Wall clock time and date at job start Mon Mar 30 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 112.84868 * 2 1 4 4 N 1.46497 * 109.47424 * 48.79974 * 3 2 1 5 5 C 1.39854 * 120.00025 * 180.02562 * 4 3 2 6 6 C 1.39605 * 119.83899 * 359.97438 * 5 4 3 7 7 C 1.38048 * 120.54951 * 179.97438 * 6 5 4 8 8 C 1.38739 * 120.22231 * 359.78265 * 7 6 5 9 9 N 1.38861 * 120.16657 * 180.25759 * 8 7 6 10 10 C 1.41565 * 119.67195 * 0.48907 * 8 7 6 11 11 C 1.41029 * 120.27136 * 179.76830 * 10 8 7 12 12 H 1.08003 * 119.99334 * 333.08390 * 11 10 8 13 13 C 1.39881 * 120.00016 * 153.36171 * 11 10 8 14 14 N 1.30893 * 120.00259 * 343.99192 * 13 11 10 15 15 Si 1.86805 * 119.99851 * 163.99469 * 13 11 10 16 16 H 1.48506 * 109.46825 * 89.99592 * 15 13 11 17 17 H 1.48497 * 109.47152 * 210.00039 * 15 13 11 18 18 H 1.48498 * 109.47044 * 330.00196 * 15 13 11 19 19 C 1.38000 * 119.84204 * 179.97438 * 5 4 3 20 20 C 1.53787 * 113.68913 * 131.26194 * 2 1 3 21 21 C 1.53777 * 87.07913 * 89.12756 * 20 2 1 22 22 C 1.53773 * 113.61419 * 228.79735 * 2 1 3 23 23 H 1.09001 * 109.46397 * 69.67066 * 1 2 3 24 24 H 1.08993 * 109.46882 * 189.67104 * 1 2 3 25 25 H 1.09002 * 109.46928 * 309.67375 * 1 2 3 26 26 H 1.08999 * 109.46735 * 288.79463 * 3 2 1 27 27 H 1.09001 * 109.46879 * 168.80508 * 3 2 1 28 28 H 0.96999 * 119.99963 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.72198 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.89021 * 180.02562 * 7 6 5 31 31 H 0.97004 * 120.00166 * 180.23618 * 9 8 7 32 32 H 0.96995 * 120.00174 * 0.23783 * 9 8 7 33 33 H 0.96998 * 120.00256 * 179.97438 * 14 13 11 34 34 H 1.08005 * 120.11491 * 0.02562 * 19 5 4 35 35 H 1.08995 * 113.61464 * 203.67791 * 20 2 1 36 36 H 1.09003 * 113.61355 * 334.58179 * 20 2 1 37 37 H 1.08999 * 113.61571 * 270.88522 * 21 20 2 38 38 H 1.09004 * 113.68919 * 139.99062 * 21 20 2 39 39 H 1.08994 * 113.61619 * 25.35445 * 22 2 1 40 40 H 1.09004 * 113.61419 * 156.25579 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 7 1.4754 2.2133 1.0392 5 6 1.8539 3.5459 1.2311 6 6 2.8507 4.1071 0.4307 7 6 3.2353 5.4211 0.6071 8 6 2.6299 6.2011 1.5818 9 7 3.0139 7.5243 1.7546 10 6 1.6222 5.6400 2.4025 11 6 1.0019 6.4200 3.4004 12 1 1.5324 7.2487 3.8455 13 6 -0.2983 6.1166 3.8177 14 7 -1.0530 5.3325 3.0905 15 14 -0.9577 6.8307 5.4130 16 1 -1.6161 8.1330 5.1375 17 1 -1.9448 5.8923 6.0047 18 1 0.1637 7.0347 6.3648 19 6 1.2403 4.2998 2.2106 20 6 2.1479 -0.9288 1.0586 21 6 2.0950 -2.0420 -0.0010 22 6 2.1460 -0.9281 -1.0601 23 1 -0.3632 0.3570 -0.9637 24 1 -0.3633 -1.0130 0.1726 25 1 -0.3633 0.6561 0.7910 26 1 1.9601 1.8733 -0.9729 27 1 3.1943 1.3533 0.1995 28 1 0.7834 1.8209 1.5942 29 1 3.3242 3.5083 -0.3333 30 1 4.0072 5.8445 -0.0183 31 1 2.5915 8.0666 2.4391 32 1 3.7046 7.9065 1.1909 33 1 -1.9544 5.1218 3.3801 34 1 0.4698 3.8622 2.8282 35 1 3.1609 -0.6486 1.3474 36 1 1.4973 -1.1092 1.9143 37 1 1.1595 -2.6013 -0.0004 38 1 2.9738 -2.6869 -0.0029 39 1 1.4941 -1.1080 -1.9148 40 1 3.1586 -0.6479 -1.3505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232795997.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:28 Heat of formation + Delta-G solvation = 34.217763 kcal Electronic energy + Delta-G solvation = -19266.667791 eV Core-core repulsion = 16466.934097 eV Total energy + Delta-G solvation = -2799.733694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.59867 -37.74076 -34.95643 -33.41222 -31.83425 -29.37513 -29.26229 -27.20427 -25.70185 -25.10457 -24.58925 -22.07851 -20.92901 -19.57818 -18.12867 -17.03006 -16.32376 -15.45145 -15.30432 -15.10523 -14.70583 -14.38797 -13.90976 -13.74657 -13.11756 -12.69697 -12.37361 -12.21200 -12.11273 -11.97083 -11.72866 -11.56911 -11.26041 -11.12349 -11.02806 -10.94766 -10.46485 -10.33287 -10.14004 -10.09076 -9.73399 -9.59890 -9.27107 -9.01522 -7.69279 -7.17183 -6.57705 -5.47403 -4.03023 2.93863 3.14926 3.19295 3.34224 3.52894 4.06183 4.37558 4.65083 4.70308 4.84858 4.85701 4.93384 5.32209 5.46548 5.55594 5.62727 5.76346 5.87307 5.87738 5.90812 5.93542 6.02829 6.14711 6.22003 6.30810 6.41284 6.45859 6.60021 6.68308 7.16768 7.20364 7.35905 7.54194 7.75586 7.92973 8.04894 8.17328 8.50363 8.81117 8.95606 8.99644 9.04701 9.30006 9.38686 10.41475 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.005230 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.274597 B = 5352.739137 C = 6343.773247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.094 4.094 3 C 0.156 3.844 4 N -0.760 5.760 5 C 0.178 3.822 6 C -0.255 4.255 7 C -0.153 4.153 8 C 0.084 3.916 9 N -0.889 5.889 10 C 0.096 3.904 11 C -0.465 4.465 12 H 0.070 0.930 13 C 0.077 3.923 14 N -0.801 5.801 15 Si 0.900 3.100 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.201 4.201 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.129 4.129 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.387 0.613 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.388 0.612 32 H 0.374 0.626 33 H 0.274 0.726 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 -9.543 -4.083 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 C 0.030 3.970 4 N -0.396 5.396 5 C 0.079 3.921 6 C -0.279 4.279 7 C -0.177 4.177 8 C -0.017 4.017 9 N -0.432 5.432 10 C 0.090 3.910 11 C -0.497 4.497 12 H 0.088 0.912 13 C -0.138 4.138 14 N -0.428 5.428 15 Si 0.725 3.275 16 H -0.199 1.199 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.225 4.225 20 C -0.167 4.167 21 C -0.179 4.179 22 C -0.167 4.167 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.221 0.779 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.216 0.784 32 H 0.198 0.802 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.684 -9.768 -4.235 10.979 hybrid contribution -0.556 0.551 0.849 1.155 sum 2.128 -9.216 -3.386 10.046 Atomic orbital electron populations 1.21543 0.93012 1.01293 1.02503 1.22054 0.95976 0.94272 0.97165 1.20921 0.95600 0.88603 0.91831 1.44374 1.45057 1.09952 1.40193 1.17529 0.95134 0.83340 0.96102 1.19609 1.05838 0.96046 1.06388 1.19702 1.02732 0.94422 1.00869 1.17865 1.00680 0.84938 0.98207 1.41800 1.46741 1.11104 1.43532 1.16962 0.90766 0.91419 0.91815 1.19111 0.98273 1.13597 1.18680 0.91177 1.25727 0.96766 0.94288 0.97062 1.69878 1.07897 1.30197 1.34869 0.86465 0.79041 0.79227 0.82766 1.19880 1.20414 1.18809 1.20476 1.05956 0.93667 1.02411 1.22996 1.01275 0.95813 0.96610 1.22808 1.01571 0.96364 0.97166 1.22943 1.01105 0.96081 0.96559 0.92342 0.92852 0.91701 0.93784 0.93690 0.77874 0.89810 0.89863 0.78369 0.80156 0.91526 0.86594 0.90036 0.91630 0.90477 0.91826 0.91574 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.90 37.16 0.33 -1.26 16 2 C -0.09 -1.21 1.09 -153.69 -0.17 -1.38 16 3 C 0.16 2.52 4.38 -4.04 -0.02 2.51 16 4 N -0.76 -14.86 5.46 -58.64 -0.32 -15.18 16 5 C 0.18 4.22 6.64 -83.77 -0.56 3.67 16 6 C -0.25 -5.94 9.31 -39.14 -0.36 -6.30 16 7 C -0.15 -3.59 9.86 -39.47 -0.39 -3.98 16 8 C 0.08 2.08 6.79 -83.22 -0.56 1.51 16 9 N -0.89 -18.58 8.98 32.75 0.29 -18.29 16 10 C 0.10 2.58 5.57 -106.66 -0.59 1.98 16 11 C -0.47 -12.40 8.47 -37.91 -0.32 -12.72 16 12 H 0.07 1.78 6.73 -52.48 -0.35 1.42 16 13 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 14 N -0.80 -21.22 10.97 55.54 0.61 -20.61 16 15 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 19 C -0.20 -5.30 8.49 -38.75 -0.33 -5.63 16 20 C -0.13 -1.54 7.21 -25.92 -0.19 -1.73 16 21 C -0.14 -1.42 7.73 -25.92 -0.20 -1.62 16 22 C -0.13 -1.39 7.23 -25.92 -0.19 -1.58 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.58 7.34 -51.93 -0.38 0.20 16 25 H 0.06 0.91 6.28 -51.93 -0.33 0.58 16 26 H 0.04 0.75 7.94 -51.93 -0.41 0.34 16 27 H 0.05 0.74 7.74 -51.93 -0.40 0.34 16 28 H 0.39 7.31 6.75 -40.82 -0.28 7.04 16 29 H 0.08 1.78 6.69 -52.48 -0.35 1.43 16 30 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.39 7.95 7.07 -40.82 -0.29 7.66 16 32 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 33 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 34 H 0.12 3.18 6.23 -52.48 -0.33 2.85 16 35 H 0.08 1.01 7.96 -51.93 -0.41 0.59 16 36 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.08 0.72 7.64 -51.93 -0.40 0.32 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -28.33 317.29 -9.25 -37.58 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -5.95 Total: 22.25 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -3.64 Total: -24.63 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.58 Total: -54.08 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.33 -9.25 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232795997.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.800 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds