Wall clock time and date at job start Mon Mar 30 2020 07:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.46974 * 2 1 4 4 C 1.52990 * 115.55321 * 294.93767 * 3 2 1 5 5 N 1.46503 * 109.46929 * 294.24570 * 4 3 2 6 6 C 1.39855 * 119.99877 * 183.45663 * 5 4 3 7 7 C 1.39596 * 119.84057 * 359.97438 * 6 5 4 8 8 C 1.38059 * 120.55230 * 180.02562 * 7 6 5 9 9 C 1.38739 * 120.22101 * 0.02562 * 8 7 6 10 10 N 1.38858 * 120.16463 * 179.97438 * 9 8 7 11 11 C 1.41566 * 119.66963 * 0.02562 * 9 8 7 12 12 C 1.41030 * 120.26367 * 179.97438 * 11 9 8 13 13 H 1.07994 * 120.00039 * 27.60523 * 12 11 9 14 14 C 1.39890 * 119.99577 * 207.60674 * 12 11 9 15 15 N 1.30900 * 119.99901 * 14.34922 * 14 12 11 16 16 Si 1.86803 * 119.99703 * 194.34624 * 14 12 11 17 17 H 1.48498 * 109.46678 * 60.00284 * 16 14 12 18 18 H 1.48504 * 109.46761 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47128 * 299.99988 * 16 14 12 20 20 C 1.38007 * 119.84121 * 180.02562 * 6 5 4 21 21 C 1.53003 * 117.49642 * 80.60917 * 3 2 1 22 22 C 1.53006 * 117.49747 * 149.26511 * 3 2 1 23 23 H 1.09002 * 109.47432 * 65.70585 * 1 2 3 24 24 H 1.09001 * 109.47253 * 185.70691 * 1 2 3 25 25 H 1.08999 * 109.47257 * 305.70179 * 1 2 3 26 26 H 1.08996 * 109.47232 * 240.00335 * 2 1 3 27 27 H 1.09002 * 109.47322 * 120.00330 * 2 1 3 28 28 H 1.09006 * 109.47204 * 174.25037 * 4 3 2 29 29 H 1.08998 * 109.47264 * 54.24874 * 4 3 2 30 30 H 0.96991 * 120.00323 * 3.45862 * 5 4 3 31 31 H 1.08001 * 119.72535 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.89214 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99701 * 180.02562 * 10 9 8 34 34 H 0.97003 * 119.99800 * 0.03078 * 10 9 8 35 35 H 0.96997 * 119.99509 * 179.97438 * 15 14 12 36 36 H 1.08006 * 120.11344 * 0.25448 * 20 6 5 37 37 H 1.08997 * 117.50066 * 215.00035 * 21 3 2 38 38 H 1.09006 * 117.49996 * 0.02562 * 21 3 2 39 39 H 1.09002 * 117.49717 * 359.97438 * 22 3 2 40 40 H 1.08998 * 117.49910 * 144.97395 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7112 2.2587 -1.2516 5 7 2.4151 1.6904 -2.4039 6 6 2.3273 2.3126 -3.6534 7 6 1.5675 3.4746 -3.7988 8 6 1.4702 4.1005 -5.0255 9 6 2.1285 3.5789 -6.1298 10 7 2.0294 4.2091 -7.3632 11 6 2.9007 2.4003 -5.9932 12 6 3.5745 1.8588 -7.1075 13 1 3.8888 2.5041 -7.9144 14 6 3.8357 0.4858 -7.1675 15 7 3.2241 -0.3331 -6.3497 16 14 5.0572 -0.1788 -8.4149 17 1 6.3902 0.4299 -8.1749 18 1 5.1537 -1.6541 -8.2755 19 1 4.5980 0.1594 -9.7860 20 6 2.9913 1.7742 -4.7368 21 6 2.0665 2.1823 1.3390 22 6 3.3752 1.7197 0.6936 23 1 -0.3634 0.4228 -0.9367 24 1 -0.3634 -1.0226 0.1022 25 1 -0.3634 0.5997 0.8345 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0279 3.2914 -1.1055 29 1 0.6366 2.2302 -1.4320 30 1 2.9420 0.8827 -2.3003 31 1 1.0514 3.8874 -2.9446 32 1 0.8791 4.9988 -5.1261 33 1 2.4903 3.8420 -8.1337 34 1 1.4994 5.0164 -7.4541 35 1 3.4050 -1.2851 -6.3917 36 1 3.5742 0.8723 -4.6216 37 1 1.8499 3.2505 1.3282 38 1 1.7212 1.6412 2.2200 39 1 3.8901 0.8745 1.1503 40 1 4.0197 2.4832 0.2580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232956753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:32 Heat of formation + Delta-G solvation = 34.267131 kcal Electronic energy + Delta-G solvation = -19212.481319 eV Core-core repulsion = 16412.749766 eV Total energy + Delta-G solvation = -2799.731553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.77403 -37.61316 -34.70251 -33.40002 -31.82656 -31.42003 -29.37168 -27.45365 -24.94819 -24.40899 -23.76339 -22.20118 -21.12509 -19.63546 -18.62137 -17.00709 -16.19611 -15.47098 -15.35375 -15.11784 -14.73581 -14.42114 -13.93136 -13.58764 -13.05281 -12.80862 -12.44156 -12.29788 -12.04838 -11.86319 -11.69515 -11.45446 -11.29485 -11.15738 -11.01197 -10.97559 -10.56574 -10.35174 -10.16662 -9.85662 -9.74808 -9.53837 -9.26135 -9.02433 -7.70261 -7.16379 -6.56275 -5.47939 -4.03889 2.95510 3.14547 3.17592 3.34194 3.52188 3.74631 4.06505 4.56769 4.73685 4.86182 4.88821 5.04110 5.13039 5.45982 5.46728 5.61067 5.66963 5.69219 5.90178 5.92667 5.98050 6.05963 6.15399 6.18917 6.30501 6.38562 6.40531 6.46620 6.66967 7.16353 7.19254 7.35889 7.53786 7.75022 7.92115 8.04203 8.17348 8.50006 8.80298 8.95630 8.99378 9.04316 9.29523 9.38043 10.42771 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.005379 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.768829 B = 5204.348611 C = 6046.258887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.132 4.132 4 C 0.178 3.822 5 N -0.758 5.758 6 C 0.178 3.822 7 C -0.255 4.255 8 C -0.153 4.153 9 C 0.085 3.915 10 N -0.889 5.889 11 C 0.095 3.905 12 C -0.466 4.466 13 H 0.070 0.930 14 C 0.076 3.924 15 N -0.803 5.803 16 Si 0.902 3.098 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.269 1.269 20 C -0.198 4.198 21 C -0.170 4.170 22 C -0.171 4.171 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.388 0.612 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.388 0.612 34 H 0.374 0.626 35 H 0.274 0.726 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 0.983 10.074 10.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.132 4.132 4 C 0.053 3.947 5 N -0.393 5.393 6 C 0.079 3.921 7 C -0.279 4.279 8 C -0.178 4.178 9 C -0.016 4.016 10 N -0.432 5.432 11 C 0.090 3.910 12 C -0.497 4.497 13 H 0.088 0.912 14 C -0.139 4.139 15 N -0.430 5.430 16 Si 0.727 3.273 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.222 4.222 21 C -0.208 4.208 22 C -0.208 4.208 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.221 0.779 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.216 0.784 34 H 0.199 0.801 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.859 0.797 10.295 10.492 hybrid contribution 0.622 -0.513 -0.812 1.144 sum -1.236 0.285 9.483 9.568 Atomic orbital electron populations 1.21711 0.95535 1.01102 1.02185 1.21000 0.96038 0.93258 1.01816 1.21738 1.01155 0.96733 0.93606 1.20435 0.96090 0.94753 0.83450 1.44247 1.58011 1.31120 1.05895 1.17516 0.97239 0.92760 0.84562 1.19608 1.11331 1.00335 0.96582 1.19702 1.04876 1.00604 0.92592 1.17875 1.01067 0.97128 0.85527 1.41804 1.60658 1.31435 1.09261 1.16962 0.91405 0.89895 0.92711 1.19085 1.33856 0.92348 1.04438 0.91225 1.25728 0.94937 0.97124 0.96107 1.69864 1.34664 1.04183 1.34301 0.86488 0.81728 0.77795 0.81255 1.19213 1.20654 1.19405 1.20489 1.07355 1.04066 0.90334 1.22969 1.01801 1.00423 0.95601 1.23014 0.90673 1.03390 1.03728 0.92119 0.93069 0.92984 0.91140 0.92427 0.93646 0.93341 0.77920 0.89829 0.89849 0.78354 0.80149 0.91483 0.86531 0.88874 0.88994 0.89101 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.63 37.15 0.36 -1.39 16 2 C -0.08 -1.03 5.73 -26.74 -0.15 -1.19 16 3 C -0.13 -1.71 1.55 -154.51 -0.24 -1.95 16 4 C 0.18 2.88 4.61 -4.05 -0.02 2.86 16 5 N -0.76 -14.76 5.65 -58.64 -0.33 -15.09 16 6 C 0.18 4.20 6.64 -83.78 -0.56 3.64 16 7 C -0.25 -5.90 9.29 -39.14 -0.36 -6.26 16 8 C -0.15 -3.59 9.86 -39.46 -0.39 -3.97 16 9 C 0.08 2.09 6.79 -83.23 -0.56 1.53 16 10 N -0.89 -18.52 8.98 32.75 0.29 -18.22 16 11 C 0.10 2.57 5.56 -106.66 -0.59 1.97 16 12 C -0.47 -12.38 8.45 -37.91 -0.32 -12.70 16 13 H 0.07 1.76 6.74 -52.49 -0.35 1.41 16 14 C 0.08 1.96 5.19 -17.33 -0.09 1.87 16 15 N -0.80 -21.24 10.96 55.55 0.61 -20.63 16 16 Si 0.90 19.17 29.58 -169.99 -5.03 14.14 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 C -0.20 -5.20 8.49 -38.75 -0.33 -5.53 16 21 C -0.17 -1.87 9.94 -26.69 -0.27 -2.14 16 22 C -0.17 -2.05 9.94 -26.69 -0.27 -2.32 16 23 H 0.06 0.82 7.24 -51.93 -0.38 0.44 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.97 7.57 -51.93 -0.39 0.58 16 27 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.05 0.76 7.71 -51.93 -0.40 0.36 16 29 H 0.05 0.82 7.03 -51.93 -0.36 0.45 16 30 H 0.39 7.35 7.92 -40.82 -0.32 7.03 16 31 H 0.08 1.77 6.69 -52.49 -0.35 1.42 16 32 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.39 7.94 7.08 -40.82 -0.29 7.65 16 34 H 0.37 6.59 8.83 -40.82 -0.36 6.23 16 35 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.12 3.19 6.25 -52.48 -0.33 2.86 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 324.54 15.07 4.89 4.89 Total: -1.00 -28.06 324.54 -9.41 -37.47 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -6.05 Total: 23.01 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -3.79 Total: -25.57 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.57 Total: -53.94 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.06 -9.41 -37.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232956753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.741 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds