Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99731 * 2 1 4 4 C 1.53002 * 109.47085 * 124.99875 * 3 2 1 5 5 C 1.52992 * 109.47174 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47248 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47216 * 180.02562 * 6 5 4 8 8 O 1.42901 * 109.46850 * 179.97438 * 7 6 5 9 9 C 1.35671 * 116.99781 * 179.97438 * 8 7 6 10 10 C 1.39316 * 119.81769 * 0.25218 * 9 8 7 11 11 C 1.36441 * 120.18282 * 180.25688 * 10 9 8 12 12 C 1.40835 * 119.81132 * 359.46844 * 11 10 9 13 13 C 1.41216 * 120.17483 * 180.29815 * 12 11 10 14 14 H 1.07997 * 120.00438 * 24.54125 * 13 12 11 15 15 C 1.39897 * 119.99576 * 204.53835 * 13 12 11 16 16 N 1.30875 * 120.00270 * 17.93189 * 15 13 12 17 17 Si 1.86801 * 119.99742 * 197.93556 * 15 13 12 18 18 H 1.48504 * 109.47145 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47431 * 120.00060 * 17 15 13 20 20 H 1.48499 * 109.46661 * 240.00011 * 17 15 13 21 21 C 1.40823 * 119.64107 * 0.28458 * 12 11 10 22 22 C 1.36436 * 119.81465 * 359.97438 * 21 12 11 23 23 H 1.08001 * 120.00473 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.99740 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99764 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47279 * 5.00595 * 3 2 1 27 27 H 1.08993 * 109.47256 * 244.99856 * 3 2 1 28 28 H 1.09004 * 109.46615 * 59.99863 * 4 3 2 29 29 H 1.08997 * 109.47253 * 300.00563 * 4 3 2 30 30 H 1.09004 * 109.47302 * 60.00479 * 5 4 3 31 31 H 1.09006 * 109.47583 * 300.00278 * 5 4 3 32 32 H 1.08997 * 109.47243 * 60.00412 * 6 5 4 33 33 H 1.09004 * 109.47004 * 299.99688 * 6 5 4 34 34 H 1.08997 * 109.46763 * 60.00015 * 7 6 5 35 35 H 1.08994 * 109.46860 * 299.99949 * 7 6 5 36 36 H 1.07997 * 119.91004 * 0.03109 * 10 9 8 37 37 H 1.08001 * 120.09133 * 179.74824 * 11 10 9 38 38 H 0.97001 * 120.00621 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.09699 * 180.02562 * 21 12 11 40 40 H 1.08004 * 119.90886 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.8003 2.6579 1.1813 6 6 4.7723 2.6856 2.3626 7 6 5.5373 4.0107 2.3626 8 8 6.4446 4.0369 3.4663 9 6 7.2058 5.1505 3.6116 10 6 7.0748 6.2020 2.7071 11 6 7.8402 7.3233 2.8432 12 6 8.7566 7.4204 3.9082 13 6 9.5482 8.5800 4.0599 14 1 9.2121 9.5208 3.6496 15 6 10.7677 8.5100 4.7418 16 7 11.3464 7.3514 4.9307 17 14 11.5702 10.0703 5.3828 18 1 10.7211 11.2399 5.0415 19 1 11.7199 9.9802 6.8574 20 1 12.9079 10.2314 4.7584 21 6 8.8791 6.3551 4.8210 22 6 8.1100 5.2386 4.6677 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3585 2.1316 0.0897 27 1 2.6212 1.4027 -0.9313 28 1 3.7399 0.5066 1.0920 29 1 2.4772 1.2355 2.1130 30 1 3.0956 3.4847 1.2707 31 1 4.3582 2.7550 0.2499 32 1 5.4770 1.8590 2.2728 33 1 4.2148 2.5884 3.2942 34 1 4.8323 4.8372 2.4526 35 1 6.0947 4.1084 1.4311 36 1 6.3680 6.1279 1.8939 37 1 7.7404 8.1358 2.1388 38 1 12.1921 7.3029 5.4031 39 1 9.5792 6.4220 5.6406 40 1 8.2024 4.4209 5.3671 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232586105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = -43.912868 kcal Electronic energy + Delta-G solvation = -17866.114536 eV Core-core repulsion = 15030.700092 eV Total energy + Delta-G solvation = -2835.414443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53598 -38.38608 -37.38768 -35.35066 -34.70677 -31.87961 -31.15289 -30.63744 -27.27215 -26.32100 -23.81012 -22.64612 -22.10664 -21.83371 -20.53713 -19.23248 -18.59658 -17.23733 -17.03926 -16.38581 -16.29168 -15.74175 -15.56037 -14.85985 -14.68528 -14.43487 -14.07533 -13.97596 -13.74477 -13.59983 -13.14246 -12.84664 -12.75183 -12.70298 -12.40134 -12.26160 -12.07440 -11.93081 -11.67623 -11.57128 -11.46023 -11.34158 -11.17864 -10.87156 -10.16853 -9.56930 -8.93033 -8.59852 -6.23171 0.94022 1.01842 1.40049 1.43397 1.51058 1.55510 2.23076 2.61135 2.72482 3.69423 3.85540 3.95039 4.08986 4.20096 4.21567 4.28737 4.35591 4.40719 4.45685 4.66399 4.68305 4.78207 4.88098 4.92642 4.99295 5.03434 5.07439 5.12556 5.21283 5.24949 5.30002 5.39805 5.47124 5.59347 5.64896 5.79239 5.88933 5.92886 6.05325 6.26057 6.56730 6.81024 6.94635 7.10109 8.36984 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.079474 B = 0.002558 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.231298 B =10942.944087 C =11167.943373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.095 4.095 4 C -0.109 4.109 5 C -0.111 4.111 6 C -0.110 4.110 7 C 0.058 3.942 8 O -0.341 6.341 9 C -0.001 4.001 10 C -0.166 4.166 11 C -0.208 4.208 12 C 0.053 3.947 13 C -0.498 4.498 14 H 0.076 0.924 15 C 0.032 3.968 16 N -0.831 5.831 17 Si 0.983 3.017 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.267 1.267 21 C -0.153 4.153 22 C -0.135 4.135 23 H 0.098 0.902 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.288 0.712 39 H 0.111 0.889 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -9.656 -6.924 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.180 4.180 3 C -0.132 4.132 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.018 4.018 8 O -0.257 6.257 9 C -0.045 4.045 10 C -0.185 4.185 11 C -0.228 4.228 12 C 0.051 3.949 13 C -0.528 4.528 14 H 0.094 0.906 15 C -0.182 4.182 16 N -0.458 5.458 17 Si 0.804 3.196 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.191 1.191 21 C -0.172 4.172 22 C -0.154 4.154 23 H 0.116 0.884 24 H 0.122 0.878 25 H 0.130 0.870 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.955 -9.935 -6.726 18.403 hybrid contribution 0.596 0.680 0.177 0.921 sum -13.359 -9.255 -6.549 17.522 Atomic orbital electron populations 1.24015 0.96063 1.02398 1.01373 1.23107 0.96326 0.98859 0.99751 1.20782 0.98176 0.95412 0.98854 1.21466 0.97745 0.97006 0.98459 1.21477 0.97467 0.98618 0.97251 1.21510 0.97964 0.95023 1.00230 1.22838 0.91051 0.99693 0.88176 1.85805 1.52423 1.37735 1.49763 1.18705 0.98215 0.88004 0.99558 1.20718 1.02753 0.94668 1.00356 1.20817 1.03182 0.98932 0.99866 1.17973 0.92411 0.93775 0.90720 1.19733 1.03668 0.96002 1.33397 0.90566 1.26765 0.97066 1.00859 0.93484 1.69893 1.15842 1.28029 1.32078 0.85142 0.78048 0.77767 0.78616 1.18159 1.18948 1.19145 1.20910 1.00971 0.94717 1.00633 1.20034 0.98006 0.98975 0.98339 0.88378 0.87783 0.87005 0.91367 0.90581 0.91546 0.91963 0.91230 0.91144 0.91293 0.91267 0.92639 0.92850 0.85544 0.87601 0.90184 0.87109 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.57 14.32 67.78 0.97 -1.60 16 2 C -0.16 -2.20 9.52 25.65 0.24 -1.96 16 3 C -0.10 -1.30 5.66 29.85 0.17 -1.13 16 4 C -0.11 -1.65 5.20 30.59 0.16 -1.49 16 5 C -0.11 -1.92 5.21 30.59 0.16 -1.76 16 6 C -0.11 -2.54 5.58 30.60 0.17 -2.37 16 7 C 0.06 1.76 4.73 71.98 0.34 2.10 16 8 O -0.34 -13.94 10.12 -89.88 -0.91 -14.85 16 9 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 10 C -0.17 -7.55 8.96 22.11 0.20 -7.35 16 11 C -0.21 -10.46 9.74 22.49 0.22 -10.24 16 12 C 0.05 2.96 5.57 -21.28 -0.12 2.85 16 13 C -0.50 -27.35 9.04 23.40 0.21 -27.14 16 14 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 15 C 0.03 1.64 5.13 85.24 0.44 2.08 16 16 N -0.83 -44.38 10.96 21.82 0.24 -44.14 16 17 Si 0.98 38.74 29.60 68.60 2.03 40.77 16 18 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 21 C -0.15 -8.36 8.64 22.48 0.19 -8.17 16 22 C -0.13 -6.76 9.92 22.11 0.22 -6.54 16 23 H 0.10 1.17 7.84 -2.91 -0.02 1.15 16 24 H 0.10 1.10 8.06 -2.91 -0.02 1.08 16 25 H 0.11 1.38 8.06 -2.91 -0.02 1.35 16 26 H 0.07 0.91 7.79 -2.39 -0.02 0.89 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.62 7.64 -2.39 -0.02 1.60 16 35 H 0.05 1.58 7.66 -2.39 -0.02 1.57 16 36 H 0.13 4.80 6.27 -2.91 -0.02 4.79 16 37 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 38 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 39 H 0.11 6.26 6.16 -2.91 -0.02 6.24 16 40 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -60.82 334.73 6.07 -54.75 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.98 Total: 26.09 kcal Atomic # 6 Polarization: -66.34 SS G_CDS: 3.73 Total: -62.61 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.24 Total: -44.14 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.91 Total: -14.85 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -60.82 6.07 -54.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232586105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.835 kcal (2) G-P(sol) polarization free energy of solvation -60.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds