Wall clock time and date at job start Mon Mar 30 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 112.84868 * 2 1 4 4 N 1.46497 * 109.47424 * 48.79974 * 3 2 1 5 5 C 1.39854 * 120.00025 * 180.02562 * 4 3 2 6 6 C 1.39605 * 119.83899 * 359.97438 * 5 4 3 7 7 C 1.38048 * 120.54951 * 179.97438 * 6 5 4 8 8 C 1.38739 * 120.22231 * 359.78265 * 7 6 5 9 9 N 1.38861 * 120.16657 * 180.25759 * 8 7 6 10 10 C 1.41565 * 119.67195 * 0.48907 * 8 7 6 11 11 C 1.41029 * 120.27136 * 179.76830 * 10 8 7 12 12 H 1.08003 * 119.99334 * 333.08390 * 11 10 8 13 13 C 1.39881 * 120.00016 * 153.36171 * 11 10 8 14 14 N 1.30893 * 120.00259 * 343.99192 * 13 11 10 15 15 Si 1.86805 * 119.99851 * 163.99469 * 13 11 10 16 16 H 1.48506 * 109.46825 * 89.99592 * 15 13 11 17 17 H 1.48497 * 109.47152 * 210.00039 * 15 13 11 18 18 H 1.48498 * 109.47044 * 330.00196 * 15 13 11 19 19 C 1.38000 * 119.84204 * 179.97438 * 5 4 3 20 20 C 1.53787 * 113.68913 * 131.26194 * 2 1 3 21 21 C 1.53777 * 87.07913 * 89.12756 * 20 2 1 22 22 C 1.53773 * 113.61419 * 228.79735 * 2 1 3 23 23 H 1.09001 * 109.46397 * 69.67066 * 1 2 3 24 24 H 1.08993 * 109.46882 * 189.67104 * 1 2 3 25 25 H 1.09002 * 109.46928 * 309.67375 * 1 2 3 26 26 H 1.08999 * 109.46735 * 288.79463 * 3 2 1 27 27 H 1.09001 * 109.46879 * 168.80508 * 3 2 1 28 28 H 0.96999 * 119.99963 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.72198 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.89021 * 180.02562 * 7 6 5 31 31 H 0.97004 * 120.00166 * 180.23618 * 9 8 7 32 32 H 0.96995 * 120.00174 * 0.23783 * 9 8 7 33 33 H 0.96998 * 120.00256 * 179.97438 * 14 13 11 34 34 H 1.08005 * 120.11491 * 0.02562 * 19 5 4 35 35 H 1.08995 * 113.61464 * 203.67791 * 20 2 1 36 36 H 1.09003 * 113.61355 * 334.58179 * 20 2 1 37 37 H 1.08999 * 113.61571 * 270.88522 * 21 20 2 38 38 H 1.09004 * 113.68919 * 139.99062 * 21 20 2 39 39 H 1.08994 * 113.61619 * 25.35445 * 22 2 1 40 40 H 1.09004 * 113.61419 * 156.25579 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 7 1.4754 2.2133 1.0392 5 6 1.8539 3.5459 1.2311 6 6 2.8507 4.1071 0.4307 7 6 3.2353 5.4211 0.6071 8 6 2.6299 6.2011 1.5818 9 7 3.0139 7.5243 1.7546 10 6 1.6222 5.6400 2.4025 11 6 1.0019 6.4200 3.4004 12 1 1.5324 7.2487 3.8455 13 6 -0.2983 6.1166 3.8177 14 7 -1.0530 5.3325 3.0905 15 14 -0.9577 6.8307 5.4130 16 1 -1.6161 8.1330 5.1375 17 1 -1.9448 5.8923 6.0047 18 1 0.1637 7.0347 6.3648 19 6 1.2403 4.2998 2.2106 20 6 2.1479 -0.9288 1.0586 21 6 2.0950 -2.0420 -0.0010 22 6 2.1460 -0.9281 -1.0601 23 1 -0.3632 0.3570 -0.9637 24 1 -0.3633 -1.0130 0.1726 25 1 -0.3633 0.6561 0.7910 26 1 1.9601 1.8733 -0.9729 27 1 3.1943 1.3533 0.1995 28 1 0.7834 1.8209 1.5942 29 1 3.3242 3.5083 -0.3333 30 1 4.0072 5.8445 -0.0183 31 1 2.5915 8.0666 2.4391 32 1 3.7046 7.9065 1.1909 33 1 -1.9544 5.1218 3.3801 34 1 0.4698 3.8622 2.8282 35 1 3.1609 -0.6486 1.3474 36 1 1.4973 -1.1092 1.9143 37 1 1.1595 -2.6013 -0.0004 38 1 2.9738 -2.6869 -0.0029 39 1 1.4941 -1.1080 -1.9148 40 1 3.1586 -0.6479 -1.3505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232795997.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:28 Heat of formation + Delta-G solvation = 18.174805 kcal Electronic energy + Delta-G solvation = -19267.363466 eV Core-core repulsion = 16466.934097 eV Total energy + Delta-G solvation = -2800.429369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66028 -39.51822 -36.59006 -35.31590 -33.44085 -31.29922 -30.49332 -28.68153 -26.84817 -26.65967 -26.17352 -23.39530 -22.58905 -21.37325 -19.15106 -18.89503 -17.92299 -17.24497 -16.81694 -16.52888 -16.20736 -15.77759 -15.26370 -15.03029 -14.43420 -14.24910 -14.13883 -13.76624 -13.59702 -13.24367 -13.11450 -12.97052 -12.85248 -12.68568 -12.62195 -12.10727 -12.05338 -11.83323 -11.44628 -11.33685 -11.18510 -10.97963 -10.91841 -10.87375 -9.38124 -9.12375 -8.49044 -7.27593 -6.00027 1.13018 1.41139 1.50031 1.54798 1.66311 2.27746 2.91597 2.99553 3.66857 3.71716 3.78006 3.85209 3.97631 4.00004 4.23798 4.57229 4.62119 4.72836 4.76132 4.84756 4.88173 4.93271 4.96752 5.03022 5.09508 5.19928 5.23941 5.24923 5.36095 5.43480 5.50120 5.63356 5.69076 5.90370 6.07268 6.17818 6.30058 6.57968 6.98501 7.07579 7.15026 7.29241 7.48791 7.67836 8.52145 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.005230 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.274597 B = 5352.739137 C = 6343.773247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 C 0.156 3.844 4 N -0.755 5.755 5 C 0.173 3.827 6 C -0.260 4.260 7 C -0.158 4.158 8 C 0.068 3.932 9 N -0.879 5.879 10 C 0.062 3.938 11 C -0.494 4.494 12 H 0.074 0.926 13 C 0.034 3.966 14 N -0.835 5.835 15 Si 0.974 3.026 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.261 1.261 19 C -0.226 4.226 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.123 4.123 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.388 0.612 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.390 0.610 32 H 0.390 0.610 33 H 0.279 0.721 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 -10.395 -4.526 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.098 4.098 3 C 0.031 3.969 4 N -0.390 5.390 5 C 0.072 3.928 6 C -0.284 4.284 7 C -0.182 4.182 8 C -0.034 4.034 9 N -0.423 5.423 10 C 0.056 3.944 11 C -0.525 4.525 12 H 0.092 0.908 13 C -0.179 4.179 14 N -0.462 5.462 15 Si 0.796 3.204 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.185 1.185 19 C -0.251 4.251 20 C -0.171 4.171 21 C -0.166 4.166 22 C -0.161 4.161 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.222 0.778 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.218 0.782 32 H 0.218 0.782 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.162 -10.628 -4.703 12.044 hybrid contribution -0.645 0.779 0.905 1.356 sum 2.517 -9.849 -3.798 10.852 Atomic orbital electron populations 1.21519 0.92905 1.02048 1.01639 1.22093 0.96058 0.92444 0.99201 1.21080 0.95520 0.90089 0.90212 1.44469 1.44927 1.08843 1.40729 1.17658 0.94857 0.84877 0.95366 1.19910 1.05511 0.96432 1.06506 1.20047 1.02991 0.94485 1.00686 1.18039 1.00548 0.86476 0.98302 1.41668 1.46985 1.09868 1.43763 1.17359 0.92079 0.92019 0.92897 1.19382 0.99140 1.14322 1.19670 0.90810 1.26558 0.96685 0.94541 1.00073 1.69964 1.08360 1.31406 1.36492 0.85337 0.78285 0.78585 0.78200 1.19043 1.19850 1.18533 1.20443 1.06589 0.94322 1.03715 1.23013 1.00679 0.96599 0.96843 1.22767 1.02809 0.95812 0.95199 1.22942 1.01287 0.95293 0.96537 0.92467 0.90779 0.93774 0.94459 0.93783 0.77765 0.87759 0.87163 0.78212 0.78219 0.91098 0.88637 0.90706 0.91961 0.89371 0.90453 0.90524 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.90 71.98 0.64 -2.36 16 2 C -0.10 -2.37 1.09 -51.65 -0.06 -2.43 16 3 C 0.16 4.93 4.38 86.38 0.38 5.31 16 4 N -0.75 -29.92 5.46 -339.43 -1.85 -31.77 16 5 C 0.17 8.37 6.64 38.13 0.25 8.62 16 6 C -0.26 -11.96 9.31 22.55 0.21 -11.75 16 7 C -0.16 -7.27 9.86 22.34 0.22 -7.05 16 8 C 0.07 3.39 6.79 38.97 0.26 3.65 16 9 N -0.88 -36.22 8.98 -50.31 -0.45 -36.67 16 10 C 0.06 3.41 5.57 -21.18 -0.12 3.29 16 11 C -0.49 -26.91 8.47 23.35 0.20 -26.71 16 12 H 0.07 3.80 6.73 -2.91 -0.02 3.78 16 13 C 0.03 1.77 5.16 85.23 0.44 2.21 16 14 N -0.83 -45.46 10.97 21.82 0.24 -45.22 16 15 Si 0.97 39.70 29.59 68.60 2.03 41.73 16 16 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 17 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 18 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 19 C -0.23 -12.36 8.49 22.81 0.19 -12.16 16 20 C -0.13 -2.98 7.21 31.12 0.22 -2.76 16 21 C -0.13 -2.20 7.73 31.12 0.24 -1.96 16 22 C -0.12 -2.33 7.23 31.12 0.23 -2.11 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.47 7.34 -2.39 -0.02 1.45 16 25 H 0.04 1.24 6.28 -2.39 -0.01 1.22 16 26 H 0.04 1.24 7.94 -2.39 -0.02 1.22 16 27 H 0.04 1.41 7.74 -2.39 -0.02 1.39 16 28 H 0.39 15.10 6.75 -92.71 -0.63 14.48 16 29 H 0.10 4.29 6.69 -2.91 -0.02 4.27 16 30 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 31 H 0.39 15.88 7.07 -92.71 -0.65 15.22 16 32 H 0.39 13.27 8.83 -92.71 -0.82 12.45 16 33 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 34 H 0.10 5.51 6.23 -2.91 -0.02 5.49 16 35 H 0.07 1.76 7.96 -2.39 -0.02 1.74 16 36 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.09 1.34 7.64 -2.39 -0.02 1.33 16 38 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.08 1.57 8.10 -2.38 -0.02 1.55 16 Total: -1.00 -61.59 317.29 2.25 -59.35 By element: Atomic # 1 Polarization: 59.81 SS G_CDS: -1.03 Total: 58.78 kcal Atomic # 6 Polarization: -49.51 SS G_CDS: 3.31 Total: -46.20 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -2.07 Total: -113.66 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -61.59 2.25 -59.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232795997.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.522 kcal (2) G-P(sol) polarization free energy of solvation -61.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds