 10.0703 5.3828 18 1 10.7211 11.2399 5.0415 19 1 11.7199 9.9802 6.8574 20 1 12.9079 10.2314 4.7584 21 6 8.8791 6.3551 4.8210 22 6 8.1100 5.2386 4.6677 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3585 2.1316 0.0897 27 1 2.6212 1.4027 -0.9313 28 1 3.7399 0.5066 1.0920 29 1 2.4772 1.2355 2.1130 30 1 3.0956 3.4847 1.2707 31 1 4.3582 2.7550 0.2499 32 1 5.4770 1.8590 2.2728 33 1 4.2148 2.5884 3.2942 34 1 4.8323 4.8372 2.4526 35 1 6.0947 4.1084 1.4311 36 1 6.3680 6.1279 1.8939 37 1 7.7404 8.1358 2.1388 38 1 12.1921 7.3029 5.4031 39 1 9.5792 6.4220 5.6406 40 1 8.2024 4.4209 5.3671 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232586105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = -31.697220 kcal Electronic energy + Delta-G solvation = -17865.584825 eV Core-core repulsion = 15030.700092 eV Total energy + Delta-G solvation = -2834.884733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.80700 -36.99593 -36.26277 -34.09048 -33.21716 -30.49700 -29.54046 -28.90852 -26.08942 -24.61742 -22.56802 -21.29074 -20.58883 -20.40592 -19.91014 -17.29542 -16.88241 -16.23657 -15.51258 -15.19307 -14.70985 -14.65678 -13.94351 -13.82352 -13.42524 -13.03992 -12.69282 -12.61344 -12.15422 -11.99275 -11.96693 -11.58501 -11.44521 -11.16722 -11.09008 -11.06018 -10.84379 -10.67861 -10.59042 -10.47922 -9.88737 -9.76847 -9.59544 -9.31377 -8.99714 -7.61409 -6.99951 -6.70070 -4.23062 1.99196 2.79110 2.97966 3.10015 3.15298 3.22517 3.96689 4.04397 4.57179 4.64028 4.72530 4.89107 4.99802 5.11251 5.17207 5.42347 5.50765 5.54939 5.59355 5.69399 5.73075 5.77531 5.82762 5.91638 6.04535 6.12720 6.23220 6.26739 6.31506 6.34880 6.48771 6.76775 7.01051 7.14175 7.21560 7.50239 7.58631 7.83046 8.03174 8.23161 8.49442 8.68767 8.92386 9.01838 10.24296 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.079474 B = 0.002558 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.231298 B =10942.944087 C =11167.943373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.097 4.097 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.068 3.932 8 O -0.331 6.331 9 C -0.006 4.006 10 C -0.168 4.168 11 C -0.198 4.198 12 C 0.086 3.914 13 C -0.463 4.463 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.799 5.799 17 Si 0.907 3.093 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.276 1.276 21 C -0.134 4.134 22 C -0.122 4.122 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.279 0.721 39 H 0.126 0.874 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.210 -9.538 -6.213 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.169 4.169 3 C -0.134 4.134 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.008 4.008 8 O -0.247 6.247 9 C -0.050 4.050 10 C -0.187 4.187 11 C -0.217 4.217 12 C 0.084 3.916 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.426 5.426 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.153 4.153 22 C -0.141 4.141 23 H 0.114 0.886 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.143 0.857 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.990 -9.796 -6.000 17.341 hybrid contribution 0.418 0.774 0.024 0.880 sum -12.572 -9.022 -5.977 16.588 Atomic orbital electron populations 1.23852 0.96024 1.01750 1.02076 1.23019 0.96049 0.98703 0.99112 1.20811 0.98304 0.95192 0.99121 1.21520 0.97712 0.97755 0.98122 1.21513 0.97918 0.97642 0.98386 1.21514 0.97902 0.97185 0.98897 1.22444 0.91542 0.97288 0.89565 1.85804 1.52093 1.39031 1.47746 1.18606 0.98769 0.87235 1.00344 1.20425 1.02839 0.95657 0.99767 1.20574 1.03247 0.97831 1.00092 1.17603 0.91177 0.93122 0.89689 1.19484 1.02489 0.95957 1.31412 0.90539 1.25881 0.96977 0.97363 0.94011 1.69842 1.15162 1.25872 1.31698 0.86293 0.79067 0.82354 0.79166 1.18495 1.19760 1.20108 1.20974 1.00142 0.93694 1.00487 1.19846 0.97771 0.99065 0.97379 0.88643 0.88688 0.87479 0.91496 0.90936 0.91720 0.91764 0.91753 0.91700 0.91225 0.91263 0.93376 0.93339 0.88809 0.88758 0.91008 0.85679 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 14.32 29.01 0.42 -1.03 16 2 C -0.15 -1.15 9.52 -36.03 -0.34 -1.50 16 3 C -0.10 -0.76 5.66 -27.88 -0.16 -0.92 16 4 C -0.11 -0.98 5.20 -26.73 -0.14 -1.11 16 5 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 6 C -0.12 -1.48 5.58 -26.73 -0.15 -1.63 16 7 C 0.07 1.10 4.73 37.16 0.18 1.28 16 8 O -0.33 -6.98 10.12 -18.71 -0.19 -7.17 16 9 C -0.01 -0.15 6.71 -38.78 -0.26 -0.41 16 10 C -0.17 -3.91 8.96 -39.83 -0.36 -4.26 16 11 C -0.20 -4.96 9.74 -39.25 -0.38 -5.34 16 12 C 0.09 2.35 5.57 -106.81 -0.60 1.75 16 13 C -0.46 -12.46 9.04 -37.83 -0.34 -12.80 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 15 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 16 N -0.80 -20.94 10.96 55.55 0.61 -20.33 16 17 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.13 -3.55 8.64 -39.25 -0.34 -3.89 16 22 C -0.12 -3.02 9.92 -39.83 -0.40 -3.42 16 23 H 0.10 0.65 7.84 -52.49 -0.41 0.24 16 24 H 0.09 0.59 8.06 -52.49 -0.42 0.16 16 25 H 0.11 0.75 8.06 -52.49 -0.42 0.32 16 26 H 0.07 0.51 7.79 -51.93 -0.40 0.11 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.76 7.64 -51.93 -0.40 0.37 16 35 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 36 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 37 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 38 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 39 H 0.13 3.39 6.16 -52.49 -0.32 3.06 16 40 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -28.36 334.73 -9.13 -37.48 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.46 Total: 3.92 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: -3.10 Total: -32.77 kcal Atomic # 7 Polarization: -20.94 SS G_CDS: 0.61 Total: -20.33 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.19 Total: -7.17 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.36 -9.13 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232586105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.786 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds